RNA id: XM_021580401.2


Basic Information

Item Value
RNA id XM_021580401.2
length 6389
RNA type mRNA
GC content 0.43
exon number 43
gene id LOC110502408
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 19261070 ~ 19385465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGCCCATGGTAACCACTTCAGCACAGAAgcgagtaagtgagtgagtgggtAGGGTTTCAGCTGTTCAGCGAGTGCTCTCTGGTGATCTCGCAGAGATAGTAGTCTAGAGCCTGTCGTCTAGGACACTGCAGGACCGCTTTGAAGAGCTCATCAAATGGCAAAGCTGAACCACACGGGAACTGAATAGAGCTCCCTTTCAAATAGGAAATTACTTGTTGATTTATCCAAATCTACAGAATGCCTCACATGACTTTGATATAGACACTCACCTGAAGATAGTAAGGTGGTTGGAGAAGAAGACAGTTAGTTGCAACTTGCCcgaggcaacccccccccccccccctccccccttgtcAAAAGTTAGGTCGTAAGGATTTCTATACCTTACGATTCGCTTTTCATCTTTCTCCCGATGAATATTGGAATTTCGTAGTGGATAAAAATCGAATAGACACTTACAACAAAAATGGAAGAAGATCAAAAGTGGGGAGTTGTTGATAAAAGAGTGCGGATGACTTGCAGTGACCACCGTTGCAAAAAGCACTTTTGGACGAATTGGAAAGATTTGTCCGGTATAACTGTCTGCATCGCATTATCTTTATTGTCTCTTGGATTTTGCGTTCTCGTTTACCTGAGTACATCGGAGCTGAAGTCCAGGATACTAAACCTGGAAAAACAGAGAGATACGCAGCTCTCCTCGTGGATCACACTCGAGCAGGTGGAACCCGTTGTTTTTGGACGAATAGATCAGATTCTGGAAGAGAAATTGGCGGCTCGACTTCCCAAAACACGAGAGACCAGAGAAGCGCCCCATAGCTGTGTCTGTCCACCAGGGCCTCCTGGGTCGAGGGGAAAGAGAGGTCACAATGGGGATCCAGgACCTCCTGGTCCGCCCGGACGATCAGGCTTTCCGGGTGACAAAGGAACAATGGGAATTCCTGGAAGAATGGGGATAAAAGGATACGCAGGGGAGAAGGGAGCGCCAGGGGAGCCAGGCCTGTCTATCATTGGGCCACGAGGACCTCCTGGACAGCCAGGAACAAGAGGCTTCCCAGGCTTTCCGGGTCCGATTGGGTTGGACGGAAAGCCCGGACAGAACGGCTTGAAAGGAGACTTGggtcaACGTGGTCTTAAAGGAGTCGCGGGTGAACCTGGTCTGAAAGGGGAAAAGggcaTATGTGGAGACTACACTCACAGGAAGCGGCGTATTGTACAGCCTTGTGTTGGAGGATTGACCACAGGCGAGCCTGGAGCTCAGGGCCCACCAGGACCTCCCGGCCCCCCAGGGCCCTCAGGGACCTCTGGACTGAATGGTGCTAGTGGACCGCCGGGTAAACCTGGTGAACCAGGAAAACCTGGGAAAGATCTAAGGCTCCTACCAGGGATGAAGGGTGAGCCAGGCATGGCAGGAATAAAGGGCGATGTTGGCCCCGCTGGTCCTGAAGGCCCCAAGGGACTGAAGGGAGAGCTTGGACTGAAGGGGGACTTTGGTATGCCGGGAATGCCAGGGAAACAAGGATTGAAGGGAGAGCCAGGTTTTCCAGGCACTCCTGGAAGAAAGGGTCAAGCTGGTATCCCTGGTACACCTGGTTTTCCTGGAAAGAGGGGCTACAGGGGTGACAAGGGCGAACCCAGCGCAGCAGGAACTGGCATCAAAGGAGAACCAGGGACACCAGGACTCCCAGGCCTATCAGGATCCAAGGGTGACAAAGGCGACCAAGGTCTCAAGGGGGAAGCAGGATCTGATGGCCCAGCTGGACCAAGAGGTCCTCCGGGTGCGGCAGGAGAGCCAGGGAAATCAGAAATCATCAACAATGAAAATGATATTCGGAATGTACCTTTGATGGGCCCACCTGGCCCTCCAGGGGCCCCCGGAACACCAGGAACAAAGGGTGAAGTTGGCCTTCCAGGCCCATCAGGTCTTGACGGAGAGAAGGGACCTCGGGGGAAGCCTGGAGAGCCAGGTCCTGTTGGCCCAGCGGGCCCTGAAGGTCCCATAGGGGAGAGGGGCCTGATGGGTTTCTCAGGACCCAAAGGAGACAAGGGGGACATGGGTCCCTTTGGATCACCTGGTTTAGACGGCCCTACTGGTGAAAAGGGGGTTTCTGGACCCCCTGGCCCCATTGGATTACCAGGCACAATGGGTCAGAAGGGCGAGTCCGGAGATAAGGGAGGAAGGTCAGACATGGTCTACGGACCCCCAGGGCCACCAGGTCCCCAAGGGCCAGTTGGCCCCGCGGGACCTGAAGGACTGGGAGGACCAAAGGGGGAGCAAGGCATAGGCATACGGGGAGAGAAGGGAGCATCTGGTTCGAAGGGCGATAAAGGGGACAGGGGCCATCTTGGACTTCCTGGAGCTCATGGTTTAGACGGCAGGCCTGGTCGAGTGGGTTTAATAGGACCAGTTGGTGTGGCAGGGCCTGCAGGACcaaagggggagagaGGTTTCATGGGAGATTCAGGAGTCCCAGGACCAATTGGTCCTCAAGGCATCCCTGGTTTTGTAGGACCACAAGGATTCAAAGGGAACCGGGGAGAGAGGGGCAAGAAAGGCAACAGGGGAACTAAAGGGGATAAGGGAGACCAAGGAGCACCCGGATTAGATGCCCCCTGTCCGTTGGGGGATGACGGCCTACCAGTATCAGGGTGTTGGAATAAAGGTCAAAATCCTTTCCAACTGGCCAAGTAGTAGAGGTTCAAGAGATCTGCTCAGTGACATTTCGCTCAAAGCTACAGAATGGCAACTTGAAGACATTTGGAGATATCTTTGATTTTTGACCCGACCTGTGGTTGCCATTTTACTCAAAGATTTTCCAGCCGACTGAAGACAGAGCCAGTAATGTTGGGGGGCTCCAGTGGCAGCAATGAGCAGACTGACTTCAATAAGACTCAGAAACAAAAAGGATTTCAGTTTCCTTTGCAGTTTTTTGTTGAAGGATTCTCAGGCTAGAAAAGCCGTCAAagccacagagagacacagatgcATTTCTTTGAGATGAATAGGCTTGATTTTCCATCGGTCTTTATTCACTATGTGAAAGTAAGACATGAACCTTGTATAGTGTACACTTCCCTGTGTTTTATTTGACACCAACAACTGTGATTCAAGAattcagagcagctcacagaacaTACTGAAATATTCTCTCCCTGTTCATGTGTTTCCAAGActaaccaaaaaaaaaacaaatggaaaCACTTTCGATGATTCCTGATATCAAACTCACTGCCTTCTCTACTATCCTGGGTGCTGCAGGCGTTTAACAAACTGTTTATGTAGCTATGTTGCCTGACCTGTGCCCAAGGAAGAACGATGGTATACATTATATACGTATACTAAAGAcatagtatattacatttattcACATTCTTGTACTGAGGTGTAATACTCATCATATCAATGCTGAAAGAGTaagtattatacagtaggagagggTTCACACACTGTATAAAGTGCTCACTCCatgttgttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattacattggTGTGACATGGGAGCCTCAAAAAAACGGCatcgatatatatatatttttagcagTCATACTGTCCGCTTTCAATGAGTATTCTAGAATAACTTGATTCATATTCCTGAGAAATGCCATACTAAATGCAAGACGTCATGCACCATTTCGGGCAGTTAATTTCAACTGGAATAATTTTAACACGTGCATCCTGTCTGTATGAATCAGTTGGGCTTCACGGTTACTGTTTGTTGCCCTTAAATATCGATTTGAACTATAAGAAAGCTTATTTCTATTGTAGGCTAATCTTTATGTAAGATTCTAACCTTGAACAGCTCCTCCAAACAATTTTCTTCTTGAATACTGATGGAAGAAAGAGCCCCTGATTTTTGTTGTCGTGGCTGGATGCACAAGACCAGTTTTGGAGTTATTGGACAGTTGACAACAGACGCTGAGATTATTTTGAATCGAATGAGTTGCTTATTGAGGTAGCCTATGACGTTTTCATCGGAGTTGATCGACAATTTAATGACGTTCTTGGGTGAAAACAACGTCTGAACTCTGAACTGCCGTTATGTCCATCTTGTCAACGACTGTGATATCTTGTGCCTTGTGTGCTTCCCTGTTTCCTAAAATAATCTAATGCACAGAAGCATTCCTTATGTCATATTGACAGCTGCCTTCTACCCTTTCGCACAACTCAATCCAAATGCGCGTAAAATAATTATTTGAATATTCAAAGTGGTGAATACAGAACCGTGCTTAGCTAGAGTCCATATTCATATCCAAATTGTGTATTGCGAACAAGGGGCAGTTATTGTGGTTGTTCTTTCGAGTTCATGAAAGCCACATCAAGTCTGACAACTAGGCTTACTCTGCACTTGTTGTTCATACTTTACACGCAGTTGATTCTGAAAGTATTTAAATTCACATGAACTGCTCCTATAAAACCTCTGTGGAACATGGTCCTTATAAGAGTGGATCAAGTCAAGTGCTGTTACTGTATTAAAGTAACTACTGTAAATGTCACTTAAAGTAAAGTGTTGTCACTGTATTAAAGTAACTACTGTAAATGTCACTTAAAGCAAAGTGTTGTCCACAATTGTTGTGTTTAACAATTGATGAATGTTTCCATTTATTTTGAATGCTCTAAACAAGAAGTTGTCCTCCCAAAGATTAAAATTCGTATTTATTTAGAGGTGCCCGTTTGTGCAATGATACATAATACATGTGTAATTTGGGCGAATTTGATGCTTTTCATTTGATTAATAGATGATTTAGTTCACCtcaaatatttttaacaagagAGTCCATCGTCCCCAATACAGCCCACAGTCCTTAATTAATTAACCAGAGTAATCCTATGAAGATTGAATATAAATATACTAAGAATCATTCATTATTTTGTAGCAATTCATTCAAAACAGCAGTCACCTTAGTGCATTGACTGTAGGGTCATCTTTGAAAGTTTGTGTGCATTTCATTTCAGCTTTTTCTCACGTATATTTTGCACAATGATGGCAGTACTCTTTAGTTTTACCAGATATTTTCTGGACATTATTATTACATGTATCATTTGTATTATGTTTCTTTTGTATACATTTCCCAATTGGTACAACTTTACTGTGTCTTGATCTTACATTGTGTTAAAATATTAAGTGTACTCGTCATGTAATATGCATATAACTATTTAACACATTATATATGAGAACAAGTGATTCATGAACAACACCCATTAACTGACGATAGGTCATGCGTAATCATTTCTGGAACTGAGCACAAAATTGGTCCTTCGTAAGTATTTTTGTTGCCTACTGCAAAAACTCAAATGAAGTCCTCGATTCATTATTCGTTTTTGTTAATGTCACTTTGCAATTCATTCACTCTCACTTTTTTACATGACGAGTACACGGATTTGTTTTAGGACTCGTGTTGTATCAACTGTAAAGTTATGTGGTTCATCACTGGTTGACATTACCGATATGTTTATGCCAGTCTATGCTCAATGCATTCTGTTTTGTATAAAGTGGATGTATCTCTTCTTGATGCCGTCACCATTCTGAGCTTTTAAATACATTTAGGAGATTCAGGTTTAGAAACCATTTTAGATAGTATTGTATAGCACTGCATAATAGTTAATCTGCTGTTGACATACATGTTGTTTTCTCTTAACTatctatactgtatgtgtgctagGCAGAAATGAAGATGTATAATATTTTGTGTGACAATCTATCAGTTTCAGTAGCTAACTGAGAACTGATTTGAGGGCATTTATTTCAATGCATTTGATGTAAAAACCATCTGCATGCTGATATTATTGTTTATAAGCACTATTTTACCATTTAATAGCAACAGCGAAATAACTACACACCATATATGGGCATATATTTGATATGCCAATTCTGCACAAGACGAGGAATTCTGTCAGTTAAGTGACCTTTTATAACTTCCTCTGGTGTTACAGACTCTTGAAAATGAATACAATTTGCAATGTTAACATTAAGTTGAGGTTTGGAAAGGTTGTTTCTTGAGATTCAATGTGAGTCATCCGTAAACCTTTGAATTAAATCAATCTAATCCAGAGTTCAGTATGTTTTAATGGCTTCGTTGAGTGTGAGGTAAAGGTGTTttaacagttgttgtttttttcagagAAGGTTTTTACTTTTTACAGATCTTACATTTCAGAGTACGTCACTGGTTGccaattgttatttcactgttcaATACATGTCACATTTTGAGAACATTGTCAATAATTCAAAAAATAAAGAATTGAGTTATCGTTTTTAAATTGTTGTTGCTGGAGGCCTGTTCAATTCAACTTTGTGGAAATAAggtataataataaataataatacgcCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2105827 lncRNA downstream 95457 19165246 ~ 19165617 (-) True G1839021
