RNA id: XM_036960763.1


Basic Information

Item Value
RNA id XM_036960763.1
length 2873
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110502393
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18823584 ~ 18828968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTTTTACATCGCAACAACTATTTACAGActgaaatgtacattttttttggtTTCTGTCAATTTCAGCGGTTGCCTTGGACACATGACGCATCTCTGGGCCTTTCCTTGTAACCATGGAGCTGGGAGTTGACAGGGCCTTCCCAGCATACGTCTCTCCGATGGAGTCCAAGGGCTGCAGTGGGCGACAGAAGACCAGGATTCCAGAGTTTATCCAGAGGAGTGGGACAGGCAGAACAACCCAACATTCCAAAGACAAaggcgaggagaggaggaaaggggacagcGGTGGTTCCAGGAAGAATGCTGACATGGCATCCACCTCCGGGTATATGAGTGACAGGAGGCAGTACACTATAAGGACCCCGGTGGTCACCACCACGGAGCAGCAGCAGGCCTCCATCCTAAAGAAATCATACGTACAGGAGCACCCAGAAAACGAGCGACAGTGGGAAGGTAGCAGTAATGAAGCAGACCGTCATAGAGCAGACCATCAACAGTCCCCAAACAACCTCAACCCCTCTCAGGCTGACATCTCACCTTGCTCAGCTTCCAAAGAGGACCTCAACACCTCCCTGGGGATGTCAGACCTCAGGACCAGGTTGTCACATGAAGAACTCACCTTCAGGTCACCTGGGCAGCAGCCCCGGCCGACACAGCCCCTCCAGCCGACCCCTGGAGGTCCATAGCTTCTCTACTCCACTCAGACCCAAGTGGACCTCCACTCTGCTATCCTCCCTCTCGCCTTCCTACATCCCCAATTTGCGCCCCTccagacagagacggacagagcTGAGAATGGTCGCAGGTGAAGTTTATCAATCACgtgaagagggaggggaaacgtATCTAAATGTAGGCCCTTCAGTGGGCGACCCCCAGGTTCGCTCCAACCCTGCGCTCCACACCATGTCCCCCCACCAGGCCAACTCCTGGCCCTGTGCCATTTCCAGCTCCCTGCCCCACTCCCCAGACCGACACTCTTCGAGCTGGGACCCTGATAAGGAGTATCAGACCCTCCTGGACTACACCTACCCCCTGAGGCCAGGTAGGGGGGTGGGTGGATGGGATACCTCAGAGCTTGGGGGTGGGTCTCTCATTCAGACAGACCCAGGCCTCCTGGATTCGGGGATAGAACTGGACCGTCTCTGCAGCTCCATCAGCCTATCAGCTTTGGACTTTTCCCTAAGTGTCACGGCAGGGGTGGGCACTAGTAGGGCCAGGGAGATGGGGATGCTGGGTATAGGTCAGAGGTCATCTGAGCTGCGTGGGTTCTCACACTCCAAGTCCTCTGATGGTCGCCTCTCCACTAGccccttcttctctgcagaccctaTTGGTCTATCAGTAGAGAGTCTGGACTATAGTGGAAGTGGTGGTGGTCTGAACCATTCACATCGTAGCGGGGGAGGTCACTACCGCCAACATggcagctcctcctcctcttccaccacgTTCATCCGCAGAACCAGTATCCTTCCCCGGCCAGGGTACCTCGGAGAGTGGGATTTGGACGAGGAGTTCTGGCCTCTCCCGGAGCAGTTGGAGGAGCTCCAGGGTTTGTCCCAGCAAGTCAGGGAGGTGACGGCCCAACTCAGCCAATCTGTCACAGCCTATTGGGACTCCATGGAGAGGGGGAACACCTCCGTCCAGTCCTGCATGACCATGGCAGAGAAacaggaggcagaggaggagagagaagaacaggAGCAGAATAAGGAggaagaaagggaggaagagaaggagaaagaggaagagtcCATTTCTGAAGCACTTCAACACTTCAATAAAGCGAGCAATTGTGGGGAGTCCTTCCAGGCAGCCAGAGGCCCTGGTTTTAGGATGGAGGCTGGGGTAGTAAGCAGGGGAGTGAGAATGGCCAGTCTGAGGGAGGCGGCAGGCATGGTGGGTGGACTAACCCTGCCTGAGTTCCAGACGGGGAGCCAGGGGGAGCAGGAGCAAAGGGAGTCCCTCATGCAGCACATCCAGACCTTCTGTTCTAACCTGGAGGTGCTCATCCAATGGCTGTACACGGTGGTGGAGAGGATGGAGGTACTGGAGCCGCCCACTGTGGACATCAAGAGTGTCAAGTCATCCCTGGCGGATTATAAGAGGTTTCAGAGAGAAGTGAACACACACCAGCCCCTGACCACCTCTATTCTGCAAACTGGAGGGCTTCTCCTGGGTTGTTTGACCTCCACTTCTTCCGTTCTGAAAGAGACCCTCTGTCTTATTGAGAGGCAGTCCAAGGCGCTGGAGACCCACTCAGAGCACCACTTCTCCTCTATTATCTCGGTCATGGACAGACTGACCCAGCCCAGGGAGTCcagtgggagagaggagacccAGGCAGGAGACCCGGATAGGATGGCGGTCCAGAAGACCGCTCAGTGAAGGCTCTACGGTTATGTAGAGATTGGGATATGATTACTCTATAGCACCCTCTAGTGACATGTTATCAGGTTTATTATTTATCATCAGAAGAAGTGCTCTAGTCGCACAAACTGGAATAATATAATGGTGCAGATAAAGTTCAGAATTACATAATTTCACGTGTACAACATCTAATGACCTGTATCACTAAAATAatgtatttgggtgtttttggagcctttgttTGTGGTTTTCCACAGCCCCCATACTGCAGAGCATGCAACGAGGAAGTCTATTGCGGGTGGTTTCTCAAAACAAGGTGAAATCGCCCAAAAAGTGTCTGCACCCTTCTGTAGCATGCAATTTATATCACAAATAGACATTTGGTTAAAAAATAGTGAAACGATCCTTGCTGTGTTGAAAAGAGACCACTTGACTGTTGTCATGCTTTTGATTCATTATTTTGTTAAGTGCTTTTTAAATttaaagtgccttcagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2105398 lncRNA downstream 18019 18804077 ~ 18805565 (-) True G1838628
TU2105280 lncRNA downstream 204439 18618299 ~ 18619145 (-) True G1838521
TU2105157 lncRNA downstream 339795 18466496 ~ 18483789 (-) True G1838416
TU2105126 lncRNA downstream 448626 18373936 ~ 18374958 (-) True LOC110502384
TU2105092 lncRNA downstream 496294 18311011 ~ 18327290 (-) True LOC110502380
TU2105481 lncRNA upstream 112319 18941287 ~ 18941544 (-) True G1838709
TU2105483 lncRNA upstream 113313 18942281 ~ 18943024 (-) True G1838711
TU2105488 lncRNA upstream 117775 18946743 ~ 18946960 (-) True G1838716
TU2105492 lncRNA upstream 119785 18948753 ~ 18948980 (-) True G1838720
TU2105553 lncRNA upstream 122528 18951496 ~ 19016128 (-) True G1838778
XM_021580378.2 mRNA downstream 35825 18777758 ~ 18787759 (-) True LOC110502390
XM_021580374.2 mRNA downstream 63042 18740296 ~ 18760542 (-) False myoz1a
XM_021580375.2 mRNA downstream 63042 18740296 ~ 18760542 (-) True myoz1a
XM_036959692.1 mRNA downstream 85288 18624309 ~ 18738296 (-) True LOC110502387
XM_036959696.1 mRNA downstream 85290 18624309 ~ 18738294 (-) False LOC110502387
XM_021580385.2 mRNA upstream 20421 18849389 ~ 18854222 (-) False LOC110502394
XM_021580386.2 mRNA upstream 25989 18854957 ~ 18860989 (-) False LOC110502395
XM_021580387.2 mRNA upstream 25989 18854957 ~ 18860989 (-) True LOC110502395
XM_021580388.2 mRNA upstream 78114 18907082 ~ 18910807 (-) True LOC110502397
XM_021580392.2 mRNA upstream 254406 19083374 ~ 19092148 (-) False LOC110502401
TU2104675 other downstream 1093072 17725263 ~ 17730512 (-) False LOC110502361
TU2104686 other downstream 1104380 17709772 ~ 17719204 (-) True G1837980
TU2104595 other downstream 1398264 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other downstream 1399185 17423475 ~ 17424399 (-) True LOC110502353
TU2101534 other downstream 3075849 15745638 ~ 15747735 (-) True G1835092
TU2105357 other upstream 20729 18849697 ~ 18854172 (-) True LOC110502394
TU2105797 other upstream 283074 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2106048 other upstream 456428 19285396 ~ 19297744 (-) False LOC110502408
TU2106041 other upstream 549604 19378572 ~ 19385042 (-) True LOC110502408
TU2108760 other upstream 2114339 20943307 ~ 20943615 (-) True G1841694

Expression Profile