RNA id: TCONS_00053072


Basic Information

Item Value
RNA id TCONS_00053072
length 316
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_026617
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36953625 ~ 36954088 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGAACTTGATGACAGGACTAGTCTGGGCTCTGTAAAATACAATACTTGCTTACACCGCTTGCACACTAATGCGCCTGCTATTGAAACTCTTGCTGACAGAGCTAGCACGCTAACCTCTGCAGTGTCTGCACGAAGTGGCCAAAACTGTCCTAAAATTCACCAGATTTGGACCAGCTGTTCTGTCGAGATGATGAGCCATGGAGAGGCTGCAGGTGCCCCCTGCCAACACCCAGAAGACCCTATTTTACCCTGCTGGGAAACAAAGCAGCTGAAGCATTTCAAGAtctcataaaaacaaaaatagcttgATGATA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052478 lncRNA downstream 342601 36610334 ~ 36611024 (-) True XLOC_026609
TCONS_00053071 lncRNA downstream 366489 36583100 ~ 36587136 (-) True XLOC_026606
TCONS_00051832 lncRNA downstream 496317 36451635 ~ 36457308 (-) True XLOC_026604
TCONS_00051828 lncRNA downstream 512938 36439500 ~ 36440687 (-) True XLOC_026603
TCONS_00051826 lncRNA downstream 515099 36428956 ~ 36438526 (-) False XLOC_026603
TCONS_00053073 lncRNA upstream 15315 36969403 ~ 36972222 (-) True XLOC_026619
TCONS_00051861 lncRNA upstream 182330 37136418 ~ 37143881 (-) True XLOC_026622
TCONS_00053074 lncRNA upstream 627434 37581522 ~ 37584807 (-) True XLOC_026625
TCONS_00053075 lncRNA upstream 680012 37634100 ~ 37649261 (-) False XLOC_026626
TCONS_00051868 lncRNA upstream 680012 37634100 ~ 37649389 (-) False XLOC_026626
TCONS_00051854 mRNA downstream 8876 36904041 ~ 36944749 (-) False XLOC_026616
TCONS_00051853 mRNA downstream 21110 36904039 ~ 36932515 (-) False XLOC_026616
TCONS_00051855 mRNA downstream 21110 36920472 ~ 36932515 (-) True XLOC_026616
TCONS_00051851 mRNA downstream 107129 36836711 ~ 36846496 (-) False XLOC_026615
TCONS_00051852 mRNA downstream 114510 36836719 ~ 36839115 (-) True XLOC_026615
TCONS_00051857 mRNA upstream 105715 37059803 ~ 37082618 (-) False XLOC_026620
TCONS_00051858 mRNA upstream 110813 37064901 ~ 37082618 (-) True XLOC_026620
TCONS_00051860 mRNA upstream 181428 37135516 ~ 37148594 (-) False XLOC_026622
TCONS_00051862 mRNA upstream 281836 37235924 ~ 37476475 (-) False XLOC_026623
TCONS_00051863 mRNA upstream 285879 37239967 ~ 37351225 (-) False XLOC_026623
TCONS_00051846 other downstream 197476 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051819 other downstream 706830 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051818 other downstream 706903 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051816 other downstream 714584 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051795 other downstream 2005591 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051856 other upstream 13783 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051859 other upstream 121610 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051873 other upstream 719560 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051881 other upstream 813197 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051892 other upstream 1959290 38913378 ~ 38918717 (-) False XLOC_026635