TU2105821 lncRNA downstream 103110 19157405 ~ 19157964 (-) True G1839018
TU2105818 lncRNA downstream 116260 19144576 ~ 19144814 (-) True G1839015
TU2105815 lncRNA downstream 121386 19139487 ~ 19139688 (-) True G1839012
TU2105670 lncRNA downstream 177468 19083345 ~ 19083606 (-) True LOC110502401
TU2106174 lncRNA upstream 71542 19457007 ~ 19457229 (-) True G1839340
TU2106177 lncRNA upstream 73592 19459057 ~ 19459456 (-) True G1839343
TU2106416 lncRNA upstream 111503 19496968 ~ 19497230 (-) True G1839567
TU2106386 lncRNA upstream 120439 19505904 ~ 19508282 (-) True LOC110502410
TU2106420 lncRNA upstream 133209 19518674 ~ 19518881 (-) True G1839571
XM_021580398.2 mRNA downstream 194 19244295 ~ 19260880 (-) True LOC110502406
XM_036960024.1 mRNA downstream 115742 19111958 ~ 19145332 (-) False si:dkey-51a16.9
XM_036960025.1 mRNA downstream 115742 19111958 ~ 19145332 (-) False si:dkey-51a16.9
XM_036960027.1 mRNA downstream 123700 19111958 ~ 19137374 (-) False si:dkey-51a16.9
XM_036960026.1 mRNA downstream 139627 19111958 ~ 19121447 (-) False si:dkey-51a16.9
XM_021580428.2 mRNA upstream 120365 19505830 ~ 19631049 (-) False LOC110502410
XM_036959754.1 mRNA upstream 120365 19505830 ~ 19631049 (-) False LOC110502410
XM_036959755.1 mRNA upstream 120365 19505830 ~ 19631049 (-) False LOC110502410
XM_036959756.1 mRNA upstream 120365 19505830 ~ 19631049 (-) False LOC110502410
XM_021580437.2 mRNA upstream 293523 19678988 ~ 19725375 (-) False hspa12a
TU2105797 other downstream 139731 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 406902 18849697 ~ 18854172 (-) True LOC110502394
TU2104675 other downstream 1530562 17725263 ~ 17730512 (-) False LOC110502361
TU2104686 other downstream 1541870 17709772 ~ 17719204 (-) True G1837980
TU2104596 other downstream 1836675 17423475 ~ 17424399 (-) True LOC110502353
TU2108760 other upstream 1557842 20943307 ~ 20943615 (-) True G1841694
TU2109040 other upstream 1960049 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 3797522 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 3830020 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 3959626 23345091 ~ 23345771 (-) True LOC110502462

Expression Profile