RNA id: TU2107069


Basic Information

Item Value
RNA id TU2107069
length 475
lncRNA type sense_over
GC content 0.32
exon number 1
gene id LOC110502421
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20069197 ~ 20136003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTTATAGGCCAAACATGTATGACCCATTTTGTTTAACCAGCATATTAACTGTACATGTTAGTTCTCTCTCTGTTACAATGTTTTCTTAGCTTTTTGGTTGGAGGGATAGTTATAATAATATTTTTCtcaaatgtatcattttaaaatgttgtaaGTTATTTGATTAAGCACCTGCTTTTGTGTTCTTGCCCCCCTtccaaatctttttttttttttttgtatggatATAATATCCCTGAACTAAAACATaactatggtggtggtggttttatCCAATCATGTTACTTCAGACGGAATGTTTGCTTTTGAAATTATTCTTGATAAATGCAAAGTATTTATGTAGTCGTGGCAGAAAGTTTTTATTTATATGGTTCATCTCAGTATGAATATTGTTACAGGAGCACATGGATCTCTGTTTTATTCTatgtacagtgccagtcaaaagattgaacacacctactcattccagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2107070 lncRNA downstream 351 20068017 ~ 20068926 (-) True G1840169
TU2107071 lncRNA downstream 1325 20067527 ~ 20067952 (-) True G1840170
TU2107068 lncRNA downstream 1913 20065554 ~ 20067364 (-) True G1840167
TU2106996 lncRNA downstream 7262 20061296 ~ 20062015 (-) True G1840096
TU2106868 lncRNA downstream 209024 19860017 ~ 19860253 (-) True G1839974
TU2107072 lncRNA upstream 4024 20073775 ~ 20074013 (-) True G1840171
TU2107074 lncRNA upstream 5063 20074814 ~ 20075026 (-) True G1840173
TU2107086 lncRNA upstream 19988 20089739 ~ 20090077 (-) True G1840185
TU2107093 lncRNA upstream 30621 20100372 ~ 20100575 (-) True G1840192
TU2107101 lncRNA upstream 35050 20104801 ~ 20105047 (-) True G1840198
XM_021580442.2 mRNA downstream 113331 19944035 ~ 19955946 (-) True LOC110502416
NM_001124597.1 mRNA downstream 141410 19891713 ~ 19927867 (-) True LOC100136607
XR_005039163.1 mRNA downstream 188126 19879021 ~ 19881151 (-) True LOC110503056
XM_021580438.2 mRNA downstream 343901 19678988 ~ 19725376 (-) False hspa12a
XM_021580448.2 mRNA upstream 86652 20156403 ~ 20169212 (-) True LOC110502422
XR_002470326.2 mRNA upstream 232542 20302293 ~ 20306390 (-) False LOC110502426
XM_021580456.2 mRNA upstream 695430 20765181 ~ 20774451 (-) True LOC110502434
XM_021580458.2 mRNA upstream 711029 20780780 ~ 20794423 (-) False LOC110502435
XM_036959797.1 mRNA upstream 711029 20780780 ~ 20795549 (-) False LOC110502435
TU2106041 other downstream 684235 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 771533 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 947934 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 1215105 18849697 ~ 18854172 (-) True LOC110502394
TU2104675 other downstream 2338765 17725263 ~ 17730512 (-) False LOC110502361
TU2108760 other upstream 873556 20943307 ~ 20943615 (-) True G1841694
TU2109040 other upstream 1275763 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 3113236 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 3145734 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 3275340 23345091 ~ 23345771 (-) True LOC110502462

Expression Profile