RNA id: XM_021580372.2


Basic Information

Item Value
RNA id XM_021580372.2
length 4090
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110502386
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18527366 ~ 18601530 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATCCATGTACAAAAATGTGCTATTAGGGTTGCGTGACTCGCGCGCAACCGCGTATGCCGCCCCATCCTCTTCTGCGATTGTCAAACTGTTTTATACCACTGTGTCTCACCGACTACCAATATCAAGACCATAACCAACGTAAACTGTTAGTCAACATTCACATCGAGAATTGATAACTTCCCAAAACAGATTCCCACTGTGGAGCCAACGAGAAGTTCTAATTTCCTCAGTGTATTTGCCTATTGCTGGAACACGGACCGGACAGCTGTCGGATTGTGTCAGTACTCCGGGCTATTTTCTATTTTCCCACCTACAACCCATGTCGAGTGGCCGGTCCGTCCTGGAGGGCACGGGAGGAGCTATGAACGGCACCCTGCGCTCGGTTCGGAAGGGCATCTCATGTCGGTTCCAGGACCCAAACTGCACGCGCAACGTGGAGACGCTTTCCTCCTGGAATGACACCGTGGTCAATGAGTACCGGCTGGTGGATCTGCCTTCTGTCACCTCTATGGCCATGGTGCAGGAAGCCTCTCGCCACCCCTTCCCAACTGTGGATGTACCTGACCATGTCCATTACACTATAGGGGTAGTCATTCTGGCTATCGGCATCACCGGCATGGTGGGCAACTTCCTGGTTATCTATGCCTTCGGCAGGAGCAGGTCACTGAGGACTCCGGCCAACATGTTCATCATTAACCTGGCCATCACTGACCTCCTGATGTGCCTCACACAGGCACCCATCTTCTTCACCACCTCCATGCATAAAAGATGGATCTTCGGGGAGAAAGGCTGTGAGCTATATGCGTTCTGTGGGGCTCTATTTGGGATCTGCTCTATGATCACTCTGATGGTGATAGCAGTGGACCGCTATTTTGTGATTACACGTCCACTGGCCTCCATCGGGGTGCTGTCCAAGAAACGAGCCCAGCTCATCCTCATGGCTGCCTGGGTCTACTCATTGGGATGGAGCCTGCCCCCTTTCTTTGGCTGGAGCGCCTATGTTCCAGAGGGCCTGTTGACCTCCTGTTCATGGGACTATGTGACCTTTACCCCATCAGTGCGTGCCTACACCATGCTGCTCTTCACCTTTGTCTTCTTCATCCCCCTCATCGTCATCATGTACTGCTACTTCTTCATCTTCAGAGCCATACGTACAACTAACAGGGCTGTAACCAAGATTAATTGCAATGGGAGCACCAGAGACTCAATTAAGAGTTTCCGTCGGCTGAAGAATGAGTGGAAGATGGCTAAGATTGCTCTGATAGTCATCCTCCTCTATGTAATCTCTTGGTCCCCATACTCTGTTGTGGCCCTGACTGCATTTGCAGGGTATGCAGATTTTCTGACCCCATACATGAACTCAGTTCCTGCTGTGATCGCCAAGGCTTCAGCCATTCACAACCCCATCATCTATGCCATCACCCACCCCAAGTACAGGATGGCCATAGCCAAGTACATCCCATGTCTgggtgtgttgctgtgtgtacgTAGACGTGACCTGCGCTCCACCGAAAGCAGCTTCATGTCCACCAGACGCTCCACTGTCACCAGCCAGACCTCCGACATCAGCGATCGCTTACGCCGCACCAGCACCGTCAAGTCCCGCCTCTCCTCCGCCTCCGACAGCGAATCGGGCTGGACAGATACTGAGGCTGACCACTCCAGTATGGGCTCCAGGCCGGCTAGCCGCCAGGTGTCCTGTGATATCAGCAAGGACACAACCGAGCTACCAGCCCTCAAGACTTACAGCTCCTCCAGCTTCAACTCCAAGATGAAGAGCAACGACTCTGGCATTTTTGAGAAGGCTGGTGATTCGTCAGACGCCATCGTAACGAGAGGAATGATTGGCCAGATTCCCAGCATCATCATCACCTCCGAGACCAGTCCTTTCTTACCTGTCCTTAGGGCCAGTTCCCGTGGTTCCCGTACAAGGCCATCCAATGGCAGTATAGATGTGGGGTCTGTTATTAAGGAGCCACAGGAGAGTGTCCAGCAGAGGTCAACACTTCCCAGTGATGCCTCTACACCACTCATCTGATCACAACCACAGTACATGATAAATTATAATAAATGCCAGGGTCTGTACTCAACATGAAACTTTTCTACAAGTCAAGTTAACCCCCATGTGAATACTCTTGCTGTACGTTCTTTACTGAAAaggttttgttttgttgttttgttaatgTGGTACAACCAGGGCCGGCTCCAAGCATGCGACATAAACGGTCGCTTTGGGGATCCAGCCGCCATGGGGCCCCCGAACCAGGAACTAATTTCAGGTCTCAACATACTGTTCTCTACACCACATTGCAAAATGTCAGGGAAAAGTACCATAAAACTAAATCAATGTACTCCGCCATCAACAGGGAGGccacagtggggggggggaatGGGAAATGGGATTGGTTGTGTCGTCTGCTAAGCTTTCACCTGGTCCTCTTGAGTGAGCTACAATCGTAAGGACGTCTGTAAAATCAGACAGCAGCCCAACTGTTTCAAACCCATTTCAAACATTTCCCCTAGCCCAGGTCCCCTCATCTAAGATCTGCTAAAGGCTGAAACCGATTAAGTAGAACTATTGTGTGAAGTAATGCAGACATGACTAAAAGAGGCTGAGCTGGAATCTATCTTAGCTGGGAGATGCTGGAAATGTCAGGCTGTCTAGGGCaggggttctcaaacctctcACCGGGGCCCCCCAGCTGTTCAATGTAATTCAACTATTCCACAGCttgcacacctgattcaaatagtaaattaatcatcaagcccttgactatgTGAATCTGGTGAGTTACAGTAGTTCACGGTTACAACAAAATTGTGAAGAGTCTGGTGTTCCCCGGGGAGAGGTTGGAGAACCACTGGTCCAGGGTATTGATTGAAGTCCTTAATGTGGGTCTAGGCTGTAGTCAGCCCAGATTCTTTCTCGAGGCCCGTGGCCTGTGTGACAGGATCTGGGCTGACTACAGCCTGGACCCACATTAAGGACTTCAATCAATACCCTGGCCTTAAATGTCTTGAGCATTAGAATGTGTAGGACGCTGCACAATAAATCCACAACTCAGGGCTGAATTCGATAGAACCTGCAATTTGATTGAGCAAGACAAATTCCTTCTGGATGGTAATAGAGTATTATATTGCTGTATTTACGCAGTATAGCTCTTTTCCCCATAGACAAATCACTGAATGGTTTTAACTATTGTAGATGCGTCCAGTTTACAGAATAAGAAGTGGTTGGTCCATGGGCAGTAGCTTAGTTGGTAAACAAAGACACTGCAATAACATTATCTATGGCGGATTTGAATTCCAGCCTCAGTTTCTCATCCGTTCCTCTGACTTCAATCACCAGACTAGTGTTAACTAATACTACTGTGTTTTGATGGAACCAAATAGACTGACAGGCTACAGGACACAATGGTTGAGAGTGATTGATAACACTTGTAATGAGAACACAAAAAGTGGTATTCATATGTACAGGTAAACAGTCCATGTGCATCTGTTGAGTGTCTGGTCTCCTATTTATTATGGTCTCCTGCTTTTTAGATTATGCTTGTAATAACGCAATGTAAAATTGAATTTGCTTTGTAAGAAGCTACATTTATTACCAGTAAGTATTGAATTTACAACATTTTCAATATTTTAAAAAGATTTCCACAGTAAGATAATCATACGTATTTATATTTCTGTACCGCGGGGGTCTTTGTGATTGTAATTCATGGGAGAATCGGTATCAGACAATTCATTATGGAGCTAAGTGCTCTAATGGAACAGTTGAAATAACGGATGATGGTTCCAATATTCCCTGTGCTTGTATGGGTGGGCAAAAGGGATATTATTGTTGGTTATACCTCGGCTGTTAAATAGCTTACACTAAAATGGGTCTGTAGTGAGTTTCAATACAGAGCACAACTATAATACATGTGACTATAATGATATTATAGAATATGAAAGATTTCACCTTAGTCTATAATAGCTCAGAAACATAAAACATAAAATATTGAGCGAAGTGCAAgaggtgtttgttttgttttccaaTTTGGAATGGTCGAATGCGAACAgaaaatgaccccccccccccccccccc

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0009584 detection of visible light biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
