RNA id: XM_021580442.2


Basic Information

Item Value
RNA id XM_021580442.2
length 4846
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110502416
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 19944035 ~ 19955946 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCAGACTGCTTCTTATATGAATGGTGGGGACACTACATTAATGACTAGGACCTGTGGGCAGCTCTTCCTGCTGTTGTTCGTCGTGCTGAGTGACGTGGGACGACACAGGAAACTTTAACACAGTTCCTGTTAAGCAGAGCCAGGTGGTTTTTGTGAATCAGCTTTCGTGGAGAGTACAAATTCCTATCGGGGTGGATTCACTTTATTCTGTATCCTCTGTCTCTCCGCCTCTGCTTTATTCTCTCTATCTcggtctccctccctcgctctctctctatccttctcttacTCCCACTCGCCTGTGAAAGTACTATATCGGCAAGAGCTCTATGTTGCAGAGGGACGATCATTGGCAAAAGACACAATAAATGCGATTAAAGTTAGCCATCGTGGCCAGACAACCAACTCCGGAGAAACGTTGAAAATGGCGGGCCATGTTCCGGGGATCAAAGAATGAAGTGCCTGGGAACTTTTCTGGAAGTGTTGTACCCctgtgattgtgtctgtgtgctcaGGGAGGCTATTTTGCAAAGCGAGACCAATCATTTCTCTTGATTCCCTGACTGAGAGCTGGCTGACAGATGAGGACAGAGTGAGCGAACCCCTCTATTAGGACCTGATATATTTCCCAAACAATTTAGTGTATTCATGAGGCAATGCAAATGTGGAAGCAGCAAAATGACCGTAATCAATTGAAACAGCGAGCGTGTCGATCCATCGCTCTGATTATTTGGAGATCATCTATCAGCCTGATGTGTATGTAACAAGGCGAGGTGGCATTAAATCGCTTTTAAGTTTCAGTGATAAGTCCATGATCATTGGGCAAGTGAGTTGGACAATGAAAATAGGGCACCTTGGCAGGTGAGGTAAGCGCTCCCCGAGCATTAGGTAGGTGACTCTCTGGTCTAAAAGGTGCTGTGTTAAAACAAAGCCACAGTGTTGAGACAACACAACGCGCAATACTCTCTGCAATCCCTTTTTTCATCTGACAAAGGAAAGAAAGTGGGGGAGGAAAGAAATATCGGAGAGGATAAGTGATTATGGAGGTCAGATACAACCAGGAGACAGAACCGGGGATGGGGCTGAAGAACGGACTAAAGGATGGGAAAGACAGCAAGGATTCCCAGGGAAACCTTTCCAAAACCTTCCTAAAGAATCAGCAGGAGTCCTTCTCACCATCTGGGATGGCGGAAAACTGTGAGAAGAACCGAGCTAGCACGGGGGACCCAGACTACTGCCGTAGAATACTCGTCAGAGATGCCAAAGGGTCTATACGAGAAATCATTCTGCCAAAGGGACTGGATTTGGACCGTCCCAAACGAACCCGGACCTCTTTCACTGCAGAGCAACTCTATCGTCTGGAGATGGAGTTCCAGAGGTGCCAGTATGTGGTTGGGAGGGAACGAACAGAGCTGGCCCGCCAGCTAAATCTATCTGAAACTCAGGTTAAAGTTTGGTTCCAGAACCGACGCACAAAGCAGAAGAAGGACCAGGGCAAAGATTCAGAGCTGCGCTCGGTGGTGTCGGAGACGGCAGCCACCTGCAGTGTATTAAGACTCCTAGAGCAGGGCCGGCTCCTCACGCCGCCAGGTCTGCCGGGGCTCCTGCAGCACTGTGGCAACGGCACCTTGAGTGTCGCCCTGCGAGGGCCCTCCATGGGCATGGCCAGCAatggaagcagcagcagcagcagtggtgccAGCtcagggacggccgggggcagtCCCCCTCTGCCCATAGTGACCAGTTCAGGGACGGTAGCGGGCCTTCAGAGCTCCCCGTCAGCTCATGGCCTGTTCAGCTTCCCCATGCCCTCTCTGCTGGGAAGCGTGGCCACCCGCATGTCCTCCAACCCGCTTTCTATGGCCGGGAACCTACAGGAACTGTCTGCCCGCTATCTGAGCTCTTCTGCTTTTGAACCTTACTCACGGACAAATGGCAAGGAGAGTATGGACAAAAACGTTTTCGAATGATGTTTTTGATTCGTTTCATTGCTCTCCTTGCTTTTTATCACCTTGGTTTTGTTTGTTTCGCCCTCTTCTGTCCTGtttgtgttgtggttgtcgttcatgtgaatccaattgagcatctgATGCCTCTCGGAGGGAGGAAAACAAAGACATACATTTCATTCTTACAAGAACAGGGTGATTGTTTTTAAGCTTTTGCACTAAATTAAAGTTTCAACTCCATGTTGTGAATTTCAATACAAGTACTCAGAGAAACAAATATCCATGAGATTGCATAGGGGCAGCATTGCATTTTTTTTGCAACATTTTCTCACATTTATTTTGCCGCAATAGCAATCACAAAAAGAGCAACAAAAATGAGTCTGTTTATGTTTTGGTAACACATCACACATGTTTAGCTGCTGCAGGTAATTGGCACATTACACACAAAGCTTTTCAGTGATTGGCCATGGGTGTAACATGATGGTACCTTTTTGATTTTGTGTTTTATTATTTGATTGTTTTGGTTAGACAGTGTTTCGAAGTAGAGAGTTATCAAGCATTACAGCTTGCGGAGTTCAGGTGACAGACTGTCAGTTCAGGATGGCATGGTGAACTTGGAGTTCGGCCCTTGTCAAACATGACATTTCAGTTTACGGAAATATCACAGGTCTCTTTTTCTATTTGCAGATACTCATGAGGAACACAGGCATTTAACATACAAATGCATTTACATATGCAGATGTTTTGCAATATGAAACTACAATAACAGTATTTTATACCagtttgtatttgtttttatgtTTGGGCCAAAACAAACTAAAGAAAAATGTTGTCATACAGTATGATAGTTCAATTGTTCTGTGCTAGTTGTTTTATAAATGGGTTTGTGAGGGTTTTCCCAATATGATTTTAAACACAGTCTACATTTGTAACTTTTATGTCTTAAAGCTGCAGTATTCCACTTTTTCGTCTGTGATTTTAAGAATACTGGAGTGGTAGTCCAGATTTCCATGTAAGAGTTGGAGAAAAGCTTGGACGTGTGGGGTTGGGCAAAGGGAGGACGGAGGAAAGGGTTCTGGAAAAGCTTTTGAACTACAGTAAGCAGCTTGCATAGTTGGATATAGAGAATTGAACTTGATGCTACACGATTGAAAACAGTGCAGAAGGTTTTGCAATCTTTTAAGACCTTTTCCCGTGTGAAATGTTTTAAGATCAGTCACCATGGCGGGAGGTTTAGTAGGAAAGGAGCATGAGGTGAGTGAAATTACTGTAGTACAAAAGAAAGACAAATGAGAATTGTACCtaaaattgttattttattgtaaaTTATTAATGTCCGTAATTAATAGATGATTAGTATGTATATCTGAaaaataatgaatgaatgaatgaatgaatgaatgtaaGGGAGGAGGTGATAAATCAATCAAAGCTCTttggtgctgttgttgtgaaatAACTTGAACTTCGTGACATGTGTGGTAAGAGTGTGgatacatattatatacagtatatatgcctACCAAAAAAGCCacgtgtgtttttttgtttgttcatACATTCATCATGATGATAATCCAGTTATGATTAAAAAAAAGGCCATGTTGTACCTTCATTGACAATGGGTTCGAATAGCagtttacttaaaaaaaaaaaaatattcaaatgaAGTGTTATGCCCTATGGAGAGGACCTTTGTCTGTATTATTCTAGGTagcaactgaaaggttgcaagatcgaatccccgagctgacaaggtcaaaaatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcccagttaaataaaagtacaaaaaaatttaaaaaataataaccaGGGTCGTGTTAAATAGTAGCATGCGTGTTTGAGGGGAGTGTTTTTGTTTGCTatcttactctaaccctaacagaaaccctaaccataacctctagCTCATGGGAAAATGTACACACATTCAAAAATGTGATTGAGGCAGCGAAGGAGGCTAGGGAAGTGATATTGAAAATATGGTTTGACTCAACTCTGTAAAGTTTCGGTACTAGATGGGCTTCGTTGAAAAATGACAATTGTTAATTAAGAGAGCTACTGTATAGAACTGTCAAAATGGACACTGGAAAAACTTTGTCCGGAAGCCAAGCTATGCAGCGAAAATGACATTTGCAATGTCTGTACATAAGAACCCTTGGAGGCCTTTTCAATAGTAGTGTTTTCTATGGAATAGGAAAAAATCCCACTCTGGCCTATGAAAAGAATTGAGCTAAACCAttcaaagcaacaaaaaaaatgtcacaCAAGGAGGGGAATTGTCTCTTGAAAAAGCAGTTGCAGTGGTCAAAACCATGGAAGTCTGGGCACAAAAAAAATGGGGATGAATGTGATGATCGCAACAATAAAGGTCATAAAGGGTGTCCAAACAAATAAGCACACAGCCCACCATGTGGATTAATGGCATAATGCTCCTGGAATGGCTACCACTCTACCCTACTATATGTAGTGTACGACTGTGTGTCGTACAGCTTAATGTTTGAGTCAATGGAAATAACATAAAAATATGATTGTATTAGAAATTCAATATAAGAAATGTATTAGTGTTAGCCAAGTTCATTAAGTTGCACTTGTATCAAACTGGTGTCAAACTGTCATATATTCAAAAATTCTATGGGCCTCTTTTGTCAAATCAACAATTTAAATATGGACCAGTACAAAGAGCATGGATACAAATGACATGGAATTTCTACCAGTGATTCATAAATGAAGAAGAAATAATCCAATATGGCGGAAGTTCTGGTTCCACTTTGGACATTTACAcggaacaaaaatgtaaacgcaacatg

