RNA id: XM_021580428.2


Basic Information

Item Value
RNA id XM_021580428.2
length 8319
RNA type mRNA
GC content 0.51
exon number 40
gene id LOC110502410
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 19505830 ~ 19631049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGCAGTGCAGCAAGTTTGGTTGTGAAGACCCAGCTTTTCCACGTAGTGTGTTTACTAAGTACAGCTTGTCGGCCTGTTTATGTGTTTAATTTGTGTATATTAGGAACCATATAGCTACCTTTTGAATTAATAGTTTTTGGTTTGAATGTGTCTCACGTACTGGAATGTCAAAATATAGTAGTTTTCCAATGTCTTGTAAATGATTATTGGTCATCACTGTTGGGCAGTTAGCTTATCAATTGAAATTGCACAGGACTCCATCTTGAAACTCCTAACAGGTTTCAGGATGGTGGACAAGAATATATACATTGTCCAAGGGGAGATCTGTACTGTTGTAGGTGCCATCAAGAGGAATTCAAGGTGGAATACCCATACTCCTTTGGATGAGGAACAAGATCCATTGCTTAACAGTTTCAGCCACCTGAAAGAGATTCTCAACAATATGAAAGAGCTGTCAGATGTGGAGCCCAACATATTCCTGCGGCCCTTCCTGGAGGTGGTACGATCTGAAGACACCACCGGACCAATCACAGGCCTGGCCCTCACCTCTGTCAACAAGTTCCTTTCCTACGGCCTCATAGATGCTAACCACGAGGCGGCGGCGGAGGCTATCGAGAACATGGCGGATGCCGTCACACACGCCAGATTCGTAGGGACGGACCCCGCCAGCGATGAAGTAGTGCTGATGAAAATCCTACAGGTCCTGAGGACTTTGCTGCTCACGCCCGTAGGAGCCCACCTGACCAACGAGTCTGTGTGTGAGATCATGCAGTCGTGTTTCCGCATCTGCTTCGAGATGCGCCTCAGCGAGCTCCTGAGGAAATCAGCCGAACACACACTGGTGGACATGGTGCAGCTGCTGTTTTCCAGACTACCCCAGTTTAAAGAGGAGGCCAAAAGTTTTGTGGGCGCCAACATGAAGAAGCTGAAGATGCGTGCTGGTGGGATGAGTGAGTCGTCAAAGTGGAAGAAGCAGAAGCGCTCGCCCCACCCCCCCCGCCACATGGTGCGAAGTGCCTCGGGCGGATTGGAGCAGGCCCCTACCACCACCCTCAGCAACAACAACCTCTCTGGTGGTGTCCCATTCATTGAGCAGGATAATTTGTCTGCCTCAGACAGCGTGGCCTCCTCCATGTCCATCCCCACAGACAGTGGCCTGGACACCTGCTCCAAGGCCACCTCCAGAGAggacctgacagacctggaccAGAGCAGCTCTGCCGCCACCACCCCTTCCACAGAGGCTGGACACCTGTACACTCAGTCTGAGGGTAGGCAGGTGGAGCATGCCCAGTCAGCCTCGGTGGAGTCCATCCCTGAGGTCCTGGAGGACGGAGAATCTGTGACGGAGCATTCGGACTCAGCCTCATTACATGACATGGACTATGTCAACCCCCGAGGAGTCCGCTTCACACCACAGCAAACACAGAGAGACGGTGAGGATGGTGCGGCTCTCATCCCCTACTCCCTGCCCTGTCTGCGGGAGCTCTTCCGCTTCCTCATCTCACTGACCAACCCCCATGACCGCCACAACACGGACGCCATGATGCACATGGGCCTGCAGTTGCTGACCGTGGCTCTGGAGGCGGCTCACATCGCCCCCTACCAGTCACTGCTGGGCCTGGTCAAAGACGAGCTCTGCAGACACCTCTTTCAGTTGCTAAGTGTGGACCGTATGAACCTGTATGCCGCCTCCATCCGAGCGTGCTTCTTGCTCTTTGAGAGCATGCGAGGACATTTGAAGTTTCAGCTCGAGATGTATTTGAAGAAGCTGATGAACATCATCACGTCAGAGAACATGAAGATGCCCTATGAGATGAAGGAGATGGCCCTGGAGGCCCTGGTGCAGCTTTCGAGGATCCCCAGCTTCGTCACCGAGCTCTACATCAATCATGACTGTGACTTCTACTGCTCAAACCTGTTTGAAGACCTCACCAAGCTGCTCTCCAAGAATGCCTTCCCTGTGTCCGGACAGCTCTACACAACCCACCTCCTCTCACTAGAGGCCCTACTCACTGTGATTGACAGCACTGAGGCCCACTGCCAGGCCAAGGTGCTCAACAGAACCACTCAGCAGGACCACTCGGCAGAAATGGTGTTGGCAGAAGGGGAGTGCTCAACCAACGACCGTACAGACACAACCACGGAAGCGAGCAGGCAGGTGAACAGTGCCAACGGTCAGAATGTTCCAGAGGCTGACAGTGTGCCCCTACCACCTACCAGCGGGCACCTGATGGCAGAGAAGATGAGACTGGGCAGACAAGACCAGGAGGAGACAGAACCAGctGAGAAGAAAGAACCAAAAAAGCCACATCGCTTCTCGTCTTGTTTACCTGATTCTCAAGAGCTGTTGGACATCAGAAATAAAAAGAAGCTGCTGAACAGCGGCACAGAGCAGTTCAACCAGAAGCCTAAGAAGGGCATCCAGTTTCTGCAGGAGAAGGGTCTCCTCAGCAGCCCCATGGACAACAACGAGGTGGCCCAGTGGCTCCGGGAGAACCCCCGCCTCGACAAGAAGCAGATCGGAGAGTTCATTAGTGACCGCAAATACATGGAGCTACTGGACAGCTTCGTCAACACGTTCACCTTCCGAGGGCTGCGTATTGACGAGGCGCTGCGTCTGTATCTGGAGGCCTTCAGACTGCCAGGAGAGGCTCCGGTCATCCATAGACTTTTGGAAACCTTCACAGACACCTGGCATAAAGTGAACGGCTCTCCCTTCATGACCAATGACGCAGGCTTCGCCCTGGCCTATGCTGTCATCATGCTCAACACGGACCAGCACAACAACAATGTGCGCAAGCAGAACATCCCCATGACCAttgagcaattCAAGAAGAATCTGAAGGGTGTGAATGGAAATACAGACTTTGATCAGGATATGCTGGAGGACATCTACAATGCAATCAAGAATGAAGAGATAGTGATGCCAGACGAGCAGTCTGGCCTGGTGAAGGAGAACTATGTATGGAACGTTCTGCTCCACCGGGGGGCCACCTCCGAGGGGGTCTTCCTCCATGTGCCTGCCGGCAGCTACGACCACGACCTGTTCACCATGACCTGGGGGCCCACCATCGCAGCCCTCTCCTACGTCTTCGACAAGAGCCTGGACGACACAATCATCCAGAAGGCCATTGCTGGCTTTAGGAAATGTGCTATGATATCAGCTCATTATGGATTCAGTGATGTTTTTGATAATTTGATCATCTCCCTCTGCAAGTTTACAACGCTCAGCAGTGAGTCGGTGGAGAACCTGCCCACAGTGTTTGGGAGTAACGGGAAGGCACAGATAGCGGCGAAAACGATGTTCCACCTGGCCCACCGGCATGGTGACATACTGAGGGAGGGCTGGAAAAACATCATGGACTCCATGCTGCAGCTGTTCAGAGCCGAGCTGCTGCCCAAGGCCATGGTGGAGGTGGAGGATTTTGTGGAGCCAAATGGAACGATCTCCCTTCAAAGAGAAGAGACACCGTCAAATCGGGGTGAGTCTGCGGTGCTGAGCTTTGTGAACTGGCTGACACTGAGTGGAGCGGAGCAGTCTGGTCAACGTGGGCCCTCTACTGAGAACCAGGAGGCCAAGCAGGCAGCCATGCTCTGTATCAAGCAATGTGACCCAGAGAAGCTGATCACAGAGAGTAAATTCCTGCAGCTGGAGTCTCTACAGGAGCTGATGAAGGCCCTGATCTCAGTCACACCTGATGAGGAGACATACGATGAGGAGGATGCTGCGTTCTGCCTGGAGATGCTGCTACGCATAGTCATGGAGAACAGggaccGTGTGTCGTGTGTATGGCAGACGGTGCGAGATCACCTGTGCCACCTGTGTGTCCAGGCTACAGAGAGCTGCTTCCTGGTGGAGAGGGCTGTGGTGGGCCTCATCAGACTGGCCATCCGCCTGCTGCGCAGAGAGGACATCAGCTCCCAGGTGCTGCTGTCCCTGCGTCTCCTGTTGATGATGAAACCACACGTCCTGGCCCGGGTTAGCCGGGAGGTGGCCTATGGCCTCCATGAGCTGCTTAAGACCAACGCTGCCAACATCCACTGCACAGACGACTGGTTCACCCTTTTCGCCCTAATTGAGTGCATCGGAGCCGGGATCAAACCCCCCGCCTCCTTCAAGGTCACCTCCACTACCCCAGACATCGACACAGGTGCCCAGTCGGACAGTGAGCTGTCGTTCCACCACCTCAGTGAGGTGAGTCTGGACCGGGGGTACACGTCAGACTCTGAGGTCTACACAGAGCATGGAAAGTCCAGGATGCCCCGCTCTGTCACTGACGTGGACGTGACTAGCAGCGGATGGCTGGTGGTTGGGAAAGACGACCTGGACATCAGCAAGGTAGCGGCTTCTGGGTCCAAGACCCTGCTAAACCCTCTAGTGAACCAGTACAGCCTGTCCCTGGGTCAAGACATGGGTTTCCACGACACCAAGTCTCTCATCAAGTGTGTGGAGTCCCTCTCCTTCATAGTACGAGACGCTGCACATGTCACCCCTGAGAACTTTGAGCTGTGTGTCAAGGCCATCCGGGTGTTTGTGGAGGCCAGCCTAAACGGAGGCTACAGGACCtatgagaagaagaagaaccaCAAGTACGACTCCCAGAAGTCCCGTGTGAGAAGGAAGCCCCGGGACAAGGAAGGTGCGTCACGCCGCGCCAAGGCCTCCAGCCAGAGGCCTTCCCGTTCCCATAGCGATGACGAGGAAGACGAGGGAGTCCCTGCCAGCTACCACACGGTGTCATTACAGGTTAGTCAGGACCTGTTAGATCTGATGCACACGCTGCATACGAGGGCCTCCAGCATCTACAGCTCCTGGGCAGAGGAGCAGCGCCGCCTGGAGCCAGTAGGGAAGAAGATTGAGGCCGACTCCCAGACACTGTGGACCAGCTGCTGGTGCCCACTGCTCCAAGGGATAGCCTGGCTGTGCTGCGACGCCAGGAGGCTGGTGCGAATGCAGGCCCTGACCTACCTCCAGAGGGCACTGTTGGTCCATGACCTGCAGACACTAGATGCTGTGGAGTGGGAGTCCTGCTTTAACAAGGTGCTGTTCCCCCTGCTGACCAAGCTTCTGGACAATATTAGCCCTGCAGACGTGTGTGGCATGGAGGAGACCAGGATGAGGGCTTGCACCCTGCTGTCAAAGGTGTTCCTGCAGCACCTCTCTCCCTTGTTGTCTCTGTCCACCTTCGCTGCCCTGTGGCTCACCATCCTGGACTTCATGGACAAGTACATGCACGCTGGCTCCAGTGACCTGCTGCTGGAGGCCATCCCAGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCAGGAATCTTCCACAGCGCTGACTCTCGTACGGGATACTCTGACCTGTGGGAGATCACTTGGGAACGCATCGACTGCTTCCTGCCTAACCTCCGGGAGGAGCTCTTCAAACAGACCGTCATACCACAACCAGATCCTGCTCCTAGTCCCCCAGTGGAGCTTGTCCAGCCGGCTGCCCCCTGCCCCCCAGCCTCGCCACCCCCAGCTCAGGCCCTATCTCCTGTGCCAGTGCCAGCTTCCCCCACAGAGCCAAAGACCTCCAGCAGACCAGTGTCGCCCCAAGATCCCCCACCACCTAGTACCAACGgAACAGACAGATCATCTCCAGTGCCTCCATCGACTCCCCCCATGCCCACCCCAGTGAAGATGTCCCCCCAGATCTCTAGCTCACTGATCCAGTCCCCCACGAGTCAGTCCCCCCTCATCCTGCAGCCCCTGGCCTCCCATCTGCAGGTGGGGGGCGTGCCCCCTATGTCCCTCCCCATTATCCTCAACCCCGCCCTCATTGAGGCCAGTTGCCCTGTCCCGCTgctccccaccccccaccccactgaACATAGTGACACCCCGCAGGTCAAATAGAGCCACCCATAGCCCTATGCCTACTCTCACGGGGGGCACTCCATCCCCAACCTGTCCCCTAAACATCATAGCTTTCTCCTTAGGCTCTGCCCCCCttcacacagggggacaaaccgTCTGTGACACAGAGACCCTTTACATCCATGGTCACCTCTCAGACGACACTAAACAACAGACACACCTAGCTTTGAAGTCTTATCTAACATCCTGGGGCCTGCTGTCCCTCAATATTCACTTGTTCGTCAGACATTTTTTGGAACTCCGTCGGGGTCTCAACTTTACTTTTGAGAGTTAGATTAGTAGAAGACACAAGGTGCAAGGTCGAAATGTGTTTGTGCATcggcagtttttctcttgttttgtCAGTCGCTAACAGTCACTAAATTAGCCATGTCGgctaacaatttttagattggtaaattagtctagccagttatctaaacttgtagtaatcatggccaaatACTGACAGGGCACTTGCCCGGGGCCCTGACTTCTAGGGGGCCCCCCATttttttgattttgttagtcactctcactcagatattaaCATGgcgaaatgtgtagaattgcaggaaattggctttaaaacagcaaagtcagtagaattgcatgaaatgtgttataaaattgcaaaatgtatagaactgcagtaaacttgctttaaaactgctaacatttttctctacgccccatggcaaaatgtgttccAGGAAATGACTTTAAAAGATATTTCTCTCCACCTTCAAGAGGGGAGGGACAAAAAAAAATGGCCGGCTTGGTGGGGGGCCTCCCCAACCAAATCTCACTTaaggcccccaaaaggctaaagTTTTTCCTGAGTATGCCTGTGCTTAACATTTAATCTAGAGGTTCTGCCAGGAACAAAATCATAGTGAATAACTTATTTGGGTTTTAGGTACTGCATGTTGTTTACTGAATAGGATGTGAACAGATTCATTTACTCCAGTCAAAGTGTTCAGGGCACTGTCTTAAAACAAAAACAGACCTGTATCATAACTATTTTATTGGAGGGTCGAAATATAAGTGTACAGTAATATAAAGCATACATAGTTTCTATATTTCCAGTATAAAATGGTCAGAGGTTAGAAATTAGCCTACAAGTTTTCACAATCTTGTTTGCAAATTTTTATTACAATGGCCCTAAAACGACACTTTAAATGCTGTTATACCCAAGAGGGACAAAGGTGtgcatggtttggcttggaaagatGGATTTGAGATGCTGCCATTGCTAACAAGTGCAGCACCTAGAACATTCCGAATGTGACAACTGGTCTGGCCTGGGTGTGTGTGGTTGGTTCGCTGTGTTCTGTGATGGTGGAACTCTGTCCGTGTCAGCTTTTGTCAAACAGGTTAGGAGAGTTTAATAGTAAGGTCTTAATGAGATTATTTAATGGAGTACAATATTGCCTTTTGTCATTTGAATCCGGGTGTGTTTGTCACGTTTGTGTAATAAATgttgaaatgtgttattttacagaGTCCACCATAGTAGTACggtgcccctggagcaaattagggttaagtgccttgctcgagGGCATATTGACAGATTTCtctccttgtcagctcgggtattcgaaccagcgacccttcggttactggtccaacacgaTGCATACAGCAATTGTGGCCACTTAAGACTTGAGCAGATTGAGCATAGACCGCAATCAGTAAATCTGGGACAAGCAGATCTTAAATTCAGTCTTCATTTTCAAGAGATGAGATGATTGGCCCAGATCATCTGCGCAAGTTTCATGCGGGACTATGATTACCCCACTTGACTCAGTGAAAGTATATTTGCATTTCACCGTCTGTACAGTAAGCTATGGATTGCAGAGGAGTTGGAACATTGGCATGTTGAAGTTAGAGCCTTGATCAAAGGATACTCGTACCAGACTTCTCACTGCATGTGATGACGGAAGAACAAACAATGGCTTTCAAAAGCCTCAACCACTTAGAACACGTCAGGTGTCTATTTTGAAAACCCAACCTTGTGATCGGAGTAAACTTCAGTGCAGCTTATTTCTTGGCCGTTACCCCTCTTGTCTATAGTATTTATTCAGCTATGAATGAGGTGTTGGGGAATTAATACTCTCGTCGAAACACAGTTGGGAGCAACTACTTCCATGTCAGGTTACATTACTCTCTGAATCTTCTGCCTTATGTCAGAAATCGCATTAGTCTGTGCACAATGAAGTGGAGCCCCTCTGTCAGGGGTGTCGTTATGTTAATTTGTTGTACTGCATTGTTAGGTATACCAGGAGCTAATTCTTGAGtgaacaagaaattacatgaatataatgtatatatGAAGAAAAGGTCATGTACTTTTTACAATGTAATAAATGTAATGAAACGATGCATTAATCAAATCACAGCTGGATCTGTGGTGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2106416 lncRNA downstream 8600 19496968 ~ 19497230 (-) True G1839567