K04255 OPN4, Rh2_7; r-opsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2105157 lncRNA downstream 43577 18466496 ~ 18483789 (-) True G1838416
TU2105126 lncRNA downstream 152408 18373936 ~ 18374958 (-) True LOC110502384
TU2105092 lncRNA downstream 200076 18311011 ~ 18327290 (-) True LOC110502380
TU2105055 lncRNA downstream 309955 18213772 ~ 18217411 (-) True G1838322
TU2105032 lncRNA downstream 337443 18189566 ~ 18189923 (-) True G1838299
TU2105280 lncRNA upstream 16769 18618299 ~ 18619145 (-) True G1838521
TU2105398 lncRNA upstream 202547 18804077 ~ 18805565 (-) True G1838628
TU2105481 lncRNA upstream 339757 18941287 ~ 18941544 (-) True G1838709
TU2105483 lncRNA upstream 340751 18942281 ~ 18943024 (-) True G1838711
TU2105488 lncRNA upstream 345213 18946743 ~ 18946960 (-) True G1838716
XM_036960847.1 mRNA downstream 24403 18434552 ~ 18502963 (-) True LOC110503086
XM_021580364.2 mRNA downstream 93226 18373928 ~ 18434140 (-) False LOC110502384
XM_036959688.1 mRNA downstream 93226 18373928 ~ 18434140 (-) False LOC110502384
XM_036959690.1 mRNA downstream 93226 18373928 ~ 18434140 (-) False LOC110502384
XM_036959689.1 mRNA downstream 96263 18373928 ~ 18431103 (-) False LOC110502384
XM_036959699.1 mRNA upstream 22779 18624309 ~ 18651217 (-) False LOC110502387
XM_036959698.1 mRNA upstream 22779 18624309 ~ 18655710 (-) False LOC110502387
XM_036959693.1 mRNA upstream 22779 18624309 ~ 18699092 (-) False LOC110502387
XM_036959697.1 mRNA upstream 22779 18624309 ~ 18699092 (-) False LOC110502387
XM_036959694.1 mRNA upstream 22779 18624309 ~ 18710368 (-) False LOC110502387
TU2104675 other downstream 796854 17725263 ~ 17730512 (-) False LOC110502361
TU2104686 other downstream 808162 17709772 ~ 17719204 (-) True G1837980
TU2104595 other downstream 1102046 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other downstream 1102967 17423475 ~ 17424399 (-) True LOC110502353
TU2101534 other downstream 2779631 15745638 ~ 15747735 (-) True G1835092
TU2105357 other upstream 248167 18849697 ~ 18854172 (-) True LOC110502394
TU2105797 other upstream 510512 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2106048 other upstream 683866 19285396 ~ 19297744 (-) False LOC110502408
TU2106041 other upstream 777042 19378572 ~ 19385042 (-) True LOC110502408
TU2108760 other upstream 2341777 20943307 ~ 20943615 (-) True G1841694

Expression Profile