RNA id: XM_021580445.2


Basic Information

Item Value
RNA id XM_021580445.2
length 2196
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC110502420
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20037044 ~ 20058237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACACTGCTGTGCTCTAGGTGAGGATGTTCATGATAAAAGTTGCATGACGTCAAGGACCAGTCAAGAAACTAAAACGCCCTGCACATATCGTTTCTTTCACCACGGTTTGCAGCCGCAAAGTGATTTTTGCTAATGTGCATCTAAGAGCAAATCTTTTTTCGCTCGCTCCTTTGTGGACTCAAAAAATGGGAAGATTAGACACTCTGAGAGAATTTAATTTATTGTCATGGATGAGAGAGGAAAGACAATCGAGGAAGTTGACCCTGGTCATCGTTTTCATCGCCTTGCTGCTGGATAATATGCTTCTAACGGTGGTCGTCCCCATCATCCCCAGCTACCTATACACAGTTGATGATGCAGCAGCCAACATGGCCAAGAATCACACCACGGCCTCCCCACACACCCCTTCTGGAACCTTCCAGACCATCGTGTCCCTCTATGACAACTCTGTCAGGGTAACCAGCGGGGGCCCAATGGACTCCACACCCATACCCTTGGATCAGGCGCAGGCGGTCTCTCTTTCCACCTCGGCTCTCACACCCCACAATTCCACAGAGCCTGACTGCCCCAAAGCAGATGACCAGCTTCTCAATGAGAATGTGAAAGTGGGACTACTTTTTGCCTCCAAGGCCACCGTACAGCTCATCACCAACCCCTTTATTGGGCCTCTCACCAACAGAATAGGATACCAGATCCCCATGTTTGCCGGGTTCTGTATTATGTTCCTGTCAACCATTATGTTCGCCTTCTCATCGAGCTACACTCTGCTGTTTCTGGCCAGATCCCTGCAGGGTGtgggctcctcctgctcctccgtGGCTGGGATGGGGATGCTTGCCAGTGTGTACACAGatgatgaggagaggggaaatgCCATCGGGATAGCACTGGGTGGTCTGGCCATGGGCGTGCTGGTGGGCCCACCATTCGGCAGCGTCATGTATGAGTTTGTGGGGAAAACGGCGCCTTTCCTCATTCTGGCTGTTCTGGCTGTGCTGGATGGAGCACTGCAACTGTTCATTCTCCAGCCCTCAAAGGTGGAACCAGAGAGCCAGAAAGGGTCCTCACTTTGGAGCCTTATTAAAGATCCATACATACTCATTGCTGCAGgatccatttgttttgcaaacatgGCCATTGCAATGTTAGAACCAGCGTTGCCTATTTGGATGATGGAGACCATGTGTCCAAGAAAATGGCAGCTAGGCGTTGCCTTTGTGCCAGCCAGCATCTCCTACCTTATTGGAACTAACATCTTTGGCGTCCTCGCGCACAAGatggggagATGGCTGTGCTCTCTCATCGGGATGGTCCTCGTGGGGGTTAGCATCCTCTGTGTCCCTTTCGCTAAGGACATCTATGGACTGATACTTCCGAATTTTGGTGTTGGTTTTGCAATTGGCATGGTGGATTCCTCTATGATGCCAATCATGGGATATTTGGTGGACCTGAGACATGTGTCAGTCTATGGCACTGTGTACGCCATTGCTGATGTGGCTTTCTGCATGGGCTTTGCTTTAGGTCCGTCCGCTGGAGGCGCCATAGCAAAGAACATTGGGTTCCCCTGGCTCATGACCATCATCGGCGTCGTGGACATCCTCTTCGCTCCCCTCTGCTACTTCCTCAGGAGTCCTCCTGGGAGGGAAGAGAAAATGGCCATCTTGATGGACTCTAACTGCTCGATGAAGACCCGATCATACTCAACACAGGGGAACACAGAGTAcgaagagatggagacagagtaCGATGAGTATTAATGGACACCAGACATGTATGTTACCTTCCAGAGGATCTATTTTGTTGTACAAAAACAGAGATAcaatgtttattatttttaacAGCGAAGCTGTTTCGTTGTGAGTGTCCGTCTTCACTGTTCTGTGTCATTGTTATTGTACGACTAGAGCAAACCAAAGTTGTTGTCATTGCCCTGTGTTTATTTTGAGCCAACAGCCTTATCCAATGGAAGTGGGGCCGTGTCAAAACAGGGTTTTCATGGGCCGTAATagcagactgctgtgagtcataTTTACTGAATAGTTCAGATGAGGGTGGTATTATACAGTCGTGTccaaaagttttgaaaatgacacaaatattaattttcaaagtctgctgtctcagtttgtatgatgccaatttgcatatactccagaatgttatgaagagtgaccagatgaattgcaaagtccctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2106613 lncRNA upstream 144430 19891684 ~ 19892614 (+) True G1839747
