RNA id: XM_036960847.1


Basic Information

Item Value
RNA id XM_036960847.1
length 7236
RNA type mRNA
GC content 0.46
exon number 18
gene id LOC110503086
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18434552 ~ 18502963 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCATCTGAGCAGGCAAGACCTCTCTTCCTCTGGTTCTCTTActcttttctgtctgtctttctctccttatTTAAAAAGGGGTGGGTCGTGAATTACATATTCGTCTGTGGCTGTAGTGGGTTAGGTTTTTGTTTGCTGTGCTTTCAGTCTCATTTGACATTTCGTTTAGTTCTCAAGTGTACTTTTTTTTTGACCATTTTTTTTTTCTGCTTTCAGAAGCTACTTGGCTCCTGCCCCACCCCCCTCTACCTCATTTTTTTTGAAGAAGATTCAACCAAACAAGCAATCAAAGCCTTTGGAAGAATGAGTACCTACAACATTTCTCTGAGTGGGTCGGCCCCATGGGGCTTCCGATTGCAGGGAGGCAAAGATTTCAACATGCCCCTGACCATCTCCAGGATCACCCCTGGGAGCAAGGCACAGCAGGGCAACCTGGTCCAGGGTGACATCATCGTGGCCATCGACGGCGTCAGCACTGAGGGCATGACCCACCTGGAGGCCCAGAACAAGATCAAGTGTGCCAGCTTTAACCTGGCCCTGACCATGCAGAAGTCAAAGCGCCCAGCTCTGCAAAGTGCCACCCCAAGAATCGACTCTCCCATGCAACAGATCCCTCACCAGAAGGTTATTTTCAACACTCCTGCCAACAACGAGTACATCCCCAACTTCAACCCCAATGCGCTGAAGGACACTGCCCTGTCCACCCACAAGCCCATCGAGGTGAAGGGTCCTGGGGGCAAGGCCACCATCATCCATGCCCAGTACAACACCCCCATTAGCATGTACTCCCAGGACGCCATCATGGACGCCATCGCCGGACAGTCCCAGTCCAAGGGCCACGAGGGCGGTTCACTCCCTGTAAAAGACGCTCAGGTAGACAGTGCCTCCCCAGTGTAtcaggctgtcatcaaggctgcAGACAGGGACATGGAGTTGAACGACTGGGCCCGCAGCTCCTCCCAGGTGCAGTCCAAGTCCTTCCGCCTCCTCGCCCACATCACGGGAACGGAGTTCATGCAAGACCCAGACGTGGAACATCTGAGGAAATCAAGGGAAAAGTTTGACACAGAATTTAAAGGCCCACGTTTTGCCAAATTGAAAAGTTGGCACAATGGCCTGTCTGCTCAAATCCTTAACGTGCCAGAAAAAACCCTGGTGGCTTCACCTGCTGCTTCACAGTCTCCAGAGCCCGCCCCCGTAGCCCCTGAACCCACCCCTGAGAGCGAGCAGCCACCCCCAGCCACCCAGACACAGCCAGTGGCCCCTGAGGCCCCTGCAGTCCCCTCTGGGGCACCTCGCCACCTGACGCATGCAGCCTCCCATATCTCGTCTGCTTTGATTACACAGTCTAGAAACAAGGTTTATAAGCAAGGGCCACCGCCCACCTCTGCGCTGGAGGCTCTGTCAATCACCCCAGTGTTCCGAAGCAGCACTTTGCCCAAACGAAAGCGCACCCTGCCCTCTGGGAAACCCAAGCacctgagCTACAGCCTGCAACAGTCTGCCTCTGGTTACAGCTCCCAGTACAAATCCTCAGTCTCCAGCCAATATGGCCAGGCTCCCCCCATGCAACAAGCCCCTCCCATGTACCAGGGGCAATCCATGTACCAGGGGCAATCCATGCAGCAGGGGCCTCCCATGCAGCAGGGGCCTCCCATGTACCAAGGGCCTCCCATGCAGCAGGGACCTCCCATGCAGCAGGGACCTCCCATGTACCAGACCCCGCATatgcagcagcctccacacatgcagcagcctccacacatgcagcagcctccacacatgcagcagcctccacacatgcAGCAGCCTTCTCACATGCAGCAGCCTCCTCACATGCAGCAAAGCTCCATCCAGATCCCTGTGGGCCCTCCCCCACCCAAGGTGGTCAGCACCGCCTGCATCGTGCCAGCTCCTGCCCCTGTTCCACCCCAAGCCGCCGCCCCTGAACCCCCCTCCAGCAGGCCCCCCTGGATCACTGATGACTCTTTTGCGAACAAGTTTGACCCCAGCAAGACCACCAGCACCAGCATGAAAGTGCCTGCTCTACCTCAGAGTGCCCCACCAGCACCGGCCTATATCCCACACCCTGGCTCTGCCCACACCCCTCACTCTGCCCCAAGTCCTGCCTATAACCCAAGCCCTGCCCCCTACAACCCCACCCCTGCCCCTTTCAATCCCGTTGCCCGGGGTGTGGCCCAAAGGGCGGAGCGCTTCGCTGCCAACAGCAACAGAGCACCCCTCTGTGGAGCCTGCAACAACATGATCAGGGGACCCTTCCTGGTGGCCCTGGGTCGATCCTGGCACCCAGAGGAGTTCAACTGTCACTACTGCCACACATCGCTGGCAGACTGCAGCTTTGTGGAGGAGCAGAACGCAGTGTACTGTGAGAACTGCTACGGAGAGTTCTTTGCCCCCACCTGTGCCCGCTGCAACACCAAGATCATGGGGGAGGTGATGCATGCTCTGCGGCAGACATGGCACACCACCTGCTTTGTGTGTGCTGCCTGTGGCAAGGCCTTTGGAAATAGCCTCTTCCACATGGAGGACGGGGAGCCCTACTGCGAGAAAGACTACATTTCACTCTTCAGCACCAAGTGCCATGGCTGTGACTTCCCAGTAGAAGCGGGAGACAAGTTCATTGAAGCACTGGGTCATACTTGGCACGACACCTGCTTTGTCTGTGCGGTGTGTAATTTGAACCTGGAGGGCCAGCCCTTCTACTCCAAGAAGGACAAGCCACTGTGCAAGAAGCACGCTCACGCCATCAACGTGTAGATGCTCCATCTGCAGTTTTATGGGGTGGTGGGCAGGTGCTTACGTAGCTATGCCCAAGCCTTGGCAAAGAGCCCAGTAGAGGGCATTGATGCCAGTCAAAATGATGAAAAAGCTGAAGATGATAGCAGCAAGATTGACTGTTCAGCAAACCGATCAATCAGGCGTGACAAGATTTTAAGTATTTTCATCAGTACTGAAATTCAAGACAAACTGCCTAAAATgctgcagcccccccccccccccccccaaacatgtGTTACGTTTGTATTTATTAATATCACTTACAAATGAATTATATTGTATGTCAGAGAATTCTGATGTAAATCCTTTGCTACTCCACTCAGATCCTGGAGGGCCTCAATCCAGTAAGGCTGGAGCAAAAGCCTTAGCGGCCTACAGACACAGGCAGACTGAGTGGAGTAGCAGGGCAATCAGTAAATAAGATGCCTTATTTCACAGGAACACTGTGTGCTTTGTGTTGTTGAATGTCAAAACCCAAATAGCTTGCAGTGAATGTCATAAGATCGTTTTAGTATCACATACAGTAGATTTAACATGATGATGCCTCACGCCGACCAACAGAGCACAGAACGTGAACCGACACAGTATACTGTAGCATGACACATGCAGGCCTACGAACGCTGTTTGATTTCACAAAGGTATTATTAAAGTGGACAGTTTAGTAAGTGATATTTATTGCATCTTTGGCAAAGTGTTATTTATTTACATAGAATAAAACGGAAGTATAACATCCATGGATGTTTAGATTGCTGATAAAACGAAACAGTTATATTTGGGCTTTTGCTGAATGATTTAGTTTTTTATGCATGCAGTTGCATCATACAGAGGTTCATAGTATCATATGGAGGACCTGTCACTCACTCTTTCATcctggatttatttatttatgatatACAAAGATGGTGCTCTGTTACATTATGATACAGTAATACTATACCAACTTTGGGGATCCAGGTAGAAGATGAGACAAATCTTTGGATATATTTGAACACTTTATGAGGTAGGGAATTCAGGTTTTTTGGAATGTGTCTCATAAACTGGGATTTGCTCCTGACTGGAAATCAAGGAACCACTCTGTGTCTTTTGTAGTATGTAATGGGGATTTTGGGGAGGTGCACCGATTGGTGGACAAGAGCCAGAAAGATATGTCACAGTGGGCCGCCGGACTATTGTGTCTCTGAATTGCGCTTAAGGGAGACGACCTCTGGCCTGGGGTCTTACAGATACATTTTACACAACAGATGTCTATGCATGGTGATATGCCATACACCTGTATGAAGCGCTTAATTTAAACAAGAATATATAGGAAATGTCtgtcaaggtaaaaaaaaatatataaaaaaatacagcCAAACACAATCATTTCTCTCTCACTAGCACACACACCTTAAAGGTCAGTTGACAGTGTGCTTGTGTACAGACTTTATACTTTCAGAGTTTATTTTATACATCTTTGTGTATGTTCTGTatttgtgtaagtgtgtgtgcatgcatgagtTTGTACATGATTGTCAGTGCATGTCTACTGAGGCAACATCAGTATTAGTTATGTATCTGTGCCACTAGAGTAGCAAAGCATACTGTGATTTTGCATAACACTTGAGTACTTTTGatatgcatactgtatgtgtgtagatCAACTGGTAAGAAAAGCACAGTCCGTGCCAGTTCAGAATAAACTTTACATGGTACCATTGGCGGGAAATGAAGACGGGCTTGAATTGTTGCTAAATAGTTGTTTACTGAAAGTTCAGCGTATTGAAACTAGTTGTATAGTTTCCAACCACTAGAGTGCAACAGAGTGTTGACACCATTCTGCTACTTGGCATGCCTCAGACACTAGTCACTACATAGTACACTCACTGTATGTTCCCTCTGTCCCCACTCCAGCAAACACTACAAAGCCATTTGTCACCCCTGTGGACTTCGTTTCCAACAGTTCAATGTCAAGCTTTATTTCCAGGCCCCATGTATCAACCAGCCATGTCATTACACTAACTCCATAATCAGAAATTGTGGACAGCATAGGGAAAACAATTGTTAGGGTTATTTAGATGGTTcccctttttaaaaaaaagactATTGCGTCAACATGATGATAGAAATGCTGTGCATCCCATTGAGGCTAGTCTTAGACAATCAAATGTAGTGTATTTTGTGTTACCTGGTATCTGAAGGACCATGTCAGCAACCCAAAATGTCAATATCGCTGGTTCCAATGCTCACACGTGTCCTCTGTAGTCAACATTGGCAATAATAACACAATGAAAGAATAGTTAAGGACATAATTAAGGAGGACACAGTTTTATAGAATTTCACAGTCCATTCCCAAATGACTAGAACTTCTCTCTGCCGTCAGGCATTCATTCCATTTAGGTAAGAGGTCTCTGGTGCATCTCTGTCCTCTGTAACGAGAGACTTAAGTAGCCTTCATCGTTCTCTTCACTCTTGACACGTCCCTCCCTCCTGGCTAGTTCTCACTAAACACACGGGTTACTTTGCAATGACACTGTATTAAGACCATCCTTTTCAATTTCAGGATGCTGAGTGGTCTTTTAGATGTTGGTTCACACATGACTTCTGTATGTACTGCTGTTTAGTAAACACGGGTGAGGCTGCAAGGTTTATATCCAATGTGCAAAAGGGATTGCTTCTTCTTCCATGTTCTGTGTTTTGATCGGGGaaagtgatttttttttctccatagtAGTATTTTTGTTTTAGAATAGATGATATATACTTGGCATGAGATAACAACCGCACTCTTAAATCGGATCGTTGATTTACTCGTGTTTTTGAAGCAGCAACTGAAATGTGGCTTTGATCTTTGAGTAGTTGTAGGGcgtcaatgttttttttctttggcATGGACTGTGTTGGAGGAATGGAGTTGTTGTCATTGTTCTGTTGTACATGTATTAATAACACCTGAATTAGTGGTTCATCTCTTGCTGCATTTGTACTTAGAACCCTATCGTCTATATAGACGAGGTCTTTTTTTATGTGGAACGTTGATTGTGTTTGGATTGTAACCCCATATTTCAAATGACTCACCCTGCCTGGCCTACCATAACACGAACTATACTTAGAAATAGGAACATGTTTCATGCATTGCTTTATTTAGTGAAATGCATCTGACTGCTATCAGAACAGAGTTACATGGAGAAAGGATATACCTTGACGATTGAAGAATTTAACAGGAGtctatcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatctgtcttgGGAAGGAAATGTGCTTGATTTCGTCTCTCTTGAGAACTTCCTGGATTGGGCAATGTTTGAAGGGCCTTAATTTATGCATGCTGTAGCCTATTAAATACCATGACCTTAATTTATATTGTTCAGCAAAGACTACGAATCAccattatgtttttgttttacaACCACAAGTATGCCTGTATTACCAGAGTCAATGTTGAGAGGCTGCTGGTATCTCTAGGGGGTCGTTCCACAAAATGGGTGCCTCTTGCATCCGTTTGATATTTAAGTAGAACTTGTGCaacaatattacattttaaaagcctgttatattaaatgaagtgcccttttaATACCGAGCATTTGGAGAATccaataaatataaaaaaatttaTGTGAATAAAGGCTACctaaagtgccaaaattcagcattttgtGTGTGCCAAAGTGCCAAAATTCAGCCCCTCCGTCAACCGTGTCACTTCTTCTAGGAAGATTTCAACCCACTTACTCAAAACATTTCTCCAAGTGTCACCATCGTTGTCCTAGTTATTTTTTGTTGCTTTTACAAAGTCATTTGAAGATGATTTATTTTGTGTGATTATTGATTCATTTACTCCTGTCCCTCATTTTGGTGATccctgttatgtgaactgaacttttgttttaatatggtgaaactatttcttttaaacaattttttttaaaggaaagtTTGAACATTAATTGTCAAATCATAGTTTAAAAGCAGGTGATATGGTTGGACtatttttggccattttctggtgttttgtggtgggaaACTGAGCGGGTCGAACATAACACGTCAacactgttacccatagataggcTAGAAATGGTTTAGCTGTCTATTTCTTTTTCATGAAGAAGATATTCACTTGCCACTCCCTGATGCACAGAAGCATCCATTCCCCTTGTCACAGGGGGATTTATGGTTGATTTAAGAAGAAATCATCAACCCCGTTactttattttgatttgatttatttggcACTTTAATAGGCCCTTTCTATAGTCatttttgttatttaaaaaaCCTCTTGAGATGAGAACATGTTTTTTATGAATTTGAACATGTGCGCTTGACAATGTTAaattacacttctcaaaaggcactgaattggtggaatgaccctAGGATGGTTTGAATCTTTGAAATGTGTCAATAAATATTTTAATTCACAA

