RNA id: TCONS_00051861


Basic Information

Item Value
RNA id TCONS_00051861
length 919
lncRNA type retained_intron
GC content 0.41
exon number 3
gene id XLOC_026622
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 37135516 ~ 37148594 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCAAAAGAGTGAGAACCTTCAATACCTATTTATATGCTGTTGTCATCTTGTGTGGAATGAAAAGGCTCAGCaactttatatgtgtgtgtgtgtgtctgtgtgtgtagcaATCGACTACATTCAGTTTCTCCACAAAGAAAAGAAGAAGCAGGAAGAGGATGTTTCCACACTTAGGAAGGAGGTGATGGCGCTGAAAATTATGAAAACGAACTATGAGCACATTGTGAAGGCCCATCAGAATAACCCTCAGCAGGGCAGCGAGCAGGTTTCAGATCAGGTGAAGTTCAGTGTTTTTCAGAGCATCATGGACTCTCTGTTCCAGTCCTTCAGTGCCTCAGTGTCGGTCAGCAGTTTTCAGGAGCTTTCCGCCTGTGTCTTCAGCTGGATAGAGGAACACTGCAAGCCACAGACGCTGAGGGAGTTTGTGGTGACTGTACTGCAGCAGGTGAATGGTCAACTGTACTGAAGCGGTCAATATGTCTGCCCCTCAGGCTATTATCTTATTCAAGAAAATAAAGacacttaaatacacacacacacacacacaaaatacagcaGGGCTCAGCACACTACTGGACTAGAGTGCATTGAAGAACTCTGATGAAATGAAGCAGTGTCAAGTATTGACTGATGTTGTGTAGCATTTATGGCAGTGATTCCAATCAAAAAGTGTGCAAATGCAATAATTTAGCCATATCTGTCAATTTATAACTAGTGATTTAAAAGGTACTAAGAGGGAAAAACATGTTTGAGATTGAATATTCTGTTTCCTCGTACACTTTTAGCTTATGTGTTTTGTTtagtcagtgttttcaaaaaacaCCTCAGTCCTTAAGAGTAATCATATCAGTTCAGTTTTCCCCTCAGTATTTGCATGTTCACAGATAAAACAGCATCCTGACAACCCCAAATAAGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko04932 Non-alcoholic fatty liver disease
ko04931 Insulin resistance
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-050522-316 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human MLX (MAX dimerization protein MLX).

Ensembl:

ensembl_id ENSDART00000129059

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053073 lncRNA downstream 164196 36969403 ~ 36972222 (-) True XLOC_026619
TCONS_00053072 lncRNA downstream 182330 36953625 ~ 36954088 (-) True XLOC_026617
TCONS_00052478 lncRNA downstream 525394 36610334 ~ 36611024 (-) True XLOC_026609
TCONS_00053071 lncRNA downstream 549282 36583100 ~ 36587136 (-) True XLOC_026606
TCONS_00051832 lncRNA downstream 679110 36451635 ~ 36457308 (-) True XLOC_026604
TCONS_00053074 lncRNA upstream 437641 37581522 ~ 37584807 (-) True XLOC_026625
TCONS_00053075 lncRNA upstream 490219 37634100 ~ 37649261 (-) False XLOC_026626
TCONS_00051868 lncRNA upstream 490219 37634100 ~ 37649389 (-) False XLOC_026626
TCONS_00051869 lncRNA upstream 490805 37634686 ~ 37639858 (-) True XLOC_026626
TCONS_00051872 lncRNA upstream 525282 37669163 ~ 37670175 (-) False XLOC_026627
TCONS_00051857 mRNA downstream 53800 37059803 ~ 37082618 (-) False XLOC_026620
TCONS_00051858 mRNA downstream 53800 37064901 ~ 37082618 (-) True XLOC_026620
TCONS_00051854 mRNA downstream 191669 36904041 ~ 36944749 (-) False XLOC_026616
TCONS_00051853 mRNA downstream 203903 36904039 ~ 36932515 (-) False XLOC_026616
TCONS_00051855 mRNA downstream 203903 36920472 ~ 36932515 (-) True XLOC_026616
TCONS_00051862 mRNA upstream 92043 37235924 ~ 37476475 (-) False XLOC_026623
TCONS_00051863 mRNA upstream 96086 37239967 ~ 37351225 (-) False XLOC_026623
TCONS_00051864 mRNA upstream 96086 37239967 ~ 37476278 (-) True XLOC_026623
TCONS_00051865 mRNA upstream 414610 37558491 ~ 37571601 (-) False XLOC_026624
TCONS_00051866 mRNA upstream 416459 37560340 ~ 37585863 (-) False XLOC_026624
TCONS_00051859 other downstream 60605 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051856 other downstream 168425 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051846 other downstream 380269 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051819 other downstream 889623 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051818 other downstream 889696 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051873 other upstream 529767 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051881 other upstream 623404 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051892 other upstream 1769497 38913378 ~ 38918717 (-) False XLOC_026635
TCONS_00051900 other upstream 2094215 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051909 other upstream 2505564 39649445 ~ 39649562 (-) True XLOC_026651

Expression Profile

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