TU2106177 lncRNA downstream 46374 19459057 ~ 19459456 (-) True G1839343
TU2106174 lncRNA downstream 48601 19457007 ~ 19457229 (-) True G1839340
TU2106045 lncRNA downstream 223202 19266445 ~ 19282628 (-) False LOC110502408
TU2105887 lncRNA downstream 242407 19261251 ~ 19263423 (-) False LOC110502408
TU2106490 lncRNA upstream 30308 19661357 ~ 19661565 (-) True G1839641
TU2106497 lncRNA upstream 37104 19668153 ~ 19668355 (-) True G1839648
TU2106505 lncRNA upstream 57375 19688424 ~ 19689668 (-) True G1839656
TU2106774 lncRNA upstream 113849 19744898 ~ 19745127 (-) True G1839891
TU2106775 lncRNA upstream 114392 19745441 ~ 19745677 (-) True G1839892
XM_036959721.1 mRNA downstream 120365 19261070 ~ 19385465 (-) False LOC110502408
XM_036959734.1 mRNA downstream 120365 19261070 ~ 19385465 (-) False LOC110502408
XM_036959725.1 mRNA downstream 120365 19261072 ~ 19385465 (-) False LOC110502408
XM_036959727.1 mRNA downstream 120365 19261072 ~ 19385465 (-) False LOC110502408
XM_021580427.2 mRNA downstream 120365 19261073 ~ 19385465 (-) False LOC110502408
XM_021580437.2 mRNA upstream 47939 19678988 ~ 19725375 (-) False hspa12a
XM_021580438.2 mRNA upstream 47939 19678988 ~ 19725376 (-) False hspa12a
XM_021580439.2 mRNA upstream 51426 19682475 ~ 19725367 (-) True hspa12a
XR_005039163.1 mRNA upstream 247972 19879021 ~ 19881151 (-) True LOC110503056
NM_001124597.1 mRNA upstream 260664 19891713 ~ 19927867 (-) True LOC100136607
TU2106041 other downstream 120788 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 208086 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 384487 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 651658 18849697 ~ 18854172 (-) True LOC110502394
TU2104675 other downstream 1775318 17725263 ~ 17730512 (-) False LOC110502361
TU2108760 other upstream 1312258 20943307 ~ 20943615 (-) True G1841694
TU2109040 other upstream 1714465 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 3551938 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 3584436 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 3714042 23345091 ~ 23345771 (-) True LOC110502462

Expression Profile