RNA id: XM_021580378.2


Basic Information

Item Value
RNA id XM_021580378.2
length 4248
RNA type mRNA
GC content 0.58
exon number 4
gene id LOC110502390
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18777758 ~ 18787759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctcccctctctctctctttatttcagcTCCTCCAGCCTGCAACCCTATCAGCATTGCTCATACTCAgagtgtgtgtgggcatgtgtgGGTGTCAAtggggagagtgtgtgtatgtgtgcccagGTGCCAGAGTACGGGCTGAGAGAAATCAGCTCCAGGACATTATAGCTGAAGGAGAGTGGACAGAGCCCTCTGATGGGGCCCTGACAACTATGGAGCAAACGCATTGAGGGCCCCTCCGCCCCAGAAAGACAAAAAAGACAGACAAACGGACAGAAACACAAAAAAGGGGAAGGTATCACACAATAATGGTGTCAGAAGAAGTTGTAATCACCTTGTCCGGTGGAGCACCATGGGGCTTTCGTCTCCAGGGGGGCGTGGAGCACCAGAAACCACTTCAGGTGGCCAAGGTGCGTAAGCGCAGTAAGGCGTGCAAAGCAGGACTGCGGGAGGGTGATGAGCTGGTGTCCATCAACGACCAGCCATGTGGAGGTCTGTCCCACGCCCAGGCCATGACCATAATCGACAGCTCCCCAGGAATACTACACATCCAGGTCAAGAGGGCGCCGGCAGGCTTCCAGTCCGTGGTGCTATTGACCCGCGCCCCATCACCCCGTATCGACAAAGAGTACCGAGCCACCCTGCGCGCCATGTCCCCCTCCTCCAGACTGCACCACACAGCCACTGTCATGGAGGTCCCCCATGGCAGGTCCTCCCTCCTATCCCCCATGGTGCGCAGATGCCTCACCTCGCCCCCAGGCAGCGAGGCCTACTACGGGGAGACAGACAGTGACGCAGAAGTGGCGGCCAACGAGAGGCAGAGGAGGCAGAAGCACAGAAATCCCAGCAACTTATCCGGAAAAGCCTTCGGTAGAGCATCCCCGGAGGGAGGGGAGACCTCAGAGTTTAGCGGCTATGACAGTGCCCCAGATGCCCGGGTCTACCCAGGCATACTGGATggcagaggagggggggagggccTGCCAGGGGTGGCCCGCAGGGAGGTGATCTACCAGCCCCCTCCAGGGATGTGGTCCTCCCAGACCTCCACAGAGACATCCTCCATCATCTCCTCGGCTGAGGAccaggtctcagggcaggacagagTGATGGAGGAGGACAGAACCTTCCAGGAGCCATCCAACGTTGTCCCACTAGTGTCACCCGAGAGGGCAAAGGAGGCCATGCAGCTGAGCTCCCGTAGGCAGATGGTGCCCATGGTGGGGCCTATAGACACCCCTCTGGACGAGGAGCTCAGTGTCACCTACATGGACAAGGCCAAGCAAGCCAAACTGAACCGGGGTGACACGGTTCAAGACAAAAAGGTGAAGGAGGCCAGAACCAAGTGCCGCTCTATCGCCTCCCTTCTGACAGACGCCCCCAACCCCAACTCCAAGGGCGTGCTGATGTTCAAGAAGCGCAGGCAGCGCTCCAAGAAGTACACGTTGACCAGCTTCGGCAGCGTGGACGAGGACATGCAGCACAATTCCCCAGAGGAAGATGGTCTCTTCCCAGGAAGCGAGTCGGAGTTTGATGAGGATGGCTTCTCGGCCGCCCCCGACACCACCTGGGACAGTGACTACCTGGATGCGCTGGAGAAGAGGGCGACCGCAGGTGGAGAGCGAGGGGACGGGGCAGAAGATGCCCCCAGTCCCGGCCTGAGTGACATCTCTGGGAAGGGCGCCCAGCTGTTTGAGCAGCAGAGGAAGAGGGCGGCCGAGCACGCCAAGAAGGTGGCTGCCGCCCAACCTCAGATAAGGACCCAATCACCGAACCAACTACAGATCCAGGAGCAGCCTCAGCCATATGTACAGAGCCAGCCCCAGCCAAAAACACAACCACAGATGTACCAGTCTCAGCAGCCTATGGCACCACCGCCCCTTGTAGCCTTCCAGGAGGAGGCTCGGTCTGTGGCAGAGGGGCCTATGGCACCGGCCCCAGCTGCTCCTACTGCCTACAGCATGGCTAATGGAGACGTCGCCTACTCTCCAGTGAGCACGGCTGGCATGGTGATGTCACCCTTGACTGTGGCACCCAACCCAATCACCACCCAAGTGTCAATCTTAACCACTCACATACCTCCACCCCAAACACCGCTGCCAGAACTCTCCTCCAGCTCTGTTCTCAACAGAACAGCCCGCCCCTTCAACCCAGGGTTCGTGACCAACCGAGCCGCCACCGCTCCTGTTGTGTTCCGCCCCGTCGTCACCAAAAGTGCCCCGCGCCCGGCGACCTCTGTGTCTATTGTAGGACCTCCCTTCTCCACCTCATCAGAGCCGCCTCCAAGTGGTAATCCCGCCTTCTTCTCTCCCCCGTCCTCTGTGTCCAGAGGACCCTTCTCCACCTCAGCCTCAGCACTGGCGACTCATCCTCGTCCTGCCTTCTCTGTGGAGAACCTGGCAGAACCACCCATGCCCTCTGTTCCACAGGCTTCCTTCACAGCCATACCTCCACCCCCAGCACAATTCTCAGGTGGCCCCATACCCCCACCTCCAGGATCATTTGCCAATGTACCCTCAATTCCACCCTCATCACCATTCTCAGGTGCACCCATACCCcaagccccagtctcagtggctCAATCAGCCCCAGCTCCAGTGTCTTTTGACCCCATACACCAACCTCAAGTTTCTGTTGCCCAGATGCCCCAAGCTTCTGTCTCAGTTGTCCCACTCCCAAACCCCACAACTCCAACACCTATACTCAGATCCCCCATGTCCAAGGTCCCACCTGCCCCTGGTGGTCGTACCGGCATCCTCCTGGAGGCTCGTCGGTGCAGCGGCAGGAGGCCCATGTTTCGAGTACCTGCTGAGAAGAAGAACTCTCCCAACCCTGACCTGCTGAACATGGTGCAGAACCTGGATGACAGGCCCCGCTACAGAAGCTACTCAGAGAGTGTGATGGGCTTTGAGTCTGGTGCAGAAGAAGACCAGGGTGCTGAAGTCTGCCGGGGAAGGATGCCTCCACTGGTGGCCCCCAAACCTAGGGTCATCCACGAGGCCCCTCAGATCCCCCAGGAAGAAGGCAAGGGGGCTCAGCTGTTTGCCCGCAGGCAGAGCCGCATGGACCGGTATGTGGTGGACACTCCACAGGAGACCGCCTACCGGCAGGAGGTCTCCCACCCAGGGGTCGGGCCCCAGGATGCTCCCAACCTCGATATCAACTCACAGTGGAAGTTATCCCCCAACATCCGCGCCCCCCCGCCTATCGGCTACAACCCTCTGCTGGCCCCTTCCTGTCCTGTGGGGCCACAGAGAGATACCAGCAGGTCTGCCAGGGGGGACTGGGGAGGTAAAGGAGGGATCGCCTTTCAGAGGGAGGGAATCAAAGCTCTGGATTTCATGAGAAGGCAGCCTTACCAGCTCAACTCAGCTATGTTCGGGGGTAGTGTTGCCAAGCTGTCGGCGATTCCCTCCTACCAAGACCAGAGGCAGCAGCAGGGAGGGTACACTACTATGGTGGGTAGCACCATGACCCCTCCCAGACAGATCCCAGTCAAAGCGGCCCGTGTGTATGAGATCAAACGCTTCTCCACACCCACGCCCATGTCAGCCCCGAGCCTGGCCCCCACCGTAATCGCTCCTCGCTCAGCCACAACGCTGGGAGAGCGCTTGACCCGCTCCGATATGATCTCCCCaacccctgctcctctctccccaccccctgcccCTTTCTTTGCCCCAGCTCCTGTCTCTGCCTCACCTTCCGTCCTTGCTCCTACCTATTCAGGGGGCCTGCCTGGACTGCCCAGAATCAATGTTACCCCTGTCCGcaaccccatccccatcccagcaCCCTATCCTGGAGTGTCCTACAGTGGGCTCCAAGGAGCAAAGCAGTTTCAGAGTGCCCCTGAGCTTAGTTTCCTTGCTAACCTTCCCACTCCCCTAAGGGCGAATGCCATGCAGGCGCCAAAACCCCGCTTCATCGCCACCAAGGTGGGCGTCCAGCCGTGTGTGTGGAGACCAGGTGCCATGTGATCAGGTGGGAGTGGGAGACTTTGTCTGTCACTAAGAACTGGACACATCTCAGCCATAAAACAAATATCTGCAAAACAATAAAGTAATAAGGTGGTCAAATACTGATCAATGAGCTTGTTCAGTACCTAACAAAAATGTTTTTAcgagtgccttgcaaaagtattcatccccccatttttcctattttgttgcattacaacctgtaatttgaatatattttttatttggattttgtaatggacatacacaaaatagtccaaattggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2105280 lncRNA downstream 158613 18618299 ~ 18619145 (-) True G1838521