Function

GO: NA

KEGG:

id description
K09318 VAX; homeobox protein ventral anterior

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2106868 lncRNA downstream 83782 19860017 ~ 19860253 (-) True G1839974
TU2106856 lncRNA downstream 98691 19844927 ~ 19845344 (-) True G1839962
TU2106805 lncRNA downstream 129770 19776227 ~ 19814265 (-) True G1839917
TU2106807 lncRNA downstream 162000 19778916 ~ 19782035 (-) True G1839919
TU2106775 lncRNA downstream 198358 19745441 ~ 19745677 (-) True G1839892
TU2106996 lncRNA upstream 105350 20061296 ~ 20062015 (-) True G1840096
TU2107068 lncRNA upstream 109608 20065554 ~ 20067364 (-) True G1840167
TU2107071 lncRNA upstream 111581 20067527 ~ 20067952 (-) True G1840170
TU2107070 lncRNA upstream 112071 20068017 ~ 20068926 (-) True G1840169
TU2107069 lncRNA upstream 113331 20069277 ~ 20069751 (-) True LOC110502421
NM_001124597.1 mRNA downstream 16168 19891713 ~ 19927867 (-) True LOC100136607
XR_005039163.1 mRNA downstream 62884 19879021 ~ 19881151 (-) True LOC110503056
XM_021580438.2 mRNA downstream 218659 19678988 ~ 19725376 (-) False hspa12a
XM_021580437.2 mRNA downstream 218660 19678988 ~ 19725375 (-) False hspa12a
XM_021580439.2 mRNA downstream 218668 19682475 ~ 19725367 (-) True hspa12a
XM_021580447.2 mRNA upstream 113251 20069197 ~ 20136003 (-) False LOC110502421
XM_021580448.2 mRNA upstream 200457 20156403 ~ 20169212 (-) True LOC110502422
XR_002470326.2 mRNA upstream 346347 20302293 ~ 20306390 (-) False LOC110502426
XM_021580456.2 mRNA upstream 809235 20765181 ~ 20774451 (-) True LOC110502434
XM_021580458.2 mRNA upstream 824834 20780780 ~ 20794423 (-) False LOC110502435
TU2106041 other downstream 558993 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 646291 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 822692 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 1089863 18849697 ~ 18854172 (-) True LOC110502394
TU2104675 other downstream 2213523 17725263 ~ 17730512 (-) False LOC110502361
TU2108760 other upstream 987361 20943307 ~ 20943615 (-) True G1841694
TU2109040 other upstream 1389568 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 3227041 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 3259539 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 3389145 23345091 ~ 23345771 (-) True LOC110502462

Expression Profile