RNA id: XR_002470326.2


Basic Information

Item Value
RNA id XR_002470326.2
length 3277
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110502426
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20302293 ~ 20306390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCTTAGTTGCATAAACAGGTTAAAAATCATAGAGTGACTGATAACCATATATTGTACTTCATTGAAACGTAAGAATAAGATGAGAGAAAGTTAAATATCAGGAGGGCAACTCAAATGAAGGAGGAGGAGCGCTGAAGGGCTAGAGTGAATCACTGCTGAGGAAACTGATTGGATCATATTCGTTGACATACATTTAGAAAACACAATCCTTCTGGGGAAATGGAGAGTGCACGCTCTCGTGTTTGTCAACGTCACCACAGCACCTCTACATGTTGGATTGGGGAGTCTAATGTATGTAAGGGGGCGATGGCGGACATACTGCATGCTGGTTCGGGTAAGATTTTTGCACACAACATGACAGTGCAATTTGGTGGTTCAGGGGGAACAGTCCCTCTAGTGAGGATGAGAGAAATCGGGGGGTGGAACAAAAGgttcccatgtggctcagttggtagagcatggcacctGCAATGCCagggttcgattcccatggggaCCAGTATGAATAAAGTATGAACTTGTACGCGCTccggataagaacgtctgctaaatgacaaaaaaaaaaagggggaaagagTTAGCGTTTTGCTGCTACTGCTTCTCAGAGTAGAGACCCCTGAACATATATTTCTACAACCCCCACTACGACTCATCTCTTAGCCACGTCCTATTCCTGTCCCCACCCGCCTCTTCTCCAGTCTAGCTGTGTCTGACAAAGGGATAGACTGTGTGCTACGTGCATTCTGCCGCCCTGCTGCGTTGAGGAAGAGGTCGCTTCATCTCTTCTCtactaaaaaaaaataaacacaatttCGTTGGCAGTAATAGCCCCGGTTGTGTGTGCTCAACCAGCCGCCGAGGAAGAGACTGTGGGAAGCTTGAGcgttctcccctccctcctgccACAAGGACCCGGCCGCTCTCTCTTTCCGCTTGGTTATGCAATGCACGTCTCTCCCACGGCTTGCACAGGGGACCCGCCACAACACAGCCGCCACCAGCTGCAGGTGCAGACCAACATAGCAACAGCTACGCAGCAGCACTCAGGCTTTCCAGCTCTCTGGGATTTTACTGTTGTACTTGGCTCTTTGGAATACCACTTGCTGAGCGGTGGGCTGTCTGTAGTAGCCGCCGCAAGCGCTAGCGTCTCCAGAGTAACCATGCGCGACTGGGCCTCCGGGTTTCAGCGGCAGGAGATAGAGAGACGCCTCTGAAAGGCACTAATTGCTCTGCTCCCGAAGGTGGGAAgcaagaaaggaggagagaagagggggcgtGTACATTTGTCACAGAGACTGTGGCGCTCGCTCTTTGAGCTGCTAAGAGGGTCAAAAAGACAagaagagctgaggaggaggaagaggggggctGTGGTGGAATTTGGAATTGGAAAGAGAGGGGCGGGAGGATGGGAATcatagtggggagggagggggagcttATGGGGAGAGGGTTTCTCCAAGCCCCCTAGTGCTTCAGCTGTGGTGGAGGAGACCTGAGGAATAAAACAACAAAAGCAAAAAACGGAGACTATAGCGCAACCAACACCAAGGCAGCATTTAACCCAGGGGGTGGCGCAGAGGACTGGAGAATTCATACGGCAAGAAGGGGGTGATTTTTCACAGAGAGCTGTTTCTGCGCAGAGCCACGCACCAAGGCGCAGTTGGGAGCCAGGATCTCCTTTTCCTTTTCATTCCTTCTCTCCGACGCTGGGAGCGAGGCTACGCAGCCAGCCTCCCCCGCTTCCCAGTAATGCAGGCTCCTGTGTGTGGCCATGCTTCCCCGCTCAGGACCCAAAAGCATGCTGGATGTCACCCCACTCTTCACGCCATAGGatAAGTGCCAGCAGCACCCCTGCCAGGTTGAGCGAGCATTATGGCCATGGGTCCCACGGTCATAACTATTGAGGAGGTGCGGGCGCTGGAGagtaaggaggagcaggaggagtccATTTTGGCCTTGCTGGGCATCGTTGGCACCTTCCTCAACCTCTTTGTCATCGTCTTTGTTTACATATACACTGTCGTGTGACTTAAGCCAGAGTCGGAGTGGTCCTCCAAACGACAAGGCACAAACCAAGATTCCTTTTAACCCTAAATCAACATATACTGGATTTGAAAACCAGAGCTCCTCCTCCCCTTAACTTTATACTAGTTAAAAACGACATGAGCAGTTTCCCAACACAGAGAGTGAGGGTGGACAGTTATGTGGCGGAGACGTCTCACAGCCACAAACCAGGGAGATAACAGTGAGCTGGTGGCTACATCAGGACCATAGCTGTGCTGGATCTGGATCCAGGATGGGCAGACAGACACTGGCCCTACCCCAGCCAGGGTTCACTTTCCCAGGCTACAGGCCAGCACAGCCTGGAGTGGAACATCACCTTGGACTCATTGGCGTGATGAGGGAAACAGTGTTACTGACAAATCTCCTTTGTCAAATGGATTATAAAAACGGAATAAGGGACACTGATGTCACTGGCCTGGATGGTTCAAGGAGCATGGCGTGGAGGAGGCAGTGTATGCAAAGAACACTGGGAAGCCATTACAGATGAACTGTACCTCACCGTATCACATTGGTAATCTTCCGGGTACAGCATTTTAAACTGCTTGGTGGGATGTCACAGCGCACGTTACCCCGGCAATGTGGCTCTGGAGGAGCTTTAATGTAATGTGCTGCTTGCCGTCAGATAGGCCACACacgcgctcgcacacacacacacacacacacacacacacacacaccccaaaacCAAAGGGTTAGTCACCGCTTCTCATGATTTGACAGATCACAACAGAGCGATCTCTATTGTCTGTATCTCGCTCCCGGCAAGAAGAGTGGCAATGACTAGGAAACATTTCTATTCCAATTGACCACCTGGGACTTCAAAACCAAACTGGAGATCTGCAATAAAAAGGGAAGTGGAGAGAAAGACCAATAGGAGAGCCTGCGATAGGAGAGCCTGCGGTGGAGATGAAATCATCCGCAGGGGTGGAAAGGACCTTGTGGGCACCAGAAAGAAAAGCTCCATTCTGCATTTACTAAAACATAAGGCCTGACTTACACTGTCTCTTTCTGCATATTTTTCCACGTTCTGTTCGGttattggggggtggggggactgACGTATTTGTTCATGTTGATTTCAGGGTAGTGTTAGTAATCCTGTTTctgtataaaaaaatgtaaagcttttataaatatatggataaacTCTAGATGTACTGTGCTATAGGGAAAATGTAAACAATAAAGTTAGAATGTATGAATTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2107186 lncRNA downstream 99066 20203004 ~ 20203227 (-) True G1840283
TU2107151 lncRNA downstream 125602 20176480 ~ 20176691 (-) True G1840248
TU2107097 lncRNA downstream 146081 20154684 ~ 20156212 (-) True G1840194
TU2107121 lncRNA downstream 171729 20129973 ~ 20130564 (-) True G1840218
TU2107112 lncRNA downstream 183891 20118107 ~ 20118402 (-) True G1840209
TU2108358 lncRNA upstream 42402 20348792 ~ 20402232 (-) True G1841334
TU2108440 lncRNA upstream 87666 20394056 ~ 20411811 (-) True G1841394
TU2108517 lncRNA upstream 346399 20652789 ~ 20658335 (-) True G1841470
TU2108599 lncRNA upstream 370425 20676815 ~ 20707882 (-) True G1841547
TU2108671 lncRNA upstream 497997 20804387 ~ 20804679 (-) True G1841610
XM_021580448.2 mRNA downstream 133081 20156403 ~ 20169212 (-) True LOC110502422
XM_021580447.2 mRNA downstream 166290 20069197 ~ 20136003 (-) False LOC110502421
XM_021580442.2 mRNA downstream 346347 19944035 ~ 19955946 (-) True LOC110502416
NM_001124597.1 mRNA downstream 374426 19891713 ~ 19927867 (-) True LOC100136607
XR_005039163.1 mRNA downstream 421142 19879021 ~ 19881151 (-) True LOC110503056
XM_021580456.2 mRNA upstream 458791 20765181 ~ 20774451 (-) True LOC110502434
XM_021580458.2 mRNA upstream 474390 20780780 ~ 20794423 (-) False LOC110502435
XM_036959797.1 mRNA upstream 474390 20780780 ~ 20795549 (-) False LOC110502435
XM_021580457.2 mRNA upstream 474390 20780780 ~ 20795640 (-) True LOC110502435
XM_021580460.2 mRNA upstream 489780 20796170 ~ 20801346 (-) False polr1c
TU2106041 other downstream 917251 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 1004549 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 1180950 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 1448121 18849697 ~ 18854172 (-) True LOC110502394
TU2104675 other downstream 2571781 17725263 ~ 17730512 (-) False LOC110502361
TU2108760 other upstream 636917 20943307 ~ 20943615 (-) True G1841694
TU2109040 other upstream 1039124 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 2876597 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 2909095 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 3038701 23345091 ~ 23345771 (-) True LOC110502462

Expression Profile