RNA id: TCONS_00051862


Basic Information

Item Value
RNA id TCONS_00051862
length 7693
RNA type mRNA
GC content 0.48
exon number 18
gene id XLOC_026623
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 37235924 ~ 37476475 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGGATAAACGCGAGAGAGCCAGACAAAGAAAGGCAGGGACGGACGGAGAAAAGGAGCGAATAGAAGCGCGACCGGCTACGGGAGAGGCGAATTACGCGGAGTGAAGACGAGAGAGGAAGGAGGAGGACCGGGAGGGTGGATCAGGAAGCAGGCTGTGGCTCTCTCTTGTAGGCAGCGGAGCGCGGTGAAGGCATTATGGGAAATGCACCATCCCAAGCAGACCCGGAGCGTGGCGGAGGTCACATGATCTCCACAGATGACCTGGAGTACCCGCGCGAGTATCGCACGCTGGGCAACAACACTCGGAGGTTCTCTAACGTGGGTCTGGTCCACACCTCCGAGCACCGGCACACGGTCATCGCCGCCCAGAGTCTGGAGACCCTCACCAACCTGCACAAGGCTGACATGGAGCGCAAACGGGATGTCTTCATGGACCACCTGAAGAACAAGTACCCGCCCCAGCACTCACTGCCACCCTCACCATCACCCTCACACGGCAGCATGAGGGGCAGCGCTGAGAGGAGTGCACGAGAACAGCAACAGCCAAACTACTGGAGCTTTAAGAGCCGTAGTCCACGTCACTCTCAGTCCACTCAGTCAGGTTTGGCAGACCAAGCGTCTAAACTGTCCTTCGCCTCTGCTGAGTCTCTGGAGACCATGTCTGAAGCCGACATGCCGCTGGGTTTTAACCGCATGAACCGTTTCCGCCAGAGCCTCCCGCTCTCCCGCTCCGCAAGTCAGAATAAACTGCGCTCTCCAGGTGTGCTGTTCCTCCAGTTTGGAGATGAGACCCGGCGTGTTCACATCACCCATGAGCTTAACAGTCTGGAGACGCTGCACGCACTCATCGTGCACATGTTCCCTCAAAAACTGACTGCAGGAATGCTCAAGTCGCCTAACACAGCCATCCTGATCAAAGATGAAGCCAGAAATGTCTTCTACGAGCTGGAGGATGTGAGGGACATACAGGACCGCAGCATCATCAAAATCTATCGCAAAGAACCCATCTACGCCTCCTATCCTGCAGCGCATCTGGCCAACGGAGATCTCAGGAGAGAGATGGTTTACACGTCCCGTGACTCCTCACCTACTCGCCGCCTCAACACTCTCCCTTCCTCCAGCACTTCACACTCCTCCGGCTCCCCTTCCCGATCCCGTCTCTCCTACAGTGGAGGTCGCCCACCTTCGTTCGCCGGTCCGGGACACCCTCATCCCCAGGGCCCCCAGCATTCACAACACTCCCACCACCCATCACCCTCACACGGACAGGGTCAAGGCCTCACCCCATCCTCCTCCGCCATCCTGGAGCGGCGCGATGTCAAACCAGACGAGGAGATGTCTGGGAAAAACATGGTCCTTCTGAAGAACGAAGGTCTCTACGCTGACCCCTACAGTTTGATGCACGAGGGACGACTTAGTATAGCTTCCACTCAATCGCTGGCCACCATTGCTGACCCGTTCGGCTTCCCGGTTTCAGGAGGCCTATACCGCCGAGGTTCGGTTCGGTCGCTTAGCACATACTCAGCCGCAGCTCTACAAAACGACCTGGAGGACAGTCTGTATAAACCTGGAGGATCTCTGTACTCTGATGCCTACAGCAGCTCCACTTTAGGAATGGGTTTTCGGCTGCCACCTTCATCCCCGCAGAAGATACCAGACGTGCAGCTGCGCGACAGAGATTCGTTCACTGGATCTCCAAGCCGAGGGTCGCCAGTGAGGACCACCTTCAGAAAGGACTCGGCTTCGTCTTCTGTGTTTGTGGAGAGTCCTAAGTCTAGACCCAGCTCTAGTTCGGAACCGCTGGGAGATGGAAGTAAAGGAGCTGGATTCGGATCACCGCTCTCTGGAGGAGAGATCGACTCACGGGATCGTATGGAGGCAATGGAGAAGCAGATAGCCAGTCTGACTGGACTGGTCCAGAGTGTCCTGACTCGAGCTCCAGACAGTGACAGCACCGAGAAGACCGAATCCACCAGCGAAGGATCCGCCACGGGAACTGGCCGGCTGAAGAAGAAAGCGCTGACTCCATCAGCCCCACTGGCGCTGATGCCTCCGCCTTCATCTGGAGGCTCTCAGGCCTCCACCGTTTCCAGACTACAGATGCAGCTTCACCTGCACGACCTCCAACAGAATGCCACTGATCTGCGCAAACAGCTTGCACAGCTGCGGAAAATGCAGttGCAGAACCAGGACTCCATACGGAGTTTACTGAAGAGAACCGAGACTGAGCTGAGTCTGCGTCTGTCTGATGCACTGAGGAAACAGGAAGACCCTCTCCAGAGACAGCGCCTTCTAGTGGAAGAGGAGAGACTCAAGTACCTGAACGAGGAGGAACTCATCATACAGCAGCTGCATGATCTGGAAAAGTCAGTGGAGGAAATTCAGAAGGAGATTTCAGTCAATCACAGACATGTGACCGTGCAGGAGCTGGAGGAGAAGAGCTCAATGCTAAGGAAACTGGGAGAGACTCTGACGGAGCTAAAGAATCAGTTCCCTGGGCTCCAGAGTAAAATGCGGGTGGTGTTACGAGTGGAAGTGGAAGCGGTGAAATTCCTGAAAGAGGAGCCTCACAGGCTGGACGCCTTGTTGAAACGCTGCAAATCCATCACTGACACTCTCACCACACTAAGAAGGCAGGTGAATGAGGGAGTGTGGAAAAGCCAGGATGAGTTTTCCAGCCCCTCTGCTAAACTTGGAGGAGGGGACGAGTACAGAAAGAACACAGACTTTGACATTCCAACCAGCCCACCGCTGAGCCTCAATGAGAGCAGCTTGGCTAACTGGAGCCCTCACCCAGGGCAAGGTCATGGCCACTCTAACTCGTCCCATGCACAGCGAGAGAAGGACTCTCATGGGGTCATGGTGGGCTCACTGAAGACCCGGGGTCTGGAGGAGCTCGGAGGAAGAGGAGGGTCTGAGAAAGCCTCATCTGTGGAAGTCAGACTGGCAGCGGAGCGTGATTGGGAAGAGAAGAGGGCCAGTCTGACACAGTACAGCGCTCAGGACATCAATCGACTGTTGGAGGAGACTCAGGCAGAGCTCATGAAGGCCATTCCTGACTTGGACTTTGCCGCCAAGCAGATCAAACCTGCTCAGAACCAGAATCAGAACCAGAACCAGAACCCAAACCAAAACCAGAATCCAAGTCCATCCAGCACCAATGCCACACCTGAACACAGGCCTAACAAACCTCAGCATAAACTCAACAGTAAAGATAGCGGATCTAGACGAGGCTCAGATGAACTGACGGTGGCAAGATATCGAACAGAGAAGCCTTCAAAATCACCTCCTCCTCCACCGCCCCGCCGTAGCTTCCCCTCCTCGCCGGGGCTGACTACACGTAGCGGAGAGATAATCATCCCTGGAAAGAGTATAAAGAAATCTGAATCAGAGGAGGCCGAGTCCCAGAAGCCGCACGTGAAGCTGCGCAGAAGTATATCTGAAGCCCCTCGACCAGCCTCCACCCCTCCAACCATCGCTGGCGGAGAACGAGAGGAAGCTGATGATGAAAAACTAGCAGCCGAGCTGGAGACTAGTGGTGGGAAGGCGTTGTCCCGTCTCAAGCATCTGCAGCAGAGCGGATCAGAAAAAATCAAAACTAGCAAGCAGAGAGAGGACTTCCTGAAGAATCATGGACAACAGCAGTAAGCAGAAGCGGGTGACCCAGTCCAACCTGACCTAACCAAGGCTTGTCCACCTCCTCCTTCGCTGTCTTCACCACCACTTCTTCATCAGCATCTCCTGACTGAAGCCCTCAATCATTTACCTAGTTCCTTCTAGTCAGTCCTGTGTACTTTTAAAAAATGGCCTAAAACATTAGACAGTTGTCGATATTCACCAGAGCCTCATTTATTGCTTGAAGAAAGTGTCTTGTGGGAGGGATTATCAACATTGCAGCCAAATCAAACCTTAAAGACCTCCCAAAATGTTTCCGTTCATTGCTTTTATGctgtttcttttctatttttttttctatcccTTATCTCCCCCAACTTTGCCTTCAACGTTCGACCCTCAGGCTTTGAGTCTAAACATCAGTAGAGCCAGAGCAACTGAGTCACTTCTTGTAAGCACCAGAGCTGCAAGTTTCTCGGGTCACCTGCCCTCTGGATTGAGGAAATACCCTCAGGAGGGGGCACTGTCCTCCTTGACAGCCTCGTCCAACCAGGCCAAAGCTCTTCTGGCTAGTCTCTCCACATCCAGCCTTTCAGCTGAGGCCCTGCTCCTCTCCTCCACCTTCAGACACAACCGGTTACTCAGAGAGCAGAACTTCAACTCTTCAAGCCTTCCTCTTCACGTCTCCAATGGCCGTTCTCCTCCTTCTCCAACCTCACCCACATCCTCTTCCTCGCCCCAATCGCCCTCTGCTCTCACCTCACTGAGTCTATCCTCACTGGCTCTAAAACCCTCCACTACCCGCAGCCTGGAATTCTACAAGGAGCAAAACAAGACGGAGCCAAAGACGGTGACTCCGGAAGACAATGAATAACCTGGCTGTAAATGTTCCACATATGGAAAGCAAAGACTGCAAATAGAATAAATTTAATGCAACTTACCTGAAAGTTCCTGGAAGGTTAGTTTCTGTAGCGTATTGTTTCCTACCCTTTCCAGGGCTATCCCTACCAAAACGCCTTTAGGATAACAATTAAGTAGTGCATGGAGGTGGATAACTTATTGTTCTACATCACAGGTTTACTTTTCTCTAGCTTTTGAGCAGATTCAAATTGTACACCCTACTTTGACATGCGTTTCTGCCAGTTCGCCAAACTAGAGAACCAACAGATGGGCTTGGACACTCACCACCAGCCTGTTTCCAGCTCCACCACACAGCCAGCATCACAACACCCACGGGAGGCCTGGGGAAGGACTCTTTACCCAAACCCTCATTCATTTGCCAAATCTCACATGTTGGAGATCTAGCTAAGTTCAGTAGATGTCCATCAAGTGTAAAATCAAGACTGTAAGACTATGTAAAACCAAGTAGAGTTGCAATAATCGAAAGTAAGTACTGTTGTAGTCGGTGTTTGTTGAGACGTTTTATTGCTCATATCTATATCAACAAAtggaatgtttttaaaaatatacagaaaaaacCTTAATGGAGGCAGCGTTACTCGTAATGTAGACTTTGGCTAACAGTTGTACTGCTAAAGAGAAATTACTGAAATTGGTGCTATGGTTAATATTTTGCTGATTATCCACTCACCTTAAAGGAActgttcaccccccaaaaaatgatTTAATCAATTAAACATTTATGTATTGTTCCAAGCCGATATAacaaattttagaagaaaaaaaaagtcttttatttatttattttttgtagtgtagGGTGTGATTTGGACCTCATTTTATGTTCCAGAAAGTCATAGAGGCTTGGAATTGACATAAAGGTGGATGATGACATCATTTatcattttaggtgaactaatcctttaatggTCATACACTGCCTAAGAGTACAAGTTTGTTCTCATTTGCACACAAATAAGTCTTCATACAGACATTTTACATGCTTGCTATAACTTAGCACAAGTTTTCATGGCAACCAAGGAATTGTGGGAAACTGAAGGCCTGCATGCTTTAAATCACCTAAGTATATTGGATGGAATCTGGCTCAATTTCATAGGAGTCATTGTTTTCTATATATATGTACACTACTACCTAGTAGTCATTAAAAAAAGCACAACatggtttagagcaggggtgtccaaactcaatcctgaagggccagtgtctTACCTATTTTAATTCCAACcctaaataaacacacctgaaccagctaatcaagctctttctaggtatactagaaacttccaggcaagtgtgttaAAGGACACtaaccctccaggaccgagtttagacactcTGGTTTAAAGGCTAGTGATAGTACAATGATCTGACAATCATCAAACATTCGGCACAAGCTTGAGTTAACCATTGAGTCTTGCAGATTGAATTCCAATTTAAAATCAGCTTGTAATGGTCACCATGTAAGGATGTCACAAGTAAGAAGACTGAAGGTAGTTCCACTTTGCGTATGCCAGTGGGCATGGTCCATCACATAGAAGACATCTATGTGAAAAAGCATTCCATCTCATCCTTTCTCCTAATAAGCTAATCAGACTGTTCTATCGAAACCTCATGCACttagatttacttttattttaacaaGGCAATTGTGTGCAAGTTTATGATTACCTACAAAGAGGATACAAATATGAATATCACATCTATTATATGGTTTCATCTCAAAGTTTGTTTGGTCATCAAGGCTCTGGTTATGCCCACTCATCTTCCTATCCCATTTCAGCCATCATGACATTCGCACACACTCTGTTAACGCCTTTTTCCCCTTCTCACATCAATATTTCTATGTTCCCTATGTAAATTTGTGAATGCCACAACCTGCAGGTTTTGAGCCCAGAGAATTTAAATGTGAAAAGGTGACTGAGAGAGGGAATATAATAAGTTGAATAGAGCAAGACGGGAGATTTTTCCAGCTTTCTGACAAAACGAATGTGTGAAATTGATTTCTCGTGGTGCAGGGTTTAAAATAATGGCTTAAGCACTATTTCGACGGCGAGAGTAAATGGCCAGAGGGAGAGATTAGTGGTGTTACTCCGTGTCTCTCAGCCAAATCGGTCTGTAACTCATGTCCGAAATGCACAATGATTCACATGGGGAGGTGCTGGGAGAAACAAAAGGTCAAGCTTAGCCTGTTGCATTCATAGAAATCTCTTAATTTAAGGCACGGTTTAAATGTGGTGTGTGGATGAAAGGAAAAATGAGTTTATTCGAGATTAACATCTGAATCTGCGAGTTATACAAAAAGCTGAGAAAATTTCATGTTATGCCTGTGCAAAACAACAAAAAGCATGTCAGCCAAGAgttatgtccgaattcataaaaCAGACAAAAGGTCCCACTGGACTTACTACTCTGAGCGAGATTTAGACTTATGGACTCTTAAGCCTAATGGTCTTGCTCCATTCCCAGACATTCATCATATGCGCAAGTCAGCACGGACCACAAAACATATCAGACCCATTTGAATTACGCAGTAAGCTCAGTAAGAGAAATGGTGAGTCAGAATGACTATTATAGACTGTGGCTGTCATGAGTCTGATGTACTTTAGCTCAACTTTGAACAGCAGAGTTGTTATTTAGACTGAAGGCAATTGGGGGAGAGGCTACTTTATGTCCCGCCTTGTCTTcctgtttcagttgagattaaaCATTggatgcacatttcaaagcacttcaaacACCTTTTTAATTGTCGAATACTTCTACAGTGCCTGTTGCTGACTATTTAAGTAAATCTTGGAGGTTTgaggtttcatttttaaaaatctagtgAAGCAGATGGTGATGGTTCTCTGAAGCCATTTGGTGATTTTCATTCAACACTTCACATTTAAATATCGGTTTGGCTTTCTTGAAACCTCAGCTGAGATGGTACAAAAAAGCACAACAGTGGGGACTGTACCCAGTTGAGAACCTCCTAAAGGGGATTGAGCCATACAAAGCAGTAGAAAAGCACCATAAAATGATAAATGGGAAAACCTGCATTTTGGTGGACACTTGTACATGGCGGCCAGTGCATGTCTGTAAAACTACTGAAAAGTCTGAATTAGGTGAGCATCATATTGCGCTATCATAGAAGGCCACAGAAGAGGATTTGT

