RNA id: TCONS_00053075


Basic Information

Item Value
RNA id TCONS_00053075
length 1991
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id XLOC_026626
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 37634100 ~ 37649389 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAAAGTTTGAATGAAGACCAAAATATTAACTACCATAAAATGCCACATGAGGTGTAAACATCAAAATCGACAGATTTTTCATAGCCTTGCAGTGCAGATGGCAGACTCTCCACAGAAAGAACGCAGACAAAAGATGGCAGATAAAGTGTCCTGTCCCCAGAGGCTAATAGACCTACCTGTTTGACCTGAATCACACAATcacattattaaattataactCCCTCCAAAAGCTCTCCAGGGGATGTGTGCGTGAGAAGAAGGCTGTGGACGCTGGGCTTTGGGGAAATGAAGGCTTTAGGATTCGTTATTAAACCAGTGCTGTATCATCCCTCACAGACCCCCTGCGGTTCCCCACAACAGCTTCTCCGTTCGGAAACCAAACGCTTCTGTGTGAAACCAATGTCAAACGGTAACTTATTCAAAAATAAGTCAAGCTATTAGTCTTTTTGTAGCGCTTTATTATGAATGTCATTTTTGAAGCATGTGATTGACTGTAgagcagctctacagatcctaaCTGAGCGAGCCAAAGGCGACAGTTGCAACCTTAACTCAACCAATTGACGTAAATGGTGAAACAGACATTAGCCAACTTGTCCATCATAACATAGCAGCTTGTCCATCCGCAATCTAAATGCTTCTGTGTAAAACCACCGTCAAACTGTaagtaatagttcacccaaaaatgaaaattactccagtcaccctcaagccatcctcTGTCTATATGACTTTATTCTATCAGACAATCTGTAATTTGAATGGGATGCTGACAAGGAAGGcgcggatccaaatgcaagtttaTTGAGAATGATCAGGGAAGCTTTggtcacaatcaggagcaaacagatgtatgcaggcaAATTCAGAGTCTGAACAAAAGTCTTGGTAAAATATACATTCAATAGGTCAGTataggcaggcagcagacaacataaacaaataaacaagttgAGGGTCAAAACCATggcaaagcaaggcaaggaaaatgcatTGTAATGTTCACAGAGCTgtttacaagactcagcaaagaggtATGTGCGTGCACTGTATTAAAGTCCAtctaatcagtctttgagcagctcccagctgtgtgagtgtaatcagtcatGATCTGgaacagttgtgtgtgtgtgtgtgtgtggtgcatgactggaattTGTAGTCCGTATACCAGTGGATTTGTAGTCCTTTAGTGATTTGCCAGgactagatcactggtgattgtgactcAATTCCAGTCAGAGTAGTTTGCGTTTTATCCTGGATCTCCCATGCAGGcccatttttttacatttccaagTGCATAAATCTGTTGTAAACATAACCAATATGCTGCCAGGGGGCTTAATTCATGTGTTATGAAGCAGATCGGTGtgtttttttgacaaaaaatatataatattttttaattataaactcAGGCAGCATGGTgatgcagtggttagcactgtatttgcatgttctccttgtgttcgggtgggtttcctccgggtgctctggtttcttccacaatccaaagacatgcattaacggtgtattgaataaactaagttggctgtagtgtgtaAGTGGGAgggtgaatgagagtatatgggtgtttcccagtactgggttgcggctggaatggcatccgctgtgtaaaacctgtgcttgataagttggcagtttattccgctgtggccacccctgagaaatcagggactaagccgaaggaaaataaattattaaatgaataattattagaattattattttttaaccattCTTTTATAGGACAGTATAGTGGAGACAGGAAAGGTTGTGTGAGTATAGAGTGAGcagaaggatcagcaaaggacctcgagctgggaatcgaactcgggtcacagTGAGCACTTCGGTGCTATATATCGACGCATTAACAACTAGGCCATCAGCACAGATAAATGCGCATTTTCGATTACTTCTTGGCCGACCTCTGACTTCACGTATGTAGGCACGAGCCGA

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0034660 ncRNA metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053074 lncRNA downstream 49293 37581522 ~ 37584807 (-) True XLOC_026625
TCONS_00051861 lncRNA downstream 490219 37136418 ~ 37143881 (-) True XLOC_026622
TCONS_00053073 lncRNA downstream 661878 36969403 ~ 36972222 (-) True XLOC_026619
TCONS_00053072 lncRNA downstream 680012 36953625 ~ 36954088 (-) True XLOC_026617
TCONS_00052478 lncRNA downstream 1023076 36610334 ~ 36611024 (-) True XLOC_026609
TCONS_00051872 lncRNA upstream 19902 37669163 ~ 37670175 (-) False XLOC_026627
TCONS_00051874 lncRNA upstream 28895 37678156 ~ 37699982 (-) True XLOC_026627
TCONS_00053076 lncRNA upstream 108202 37757463 ~ 37759934 (-) False XLOC_026628
TCONS_00051882 lncRNA upstream 122416 37771677 ~ 37773728 (-) True XLOC_026629
TCONS_00051884 lncRNA upstream 128580 37777841 ~ 37785840 (-) True XLOC_026630
TCONS_00051867 mRNA downstream 45245 37563945 ~ 37588855 (-) True XLOC_026624
TCONS_00051866 mRNA downstream 48237 37560340 ~ 37585863 (-) False XLOC_026624
TCONS_00051865 mRNA downstream 62499 37558491 ~ 37571601 (-) False XLOC_026624
TCONS_00051862 mRNA downstream 157625 37235924 ~ 37476475 (-) False XLOC_026623
TCONS_00051864 mRNA downstream 157822 37239967 ~ 37476278 (-) True XLOC_026623
TCONS_00051870 mRNA upstream 13183 37662444 ~ 37699992 (-) False XLOC_026627
TCONS_00051871 mRNA upstream 15670 37664931 ~ 37681824 (-) False XLOC_026627
TCONS_00051875 mRNA upstream 108124 37757385 ~ 37759969 (-) False XLOC_026628
TCONS_00051876 mRNA upstream 108132 37757393 ~ 37759147 (-) False XLOC_026628
TCONS_00051877 mRNA upstream 108519 37757780 ~ 37759996 (-) False XLOC_026628
TCONS_00051859 other downstream 558287 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051856 other downstream 666107 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051846 other downstream 877951 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051819 other downstream 1387305 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051818 other downstream 1387378 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051873 other upstream 24387 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051881 other upstream 118024 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051892 other upstream 1264117 38913378 ~ 38918717 (-) False XLOC_026635
TCONS_00051900 other upstream 1588835 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051909 other upstream 2000184 39649445 ~ 39649562 (-) True XLOC_026651

Expression Profile

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