RNA id: TU2105797


Basic Information

Item Value
RNA id TU2105797
length 2846
RNA type TUCP
GC content 0.43
exon number 6
gene id si:dkey-51a16.9
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 19111958 ~ 19145332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaagagagagtgggacGAGAGGAGAGCGGCTTCCTGGGTTAAAATGATCAGTGTTAGGCTAATTTTCGCTGTCTCCTTTTTCACCCCCTCTTTGTCCATTTTGGAAAAAGGGGAGCAGATGGTTGGGCCTGACAGAGCAGACAGCACAACGCAAGTGCAGGCAAAATAGCTGCTTTTACAGGAACACTGGGCACTGCAGGGAACCATTCAAGTTCTTCCTTTGTTTCCCATAATTAGCAGGTTTTCACAGCAAGAGAGGAAATCTATGTCGAGACGAGTATTCAAGGAAggcggaggcagagagagagagggagaggaaaacaggacttcaggggagggagggataagcCCTGTGACAATGTTTTGAAGGGGAGACAAAGCAAAGCAGCGACTGCACTCAGCTGGATAGATTGAGTTAGCTGCATGGGAGTTCTCTCTCCATTTGGAATATTAACAATAACATTGATGTGTCTTTAACCTGCGAGGGTATGATGTTTATCCCATAATATAAACACGGCTATGCTCTGGAAATCCCTTTGTTTATTTGAAGAGAGGAGCCATTGCGATACGGATATATTTGATTCTGTTACCTTTTCTTACTTTTTAGCATATTTTTGGATTTTAAAAAGTAGCTATCAATTCCTGATGAAATTGTTGCTTGATTATTCACATAATGACAAATCATCACAAAGAAGAGTGTGGATTTCAACAATGAGTGAGTTGTTTTTGTCATGTTTTACTGGAAACCAGAGCCTCATCCATAGGAGAGCTTCTTGGGGAACTGAGAATGTTTATCACAATGGGATTGACTCATAGCCTACAAATAAAAGTCATTTTCATTGGGGACACAGAAGAGGTTGGACTCACATCATTGTCTGGGAGACGGTGACTTTTTTGGGGGGACAACCTCCTCGATCTGTCGGCACCCCAACAAAGACCCAGGACTGGTTGTGACCCCAGACATAGTGACTCTAGAGGCTGTGAGTAACTTCAGACGTTTTTGACCCCCATCCACTGATTCCCTGGGTCCCTCTGGCTTTCTTGAGGCTGATTTCACCCAGTCCAGTGGGGTCACGGATCTCTGTGCGGTTTAGGGTCGCAGAGCTCAGACCCATACTGCAAGATGACATCGGAAGACATCTACCATCTGCCAATCAACATGTACGTCATCATTCTGGGCATCGGCCTCTTCATCTTCATGCTCAGCCTGATCTTCTGCTGCTACATGTTCAGGTTAAGGCGACAAGGCACAAGGGAGCAATATGGATATAATGAGGTTGTTTTGAAAGGAGCAGGAAAGAAACTGAGTCTTCTTGGACAGACCTGTGCCGTGTGCTTAGAAGAGTTCAAAAGCAGAGACGAGCTTGGAGTGTGTCCCTGCTCACATGCCTTCCACAAGAAGTGCCTGTTAAAATGGCTGGAGATCCGCAGTGTCTGCCCCATGTGTAACAAACCCATCTGCCGTTTGCAGCCAGACCTCCTACAGGGAGCAGAGAGGCCCCAGAGCCCAATGGAGGTGTGAGATGAGCGAGGGCCCACACTAGAGCACCTCAAAACCCCTAATTACAGTTCCAACCTGCCTCATCCCACTCCACTCCGCCAGACCCCTAAAAATCACACCCTGGTCCAGTTGAAATGAATCAGGCATCCCATCCTGGCGTCTTCCATATACCCCCATCCTAGAGTTCTGAAAGACTCTACTCTAGTTTTGAAGGTGTTAGACCCCTAAAGGTGTGTGTGAGATGAGACTTTGAAGTGGAACTCATAGAACAATATTGGAGAACAAactgaatgttttttttaatctaaAAGGCAGAGGATGGAGGAAGGACCCTGTCCCATGACCACCGGCCAACCCCTACAGGAGAAACAGTGGGTACTGAAAAAGAGTTGGGATGCTGTGTTTTGGGCCCTACTTTCCCAAATCATAGTCAATAACCCGCCATCCCATGTTGCCAAGTAAACATAGGGTGTCCTGATTGGTCGATGAGTAACATGGGGCCTGGATGGAGGGAACACGCACATGCCCACAGCTGCCATCATGAGCCTATGAGGTATTCAGCTATGACATAGGGTGCAGTGACCCTGTCACTAAATAACGCGTCGTGGTCATTCTTGACTTGCATTGCCATTTGGGCATGgtattttggaagaaattaactttatttttgtttgtttttatttaaatgtacagtatatgggtACACCTTACTATTCGAAATAAACTTTTATGGCAGCTTAATGACTTTAAATATCAAGGATGGTAATGACACATTAGAGGTAATTGAGTATTTTCTTAAATGGAGAGCGCAGATGCTCAAATGTACTTAACCCTAAAGGGATATGACTAATCTTTTAATCACAATGTAATTTCCCTTACAGTTTTTAATTGAGTAATACCAATGACAATTTTTATTTAGACACCAAGTCATCAATGGAATCCTCAAAATGATGACATGTTAAAAGGGTGTGATTAGCTAAGAGCTTTCTTTAATATAGACCCCTCCCCTGAAAAACAGTTTGCAGCTGGAGGGGATGCTCAAGGTCCTTGTATATTGTTTGTGTAATGAGTAATTTCAGAAACCCCTAACTAAAATCTGGCATAATTGTATCAGATGCCCGATTAGCTTCTGGGGGAAGATGTATGAGAAAagacactttaaacaatgcatTAAATATACAGTTTTGCAGTAGAAATGGATTTATCTATATTTTATCAATGATAAACAGTACAATATAAACAAAAACATGTATGATGTGTAACTATTTGTTATTTTAAAGTGTTTTTCATTGTTGTAAAGCCGGGGGATGCAAATGCCATTGCAATTCAAGAATGACCCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2105670 lncRNA downstream 28436 19083345 ~ 19083606 (-) True LOC110502401
TU2105659 lncRNA downstream 35943 19075699 ~ 19076099 (-) True G1838883
TU2105656 lncRNA downstream 37305 19074436 ~ 19074737 (-) True G1838880
TU2105647 lncRNA downstream 46137 19065617 ~ 19065905 (-) True G1838871
TU2105636 lncRNA downstream 53202 19058641 ~ 19058840 (-) True G1838860
TU2105815 lncRNA upstream 18144 19139487 ~ 19139688 (-) True G1839012
TU2105818 lncRNA upstream 23233 19144576 ~ 19144814 (-) True G1839015
TU2105821 lncRNA upstream 36062 19157405 ~ 19157964 (-) True G1839018
TU2105827 lncRNA upstream 43903 19165246 ~ 19165617 (-) True G1839021
TU2105887 lncRNA upstream 139908 19261251 ~ 19263423 (-) False LOC110502408
XM_021580392.2 mRNA downstream 19894 19083374 ~ 19092148 (-) False LOC110502401
XM_021580388.2 mRNA downstream 201235 18907082 ~ 18910807 (-) True LOC110502397
XM_021580386.2 mRNA downstream 251053 18854957 ~ 18860989 (-) False LOC110502395
XM_021580387.2 mRNA downstream 251053 18854957 ~ 18860989 (-) True LOC110502395
XM_021580385.2 mRNA downstream 257820 18849389 ~ 18854222 (-) False LOC110502394
XM_021580398.2 mRNA upstream 122952 19244295 ~ 19260880 (-) True LOC110502406
XM_036959721.1 mRNA upstream 139727 19261070 ~ 19385465 (-) False LOC110502408
XM_036959734.1 mRNA upstream 139727 19261070 ~ 19385465 (-) False LOC110502408
XM_036959725.1 mRNA upstream 139729 19261072 ~ 19385465 (-) False LOC110502408
XM_036959727.1 mRNA upstream 139729 19261072 ~ 19385465 (-) False LOC110502408
TU2105357 other downstream 257870 18849697 ~ 18854172 (-) True LOC110502394
TU2104675 other downstream 1381530 17725263 ~ 17730512 (-) False LOC110502361
TU2104686 other downstream 1392838 17709772 ~ 17719204 (-) True G1837980
TU2104595 other downstream 1686722 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other downstream 1687643 17423475 ~ 17424399 (-) True LOC110502353
TU2106048 other upstream 164053 19285396 ~ 19297744 (-) False LOC110502408
TU2106041 other upstream 257229 19378572 ~ 19385042 (-) True LOC110502408
TU2108760 other upstream 1821964 20943307 ~ 20943615 (-) True G1841694
TU2109040 other upstream 2224171 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 4061644 23182987 ~ 23233423 (-) True G1843946

Expression Profile