RNA id: XM_036959831.1


Basic Information

Item Value
RNA id XM_036959831.1
length 4702
RNA type mRNA
GC content 0.45
exon number 19
gene id LOC110502444
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 21144640 ~ 21285931 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taggGCTAAAACCACTACTATTTTCTCCCCTCCGTCTCTGTCGCTCCagtatctccctttccctttgaGTTTACGAGATCTCCTCCCGAAACCTGAGCGAGGCAGTCACGGAAAAGAGAGGCGATTACCCTCCTGCACAACATGGCTGCAATTGTAACCTCGACCAGATTTACAGACGAATATCAGCTGTACGAAGAGCTCGGAAAGGGTGCCTTCTCCGTTGTCCGGCGATGCGTTAAAAAGTCCAATGGCCAGGAATTTGCTGCTAAAATTATCAACACAAAAAAACTATCAGCAAGAGaTCATCAAAAACTGGAACGAGAGGCCCGCATCTGTCGCCTGCTCAAACACCCCAACATAGtacGACTACACGAAAGTATCTCAGAGGAAGGCTTCCATTACCTGGTATTTGATCTTGTTACCGGTGGAGAGCTGTTTGAAGACATTGTTGCCAGAGAGTATTACAGTGAGGCTGATGCCagCCAGTGCATCAATCAGATCCTGGAGAGTGTCCACCACATGCACCAGCATGACATTGTGCACAGGGACCTCAAGCCAGAGAACCTGCTCCTGGCCAGTAAGCTGAAAGGAGCCGCGGTGAAGTTGGCTGACTTTGGGCTGGCCATCGAGGTGCAGGGAGATGAGCAGGCGTGGTTTGGTTTTGCAGGCACTCCGGGCTACCTCTCTCCAGAGGTCTTGAGGAAGGACCCCTACGGCAAGCCGGTGGATATCTGGGCATGTGGTGTGGTCCTGTACATTCTCCTGGTGGGCTACCCTCCCTTCTGGGATGAGGACCAGCACAAGCTCTATCAGCAGATCAAGGCTGGGGCCTACGATtttcCCTCCCCTGAGTGGGACACAGTGACCCCCGAAGCCAAGAACCTGATTAACCAGATGCTGACTATCAACCCTACCAAGAGGATCACTGCTGACCAGGCCCTCAAGCACCCATGGGTTTGCcAACGCTCCACTGTGGCTTCCATGATGCATCGTCAAGAGACCGTGGAGTGCCTGCGCAAGTTCAACGCCAGGAGAAAACTCAAGGGAGCCATCCTCACCACCATGCTGGTGACCAGAAACTTCTCAGCATGCAAAAGTTTACTAAACAAAAAATCGGATGGTGGAGTGAAGGGCTCCACAGAGAGCTGTAACACCACAGAAGAGGAAGATGTGAAAAGTAGAAAAGTGTCTGCGTGCGGGTCTAGCGCGGACAGCGCAATGGTCAGCCAGTGCAGTGCCAGTGAGGAACAGAGCCAGCCCCCTCACTGCCCACCCACCTCTCGCAAACAAGAGATCATCAAGATTACCGAGCAGCTGATTGAGGCCATCAACAATGGAGACTTTGAGGCTTACACGAGAATCTGTGACCCCGGGCTCACCTCGTTTGAACCCGAGGCTTTGGGAAACCTGGTGGAGGGCATGGACTTCCACAAATTCTACTTTGAGAACTTGTTGAGTAAGAACAGTAAGCCGGTCCACACCACCATCTTGAATCCCCATGTGCACCTGATCGGGGAAGACGCGGCCTGCATCGCCTACATCCGCCTGACCCAGTACATTGACAGCCAGGGACGACCGCGCTCCTGCCAGTCAGAAGAGACCCGCGTGTGGCACCGCCGCGACGCCAAGTGGCTCAATGTGCATTTTCACTGTTCAGGAGCGCCTGCCGCACCTCTCCAGTGACCCTTTACCAGACACAGcTTTGCCTGAATTCTGAAGACGATTGGAACATTTCCTCTCAGTGGTTGGATTGGCGCCTGGAGCCTGGCCGGAAGAGACCGCTTGAAGTTTACAATCCTTGGGgaggggaaaataaaaataaaatatatttaaaagccAACCGACAACACCACAACCACTCCAGTCCAACCCTAGCTTGATGTTGGGGGCCGGCTGGGGCCCGAGGCCCTCCCCTCAGGACAGTGCATGCTTCTGACGCCCATGGGGGGCGCGCGGTCTTGTTCTTTTTCCATGGATCCATATTTTTTGCCCTTTGTTTGGAAAGGTGTTTAAAGTATTAACATATGTACAAAAAATATGAAATTATTAAAAAAAAGTCACATTAATCAACAATGATTAAATATGAATTTTCTATATAAAAAAGGAGCACACACCCTAATATTAGTGGTGGTggtttttgtgttttgtttcacaATGAATCTAgttgttttctttctttttctggATGCAAACAAATGCTAGGAGGAAAAATGTAAGAAAGAAACTAAATGATTATACTTAGTATTAGAATTAAGAACACCAAAGTGTAGACTTTAGGCCTCTTTAGGCATTTAAATACATTGTTTTAATGTAGATGTATGTTTTTATGGGTTAGGCGGGTTTCAGAAGGGACAGTGTTTTAGTATTCATGTGTTATTGTGGAACTCTTAATTTGTATCCCCTGAATGCTttatttgaaagtattttgtgTTTGAATAATTTTTAAATGGGGGACTTTATTTAATATAGTAATGTATACATAGATATTTATAAGGAGAAAGGGAAAAGACTCTTTACTTTCAGAGTTTGGAGAAtggatgtgtgtgagagtgaatgTGTGTTCTCCTGTCCCTATTCAGCCTCTTTTTCAGTTTGAGATCCCCTGTGTACACACAAGGCCCAAACTCCAGGCCCCTGTGCTGTGCCCTTTGGGTCTATAAACCAGCCTGCTCCTCCAGCTTCAGCCACAATCTCCTGACCAACACAACCTGAAGTTGCAGAACACTACCATTGGTTTTCAGTGCTGAGTTGTGCCCTCTAGAGGTCCAAAGGAAGATGGCAATGACACAATCAGTCAAGCCAACTGATACTATTCTGACAGAGGCCCCAATCTACAAACTCTGAAAGCTCGGATACCTCTCCCTTGTATGTTTTCCTACTATGATTTTagcatgtttttttggggggggggggggggtctaaaatGGCCTGTACTGTTTTGCACATAAATTTGAGACTCAATGCTGTTCTGTTCACTCCCCAGGTGAATGTTTCTGCAACTTCAGGTTAAGCTCGCCCACTCCTGGGGTCTCTACCTGTGTTTCTATAGCGAGCGACCCTGCTAATCAGCTGTCTAGCTTTTAGTGCCATTCAGTGTGACGATGTCACCCTTTGCCTGTCTCGTTTTGATCCCCGTCCTGTTCTCTAACGTACATCGTCTTTTTTGCTTGCCGTACCTCTTTAAAAGCATGTGAAAATGAGAATGCAGTAAAGTGGGGTGCTGAGTTGACCCGTGGCATGTCAGATCTCTGGCTGGGCCTAAGATTGGATGGGACGGTGGAGGCTGGGTGCTTGGGAGCCACGGTGAAAGCAATCAATGGATTGGTCCCTTTGTCACGGTTTCTGTTGTAACGGTTCTAGATGTTAGTGTTCTTACGAGTGATCTAAGTTTTCTTTTGAGATTGGAGCTGAAATATGGGGAGGCAGTTGAGGTGAGGGATGGGGCTCAGGCTGCTAGCAAATCACATCCTGTCCAACCCCGCACACACATGCAGAAAATGCCACAATAGACATGGaatcaacacacgcacacacggtgTACTCCCAATGCAAatgatatttaaatatatatggCCAGACACACTAAATAAACCCTCGAAACAGTCTCACTTAAAAACATATCTTTGTGTTGATGGTAAAACATTGGAACGCTGTTTTTCACTGTGTTGTAGAAACTTGTGTGTGGCTTTGTGGGGTGAAGCTTGCCGTTTACCCCTTCACTTCTGTGCTAAGCAGCTCCATAGTACTCGTGTTCCATTGAACCTGTCAAAGGCCGGGTACCAAAAAGCTAAAAAAAAACAACCTACCGATGATATCAAAAAATGTTGAAGGAAACATGTTAAAACAAAACTTGTGCTCTGTTTTTATCATGAATCACATGTAGCCCCACCGTGTGCTGCTGGGTGTTGTGACATATCTGCAATGCCACGAGACTGTATTCCCCTTTGCACCATGATGCGATGTATACAGTACTGAACTATGTGATGTTTTTTTGGATCCGAGTAGTTTTCCTGACTTTGCGCTGTGGGCATTGACCTCTCTCCCCCACCGGGCCTGATGCTTCCATTCAGTGTGTGTTCACACAGCCATGTGAAAGAGTATAACCATCCAGTTTATTTCAATTCTTTAAAATAATTcaaagggaagaagagagaaatAGTAGTTACTGAGGGAAGGACAGTTCACCTTTGATTATACTATACCTTACTGGCCAGCAGGATAGGGAGAGAGTTGATATACAAAAGAAAAAGaataatgaaaaataaatattaaaagcCAGATTttaataacaaaaatatatatgcagTTTTACAAGAGGAAAAATATGCATGTCTTCTTTCTGGTAATATTATTTACTGTCTGTGTTTACTTAAGAAATGGAAATCTATATATGTTACTTGCACCTTCAAAGTCAATGAAAATGGCTCTGTCTCAAATATTGAAATGAAGTGATGTATcacgtaaaaaaaaaactacaaaaaaaGCCTTCGCTTGGTATGTTTCCCTTTATTTGTAAATGTACTGCGTTGTAACCATATAGTAAGGGGATGCATATGACTATACTCTGAGCTGGAGTTTTGCATGACCATACAATAAAGaaaatcattactttaaaacTATCAAGTGTTTGTTTGAATGTTAGCAGATCATATCTTTGTTATTTAAACAAGAAACATCGAATAAAAATAACATTTCAACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2108890 lncRNA downstream 32222 21112208 ~ 21112418 (-) True G1841823