Function

GO: NA

KEGG:

id description
K19867 PDLIM5_6_7; PDZ and LIM domain protein 5/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2105126 lncRNA downstream 59594 18373936 ~ 18374958 (-) True LOC110502384
TU2105092 lncRNA downstream 107262 18311011 ~ 18327290 (-) True LOC110502380
TU2105055 lncRNA downstream 217141 18213772 ~ 18217411 (-) True G1838322
TU2105032 lncRNA downstream 244629 18189566 ~ 18189923 (-) True G1838299
TU2104979 lncRNA downstream 263636 18138721 ~ 18170916 (-) True G1838254
TU2105280 lncRNA upstream 115336 18618299 ~ 18619145 (-) True G1838521
TU2105398 lncRNA upstream 301114 18804077 ~ 18805565 (-) True G1838628
TU2105481 lncRNA upstream 438324 18941287 ~ 18941544 (-) True G1838709
TU2105483 lncRNA upstream 439318 18942281 ~ 18943024 (-) True G1838711
TU2105488 lncRNA upstream 443780 18946743 ~ 18946960 (-) True G1838716
XM_021580364.2 mRNA downstream 412 18373928 ~ 18434140 (-) False LOC110502384
XM_036959688.1 mRNA downstream 412 18373928 ~ 18434140 (-) False LOC110502384
XM_036959690.1 mRNA downstream 412 18373928 ~ 18434140 (-) False LOC110502384
XM_036959689.1 mRNA downstream 3449 18373928 ~ 18431103 (-) False LOC110502384
XM_036959996.1 mRNA downstream 107223 18316871 ~ 18327329 (-) False LOC110502380
XM_021580372.2 mRNA upstream 24403 18527366 ~ 18601530 (-) True LOC110502386
XM_036959699.1 mRNA upstream 121346 18624309 ~ 18651217 (-) False LOC110502387
XM_036959698.1 mRNA upstream 121346 18624309 ~ 18655710 (-) False LOC110502387
XM_036959693.1 mRNA upstream 121346 18624309 ~ 18699092 (-) False LOC110502387
XM_036959697.1 mRNA upstream 121346 18624309 ~ 18699092 (-) False LOC110502387
TU2104675 other downstream 704040 17725263 ~ 17730512 (-) False LOC110502361
TU2104686 other downstream 715348 17709772 ~ 17719204 (-) True G1837980
TU2104595 other downstream 1009232 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other downstream 1010153 17423475 ~ 17424399 (-) True LOC110502353
TU2101534 other downstream 2686817 15745638 ~ 15747735 (-) True G1835092
TU2105357 other upstream 346734 18849697 ~ 18854172 (-) True LOC110502394
TU2105797 other upstream 609079 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2106048 other upstream 782433 19285396 ~ 19297744 (-) False LOC110502408
TU2106041 other upstream 875609 19378572 ~ 19385042 (-) True LOC110502408
TU2108760 other upstream 2440344 20943307 ~ 20943615 (-) True G1841694

Expression Profile