TU2106631 lncRNA upstream 179186 19857585 ~ 19857858 (+) True G1839765
TU2106626 lncRNA upstream 182286 19854529 ~ 19854758 (+) True G1839760
TU2106619 lncRNA upstream 190392 19846438 ~ 19846652 (+) True G1839753
TU2106547 lncRNA upstream 218324 19815218 ~ 19818720 (+) True eno4
TU2106742 lncRNA downstream 3827 20062064 ~ 20064720 (+) False G1839872
TU2107005 lncRNA downstream 22271 20080508 ~ 20080832 (+) True G1840104
TU2107009 lncRNA downstream 25811 20084048 ~ 20084400 (+) True G1840108
TU2107017 lncRNA downstream 37081 20095318 ~ 20095694 (+) True G1840116
TU2107023 lncRNA downstream 42532 20100769 ~ 20101115 (+) True G1840122
XM_021580444.2 mRNA upstream 5761 20008638 ~ 20031283 (+) True LOC110502419
XM_021580443.2 mRNA upstream 42148 19937700 ~ 19994896 (+) False LOC110502418
XM_036960065.1 mRNA upstream 42148 19973793 ~ 19994896 (+) True LOC110502418
XM_021580441.2 mRNA upstream 218316 19767745 ~ 19818728 (+) False eno4
XM_021580440.2 mRNA upstream 218316 19767747 ~ 19818728 (+) False eno4
XM_021580449.2 mRNA downstream 89370 20147607 ~ 20156413 (+) False LOC110502423
XM_036959790.1 mRNA downstream 146241 20204478 ~ 20207839 (+) False LOC110502425
XM_021580451.2 mRNA downstream 146246 20204483 ~ 20207839 (+) True LOC110502425
XM_036959768.1 mRNA downstream 150381 20208618 ~ 20349384 (+) False LOC110502424
XM_036959769.1 mRNA downstream 150381 20208618 ~ 20349384 (+) False LOC110502424
TU2106218 other upstream 514032 19522264 ~ 19523012 (+) True G1839383
TU2105491 other upstream 1088041 18948517 ~ 18949003 (+) True G1838719
TU2104111 other upstream 1736768 18289880 ~ 18300276 (+) True LOC100136626
TU2103908 other upstream 2089669 17943462 ~ 17947375 (+) True LOC110502370
TU2103510 other upstream 2711684 17322174 ~ 17325360 (+) True G1836916
TU2106744 other downstream 5607 20063844 ~ 20064987 (+) False G1839872
TU2106747 other downstream 5607 20063844 ~ 20064720 (+) True G1839872
TU2107244 other downstream 300560 20358797 ~ 20516886 (+) False LOC110502429
TU2107245 other downstream 433790 20492027 ~ 20516886 (+) True LOC110502429
TU2107504 other downstream 723628 20781865 ~ 20785203 (+) True G1840558

Expression Profile