Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00051858 |
| length | 1705 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 9 |
| gene id | XLOC_026620 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 37059803 ~ 37082618 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000070 | mitotic sister chromatid segregation | biological_process |
| GO:0007017 | microtubule-based process | biological_process |
| GO:0007020 | microtubule nucleation | biological_process |
| GO:0007052 | mitotic spindle organization | biological_process |
| GO:0031122 | cytoplasmic microtubule organization | biological_process |
| GO:0000212 | meiotic spindle organization | biological_process |
| GO:0000226 | microtubule cytoskeleton organization | biological_process |
| GO:0000278 | mitotic cell cycle | biological_process |
| GO:0005813 | centrosome | cellular_component |
| GO:0005819 | spindle | cellular_component |
| GO:0000930 | gamma-tubulin complex | cellular_component |
| GO:0005874 | microtubule | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0005200 | structural constituent of cytoskeleton | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-836 | Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic sister chromatid segregation. Predicted to act upstream of or within cytoplasmic microtubule organization. Predicted to be located in cytoskeleton. Predicted to be part of gamma-tubulin complex. Predicted to be active in cytoplasm; microtubule cytoskeleton; and nucleus. Is expressed in blastomere; oocyte stage III; and oocyte stage V. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 4; inclusion body myositis; and muscular disease. Orthologous to several human genes including TUBG1 (tubulin gamma 1). |
| ensembl_id | ENSDART00000110716 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00053073 | lncRNA | downstream | 92679 | 36969403 ~ 36972222 (-) | True | XLOC_026619 |
| TCONS_00053072 | lncRNA | downstream | 110813 | 36953625 ~ 36954088 (-) | True | XLOC_026617 |
| TCONS_00052478 | lncRNA | downstream | 453877 | 36610334 ~ 36611024 (-) | True | XLOC_026609 |
| TCONS_00053071 | lncRNA | downstream | 477765 | 36583100 ~ 36587136 (-) | True | XLOC_026606 |
| TCONS_00051832 | lncRNA | downstream | 607593 | 36451635 ~ 36457308 (-) | True | XLOC_026604 |
| TCONS_00051861 | lncRNA | upstream | 53800 | 37136418 ~ 37143881 (-) | True | XLOC_026622 |
| TCONS_00053074 | lncRNA | upstream | 498904 | 37581522 ~ 37584807 (-) | True | XLOC_026625 |
| TCONS_00053075 | lncRNA | upstream | 551482 | 37634100 ~ 37649261 (-) | False | XLOC_026626 |
| TCONS_00051868 | lncRNA | upstream | 551482 | 37634100 ~ 37649389 (-) | False | XLOC_026626 |
| TCONS_00051869 | lncRNA | upstream | 552068 | 37634686 ~ 37639858 (-) | True | XLOC_026626 |
| TCONS_00051854 | mRNA | downstream | 120152 | 36904041 ~ 36944749 (-) | False | XLOC_026616 |
| TCONS_00051853 | mRNA | downstream | 132386 | 36904039 ~ 36932515 (-) | False | XLOC_026616 |
| TCONS_00051855 | mRNA | downstream | 132386 | 36920472 ~ 36932515 (-) | True | XLOC_026616 |
| TCONS_00051851 | mRNA | downstream | 218405 | 36836711 ~ 36846496 (-) | False | XLOC_026615 |
| TCONS_00051852 | mRNA | downstream | 225786 | 36836719 ~ 36839115 (-) | True | XLOC_026615 |
| TCONS_00051860 | mRNA | upstream | 52898 | 37135516 ~ 37148594 (-) | False | XLOC_026622 |
| TCONS_00051862 | mRNA | upstream | 153306 | 37235924 ~ 37476475 (-) | False | XLOC_026623 |
| TCONS_00051863 | mRNA | upstream | 157349 | 37239967 ~ 37351225 (-) | False | XLOC_026623 |
| TCONS_00051864 | mRNA | upstream | 157349 | 37239967 ~ 37476278 (-) | True | XLOC_026623 |
| TCONS_00051865 | mRNA | upstream | 475873 | 37558491 ~ 37571601 (-) | False | XLOC_026624 |
| TCONS_00051856 | other | downstream | 96908 | 36967871 ~ 36967993 (-) | True | XLOC_026618 |
| TCONS_00051846 | other | downstream | 308752 | 36756033 ~ 36756149 (-) | True | XLOC_026612 |
| TCONS_00051819 | other | downstream | 818106 | 36241668 ~ 36246795 (-) | True | XLOC_026597 |
| TCONS_00051818 | other | downstream | 818179 | 36240312 ~ 36246722 (-) | False | XLOC_026597 |
| TCONS_00051816 | other | downstream | 825860 | 36234207 ~ 36239041 (-) | False | XLOC_026597 |
| TCONS_00051873 | other | upstream | 591030 | 37673648 ~ 37699951 (-) | False | XLOC_026627 |
| TCONS_00051881 | other | upstream | 684667 | 37767285 ~ 37773800 (-) | False | XLOC_026629 |
| TCONS_00051892 | other | upstream | 1830760 | 38913378 ~ 38918717 (-) | False | XLOC_026635 |
| TCONS_00051900 | other | upstream | 2155478 | 39238096 ~ 39259677 (-) | False | XLOC_026643 |
| TCONS_00051909 | other | upstream | 2566827 | 39649445 ~ 39649562 (-) | True | XLOC_026651 |