TU2108886 lncRNA downstream 36537 21107896 ~ 21108103 (-) True G1841819
TU2108878 lncRNA downstream 48356 21095858 ~ 21096284 (-) True G1841811
TU2108870 lncRNA downstream 59569 21084851 ~ 21085071 (-) True G1841803
TU2108860 lncRNA downstream 71628 21072806 ~ 21073012 (-) True G1841793
TU2109008 lncRNA upstream 16069 21301999 ~ 21601932 (-) True G1841929
TU2109045 lncRNA upstream 68751 21354681 ~ 21382261 (-) True G1841964
TU2109092 lncRNA upstream 141532 21427462 ~ 21427887 (-) True G1842008
TU2109123 lncRNA upstream 175026 21460956 ~ 21462159 (-) True G1842039
TU2109247 lncRNA upstream 362316 21648246 ~ 21651632 (-) False G1842145
XM_036960267.1 mRNA downstream 295021 20832501 ~ 20849619 (-) True LOC110502440
XM_021580462.2 mRNA downstream 329495 20810137 ~ 20815145 (-) False si:dkey-191g9.7
XM_021580463.2 mRNA downstream 329495 20810137 ~ 20815145 (-) True si:dkey-191g9.7
XM_036959798.1 mRNA downstream 343169 20796170 ~ 20801471 (-) True polr1c
XM_021580460.2 mRNA downstream 343294 20796170 ~ 20801346 (-) False polr1c
LOC110502445 mRNA upstream 12664 21298594 ~ 21304431 (-) True LOC110502445
XM_021580471.2 mRNA upstream 227041 21512971 ~ 21516875 (-) True LOC110502447
XM_021580473.2 mRNA upstream 237804 21523734 ~ 21527540 (-) False LOC110502449
XM_021580472.2 mRNA upstream 237804 21523734 ~ 21528655 (-) True LOC110502449
XM_036959835.1 mRNA upstream 274070 21560000 ~ 21604318 (-) False LOC110502450
TU2108760 other downstream 201025 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 1759598 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 1846896 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 2023297 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2105357 other downstream 2290468 18849697 ~ 18854172 (-) True LOC110502394
TU2109040 other upstream 59584 21345514 ~ 21371799 (-) True G1841959
TU2111150 other upstream 1897057 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 1929555 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 2059161 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 4153877 25439807 ~ 25440387 (-) True G1846858

Expression Profile