Function

GO: NA

KEGG:

id description
ko04131 Membrane trafficking

Ensembl:

ensembl_id ENSDART00000148107

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051861 lncRNA downstream 92043 37136418 ~ 37143881 (-) True XLOC_026622
TCONS_00053073 lncRNA downstream 263702 36969403 ~ 36972222 (-) True XLOC_026619
TCONS_00053072 lncRNA downstream 281836 36953625 ~ 36954088 (-) True XLOC_026617
TCONS_00052478 lncRNA downstream 624900 36610334 ~ 36611024 (-) True XLOC_026609
TCONS_00053071 lncRNA downstream 648788 36583100 ~ 36587136 (-) True XLOC_026606
TCONS_00053074 lncRNA upstream 105047 37581522 ~ 37584807 (-) True XLOC_026625
TCONS_00053075 lncRNA upstream 157625 37634100 ~ 37649261 (-) False XLOC_026626
TCONS_00051868 lncRNA upstream 157625 37634100 ~ 37649389 (-) False XLOC_026626
TCONS_00051869 lncRNA upstream 158211 37634686 ~ 37639858 (-) True XLOC_026626
TCONS_00051872 lncRNA upstream 192688 37669163 ~ 37670175 (-) False XLOC_026627
TCONS_00051860 mRNA downstream 87330 37135516 ~ 37148594 (-) False XLOC_026622
TCONS_00051857 mRNA downstream 153306 37059803 ~ 37082618 (-) False XLOC_026620
TCONS_00051858 mRNA downstream 153306 37064901 ~ 37082618 (-) True XLOC_026620
TCONS_00051854 mRNA downstream 291175 36904041 ~ 36944749 (-) False XLOC_026616
TCONS_00051853 mRNA downstream 303409 36904039 ~ 36932515 (-) False XLOC_026616
TCONS_00051865 mRNA upstream 82016 37558491 ~ 37571601 (-) False XLOC_026624
TCONS_00051866 mRNA upstream 83865 37560340 ~ 37585863 (-) False XLOC_026624
TCONS_00051867 mRNA upstream 87470 37563945 ~ 37588855 (-) True XLOC_026624
TCONS_00051870 mRNA upstream 185969 37662444 ~ 37699992 (-) False XLOC_026627
TCONS_00051871 mRNA upstream 188456 37664931 ~ 37681824 (-) False XLOC_026627
TCONS_00051859 other downstream 160111 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051856 other downstream 267931 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051846 other downstream 479775 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051819 other downstream 989129 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051818 other downstream 989202 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051873 other upstream 197173 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051881 other upstream 290810 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051892 other upstream 1436903 38913378 ~ 38918717 (-) False XLOC_026635
TCONS_00051900 other upstream 1761621 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051909 other upstream 2172970 39649445 ~ 39649562 (-) True XLOC_026651

Expression Profile

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