TU2105157 lncRNA downstream 293969 18466496 ~ 18483789 (-) True G1838416
TU2105126 lncRNA downstream 402800 18373936 ~ 18374958 (-) True LOC110502384
TU2105092 lncRNA downstream 450468 18311011 ~ 18327290 (-) True LOC110502380
TU2105055 lncRNA downstream 560347 18213772 ~ 18217411 (-) True G1838322
TU2105398 lncRNA upstream 16318 18804077 ~ 18805565 (-) True G1838628
TU2105481 lncRNA upstream 153528 18941287 ~ 18941544 (-) True G1838709
TU2105483 lncRNA upstream 154522 18942281 ~ 18943024 (-) True G1838711
TU2105488 lncRNA upstream 158984 18946743 ~ 18946960 (-) True G1838716
TU2105492 lncRNA upstream 160994 18948753 ~ 18948980 (-) True G1838720
XM_021580374.2 mRNA downstream 17216 18740296 ~ 18760542 (-) False myoz1a
XM_021580375.2 mRNA downstream 17216 18740296 ~ 18760542 (-) True myoz1a
XM_036959692.1 mRNA downstream 39462 18624309 ~ 18738296 (-) True LOC110502387
XM_036959696.1 mRNA downstream 39464 18624309 ~ 18738294 (-) False LOC110502387
XM_036959695.1 mRNA downstream 67358 18624309 ~ 18710400 (-) False LOC110502387
XM_021580384.2 mRNA upstream 35825 18823584 ~ 18828494 (-) False LOC110502393
XM_036960763.1 mRNA upstream 35825 18823584 ~ 18828968 (-) True LOC110502393
XM_021580385.2 mRNA upstream 61630 18849389 ~ 18854222 (-) False LOC110502394
XM_021580386.2 mRNA upstream 67198 18854957 ~ 18860989 (-) False LOC110502395
XM_021580387.2 mRNA upstream 67198 18854957 ~ 18860989 (-) True LOC110502395
TU2104675 other downstream 1047246 17725263 ~ 17730512 (-) False LOC110502361
TU2104686 other downstream 1058554 17709772 ~ 17719204 (-) True G1837980
TU2104595 other downstream 1352438 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other downstream 1353359 17423475 ~ 17424399 (-) True LOC110502353
TU2101534 other downstream 3030023 15745638 ~ 15747735 (-) True G1835092
TU2105357 other upstream 61938 18849697 ~ 18854172 (-) True LOC110502394
TU2105797 other upstream 324283 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2106048 other upstream 497637 19285396 ~ 19297744 (-) False LOC110502408
TU2106041 other upstream 590813 19378572 ~ 19385042 (-) True LOC110502408
TU2108760 other upstream 2155548 20943307 ~ 20943615 (-) True G1841694

Expression Profile