RNA id: TCONS_00004941


Basic Information

Item Value
RNA id TCONS_00004941
length 810
RNA type mRNA
GC content 0.56
exon number 1
gene id XLOC_002659
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15050469 ~ 15053614 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTCATTCCCCCTTTTTTCCCCACTCCCCAAATCGATTATGAGAACACCTGGGATTTTTATTTTCGGCATGGTGCTAGGACCTTGCGGCTGGATCTTGGAGCTCGTTTGCACGGTGGCACCAGCCTGGCGCACGATCAACAACATCAGCGGGGAGTCAATCGATCTGGTCCTCCAACAAGGATTATGGGACATCTGCAAGACTTACTCGTCGTCCCAGAACATCCTCTGCGGGCAGGTCGACACGCAGTACTTCAGCGCGCAGATCATCACCATCGCGCGGGGCTTGATGCTGTCGTCGCTAATCCTCAACCTTATTGGCATCGGTGTGGCATCTGCTGGAGTGCGGTGCTGGACTGAATACCCGCAGTGGACAGTGGCTGGGGTCGGGGGTGTCCTAATCTTCATCTCCGGGGTGCTCACCATCATCCCGGTGTCGTGGTACACCAACATCATGACCACCATCCCCGCCGCATCCACGGAAGTCCGCGTCGGGTACTGCCTGGTGCTAGGCTTCATCGGGGGCATCTTGGAGGTGCTCGGGGGTTTGGTGATGTCTATCGGCTTGTGTCAGAGATGTGGCAGAAGTAAGCCAGCTGATAGGACGAGGATAAACGTGGTCAGGTCCGCGCACAACCCAATGCCGCCGCCGGCGCGCAGAGACACGGTGCCCAGTGTGAGCAGTTTCAGCAGTGCCAGCAGCGCGCCCTATTACTCCAAACACACCGAAACAGACTTCTACAGAGCCAGAAAACCGGACAGCAGACCAGTGAACGCTTACCAAACACGACCTTACGATTCAGATCTATAG

Function

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-471 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in brain and kidney.

Ensembl:

ensembl_id ENSDART00000157446

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006013 lncRNA downstream 9950 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA downstream 17738 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00006012 lncRNA downstream 1750725 13298839 ~ 13301973 (-) True XLOC_002642
TCONS_00006011 lncRNA downstream 3154123 11895373 ~ 11898575 (-) True XLOC_002638
TCONS_00004895 lncRNA downstream 3719585 11331969 ~ 11333113 (-) False XLOC_002632
TCONS_00004942 lncRNA upstream 28903 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00004943 lncRNA upstream 28903 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00005751 lncRNA upstream 30087 15083594 ~ 15083896 (-) True XLOC_002660
TCONS_00004955 lncRNA upstream 569391 15622898 ~ 15631358 (-) False XLOC_002664
TCONS_00005752 lncRNA upstream 663232 15716739 ~ 15724104 (-) True XLOC_002666
TCONS_00004938 mRNA downstream 3917 15046837 ~ 15048781 (-) False XLOC_002658
TCONS_00004939 mRNA downstream 3917 15047909 ~ 15048781 (-) True XLOC_002658
TCONS_00004934 mRNA downstream 109417 14894653 ~ 14943281 (-) False XLOC_002654
TCONS_00004944 mRNA upstream 67204 15120711 ~ 15128771 (-) True XLOC_002661
TCONS_00004945 mRNA upstream 268015 15321522 ~ 15340412 (-) False XLOC_002662
TCONS_00004946 mRNA upstream 268015 15321522 ~ 15340450 (-) False XLOC_002662
TCONS_00004947 mRNA upstream 268021 15321528 ~ 15340390 (-) False XLOC_002662
TCONS_00004949 mRNA upstream 283926 15337433 ~ 15340362 (-) True XLOC_002662
TCONS_00004937 other downstream 112352 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004928 other downstream 320299 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 564544 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004920 other downstream 1121002 13931569 ~ 13931696 (-) True XLOC_002648
TCONS_00004919 other downstream 1440450 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004948 other upstream 283803 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004954 other upstream 564709 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004975 other upstream 2023926 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004978 other upstream 2050791 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 2092312 17145819 ~ 17156675 (-) True XLOC_002679

Expression Profile

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