RNA id: XM_021580439.2


Basic Information

Item Value
RNA id XM_021580439.2
length 2097
RNA type mRNA
GC content 0.57
exon number 12
gene id hspa12a
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 19678988 ~ 19725376 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCCCTTACTGTAGACTTTtaggtctggatttggagacaTTCCTTGCCAGAACAGCCGTGCGAGCTGACGGGAGGGGCGGGACAGAGGGCTACCTAACAATCGGAAAGTAGCAGCCTGAGatGCAATGGCAACTCCCTCTCCAGCAAAGAGCATGGGTGACCCTGGCATCACCCCACTGTCACCCTCCCACATTCAGCAAAATGACACGGACTCGAATGCCCACACGGGACCTTCGTTCATCGTGGTGGTTGCTATCGACTTTGGCACCACTTCCAGCGGCTATGCTTACGCCTTCACTAAGGAGCCAGAATGCATTCACACCATGAGACGCTGGGAGGGCGGCGACCCCGGAGTGTCCAATCAGAAGACGCCTACCACCATCCTCCTGACCCCGGACAGGAAGTTCCATAGTTTTGGCTATGCAGCACGTGACTTCTACCACGACCTGGACCCTACCGAGTCCAAGCACTGGCTCTACCTGGAGAAGTTCAAAATGAAACTCCATACAACAGCGAATCTCTCCATCGACACAGAACTCCATGCAGCCAATGGGAAGAGAGTAAAAGCTATTGATATTTTTGCATATGCTCTGGCGTTCTTCAAGGAGCAAGCACTAAAGGAATTGAGTGACCAGGCGGGTGCAGAGTTTGACAATGCAGACATCAGATGGGTCATCACAGTGCCAGCCATCTGGAAAATGCCAGCCAAGCAGTTCATGAGGGAGGCAGCCTACAAGGCTGGTCTGGTTCCCCGTGACAACCCAGAGCAGCTGATCATTGCCCTTGAGCCCGAGGCAGCCTCCATCTACTGCCGCAAGCTCCGCCTCCACCAGATGATTGACATTGGCACCAAGACCAACCAGAACGGTTTCAGCCCCACTGAGAATGTAGGGGCAGGGATGATCCAGGCCAAGGAGCATGTCCGGAGCAAACGGCAGAGCCGCACCTTTTTGGTGGAAAATGTCATAGGGGAGCTTTGGTCGGAGCTGGAAGAAGGTGACCGCTAtgtagtggttgactgtggtggCGGAACGGTTGACCTCACGGTCCATCAGATTCGGCTCCCTGAGGGACATCTCAAGGAGCTCTATAAGGCCTCAGGCGGTCCTTATGGCTCCATTGGTATTGACTATGAGTTTGAGAAACTCCTGTGTAAGATCTTCGGGCCCGACTTCATCGACCAGTTTAAGGTCAAGCGGCCGGCTGCCTGGGTGGATCTGATGATCGCGTTTGAGTCCCGGAAACGGGCAGCGGCCCCGGACAGGACCAACCCCCTGAATATCAACCTGCCCTTCTCCTTCATCGACTACTACAAGAAGTTCAGAGGTCACAGTGTGGAGCACGCCCTGCGCAAGagcaatGTGGACTTTGTGAAGTGGTCCTCCCAGGGCATGCTGAGAATGAACCCTGATGCCATGAACGCCCTCTTCAAGCCCACCATAGATCACATCATTCAGCACCTCACTGATCTCTTTGAGAAGCCGGAGGTGTCTGATATCAAGTTCCTGTTCCTAGTGGGCGGCTTCGCTGAGTCACCCCTGCTGCAGCAGGCGGTGCAGAACATGCTGCAAGGACGCAGCCGCATCATCATCCCCCACGATGTGGGCCTCACCATCCTCAAGGGGGCCGTTCTCTTCGGCCTGGACCCCAGCATAATCAAGGTGCGCCGCTCGCCCCTCACCTACGGCGTGGGCGTCCTCAACCGCTACGTGGAGGGCAAGCATCCGCCCGACAAGATGCTGGTGAAGGACGGCACGCGCTGGTGCACCGACGTCTTCGACACCTTCATCACCTGCGATCAGTCCGTAGCCCTGGGTGAGACGGTGAAGCGCAGCTACACGCCCGCCAAGCCCAGCCAGCAGGTCATCGTTATCCACATCTACTGCTCGGAGAAGGAAGGCGTGGGCTTCATCAGCGAGCTGGGTGTGAGGAAGTGCGGCACGCTGCGGCTGGATGTGACCGGTACGGAGAGCACCGTCGTGCGCCGTGAGATCCAGACGCTCATGCAGTTTGGGGACACGGAGATCCGGGCCATGGCGGTGGATGTAGCCACTTCGCGTACCGTCAAGGCTAGCATCGACTTCCTCAGTCAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2106497 lncRNA downstream 14120 19668153 ~ 19668355 (-) True G1839648
TU2106490 lncRNA downstream 20910 19661357 ~ 19661565 (-) True G1839641
TU2106420 lncRNA downstream 163594 19518674 ~ 19518881 (-) True G1839571
TU2106386 lncRNA downstream 174193 19505904 ~ 19508282 (-) True LOC110502410
TU2106416 lncRNA downstream 185245 19496968 ~ 19497230 (-) True G1839567
TU2106774 lncRNA upstream 19531 19744898 ~ 19745127 (-) True G1839891
TU2106775 lncRNA upstream 20074 19745441 ~ 19745677 (-) True G1839892
TU2106805 lncRNA upstream 50860 19776227 ~ 19814265 (-) True G1839917
TU2106807 lncRNA upstream 53549 19778916 ~ 19782035 (-) True G1839919
TU2106856 lncRNA upstream 119560 19844927 ~ 19845344 (-) True G1839962
XM_021580428.2 mRNA downstream 51426 19505830 ~ 19631049 (-) False LOC110502410
XM_036959754.1 mRNA downstream 51426 19505830 ~ 19631049 (-) False LOC110502410
XM_036959755.1 mRNA downstream 51426 19505830 ~ 19631049 (-) False LOC110502410
XM_036959756.1 mRNA downstream 51426 19505830 ~ 19631049 (-) False LOC110502410
XM_036959726.1 mRNA downstream 297010 19266437 ~ 19385465 (-) False LOC110502408
XR_005039163.1 mRNA upstream 153654 19879021 ~ 19881151 (-) True LOC110503056
NM_001124597.1 mRNA upstream 166346 19891713 ~ 19927867 (-) True LOC100136607
XM_021580442.2 mRNA upstream 218668 19944035 ~ 19955946 (-) True LOC110502416
XM_021580447.2 mRNA upstream 343830 20069197 ~ 20136003 (-) False LOC110502421
XM_021580448.2 mRNA upstream 431036 20156403 ~ 20169212 (-) True LOC110502422
TU2106041 other downstream 297433 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 384731 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 561132 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 828303 18849697 ~ 18854172 (-) True LOC110502394
TU2104675 other downstream 1951963 17725263 ~ 17730512 (-) False LOC110502361
TU2108760 other upstream 1217940 20943307 ~ 20943615 (-) True G1841694
TU2109040 other upstream 1620147 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 3457620 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 3490118 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 3619724 23345091 ~ 23345771 (-) True LOC110502462

Expression Profile