RNA id: XM_036959835.1


Basic Information

Item Value
RNA id XM_036959835.1
length 5696
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110502450
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 21560000 ~ 21604318 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AtggaaatatatttttgttttttcaggGGGGTGGGGTTCTGTCCCAGAAACTGGAGAGTCCATACAGCAGCATGCAATGATTGACAACAGGGGTCTGGTCACAGACCAGCATCTGAGCAAGAGTGTGGATGTGTGTGATGAAGTCAGAGAATGTTTATACAGCCCTAGACATGACTGTCAGATCAAAGCTAGTCTGGGTAGGGCCTGAGCTGCAGGTGTTTGTCTGGGtttccccccaaaaaagtaaAACTACCCTTTCACCTTTTAACCCCAAACAGTAGCCACTAGCAGTTAAATTAAATAGGCAGGTCTGAGACTGAAGTAGTCTCCTACAGTTACAATATAATACATCTATGTAGACTGAGGGACTGTAGTCCTTTCAGATAGACACAGTGATGATGTTTCATTCTCATGCCTGCTCTCTCTGGGCTGGAGAGCTGGCATTTAATTTATAAGCATTGTGTATGTACAAAATATGCCCCAAAACATGCTTAGACCATGCACACACACGTTTTCTAGTGGTTGCGATCTTGCATTGCAAGAAGGCAAAAGTAGCCTAGTAGTAGCCTTATGCAAATTGTAAATATGATACCTCTTATTCATAACCAAAGAACAGGTAGGCCTAGCTAAATATAATAACAAGTTGCAATCATTTGCCATTAGTGAGAAGAACGAAAATGTATTTATCTTTGcattcaaaaaataataattctgggACATATTGTGTTGACCTTGGCTTTACTGGAATATACTAACTACTAGACAGTACTGGAGTGTAGCCTACAGGACTGAGAATGACATTCTGTTTTCTCCCCCACAGAGACAGGCACGACAAAGGACAGGAGGATAGCATGTCCATCAGCTCACTCATTGAACGCAGCGAGGAGAAGAAAGGGAGCTTCTTCAAGCTGATCGACTCGTTTGTCTGGGAGATCAGGACTCTGAAGAAGGAGATGGTGCAAAAGGCTGAGCAAGCAGAGGGAGATCCAGAGCCTGTAATACTACAGGGgCTAGATGGGCAGGTGGGAGGTCTGTTCCTACCTCCCTGTGTTGGTGTGCGGGCAGGGCTTGCTGGAGTTAGGGATTCAGGCAACGACTCTTTGCGTAGGATGAGTGTGCTGGACAGGCTGGTGCAAACGCACGCTGTGTGGCTGCAGCTGGGACTGAGCCGGGCAGAAGCCACACGCAAACTGCAACCACAGCCCACTGGGACGTTTCTGGTGAGAAAGTCGACTACCCTGCGGAGGAAGGTGATCTCTCTGCGGATGCACCAGGACTCTGAGACACCCGTCAAAGATTTCCCTGTGAAGGAGTGTCAATGCACATTCTCCTTGGAGAGATCAGGCCTCAGCTTTGCAGACCTGTTTCATCTTGTGGCTTTCTGCTGCATcagcagGGATGTCTTGCCATTCACTCTAAAGCTTCCTGAAGCCATCTCTGCAGCCAGGACGCCAACAGACTTGGAGGTGGCCAAGCTAGGAGCAGggTTCTGGGACTCTGAGCGTTGCCGCAGGAGGAGTTCTCTCTCCTCGTTGTCCAGGACAACCACCCACGATCAATCACCTAGCCTGAGGCAGAGATCCGTTTACACTCCCCTGGTCACCCGCACCCCGTCCCAGCTGGAATGTTCCCAGTCCAACGGGGCTCTCTGCTTCATCAACCCCCTCTTCCTAAAGGTTCACCATCCAGAGGGTGGCAACCACACCTTTCCCTCCTACACCAGCCACAACGACAACACCCAGCACCTAAACAATAGCAGTACAACTACAGCTACAACTGTACAAGTACAACAGCACTGTACCAGCAACCCAGAGCAACTTAAAGACAGCCCTCAACCCCATAGCGACAGCCCTCAGAGTGATAGCCCTGGCAATAGCACCCAGCATCATAACAGCTGTGGCAGCGTGAGCCGGGCTAACAGAGTTtccctcccaccacctcctcGCCCCCCACCTCCCTGCTGTGCCCCCCGTTGTCCTGCCTCACCTCAACGCCAGCGCAGCATGCCTGAGAAGATATCCTGGATCAATCCCCCcaaagagaaggagaaggtggcagagagggagaagggcagTAGCCTTCTCTCCCGCCTGGGCTCCACTCTCAGCATCAGCCCTTCctcatctttcctctcctcctctttcctctcctcctcccctcccaagAAGCGCAGCATCAGTGCCCCCATCTCtatccccctgtccctctcctccccaagTGACGTCGACTGCCGTCTTGTTCTCGATGACCAGACTATTGAGAACGCCATATCTCTCAGTCTGGCTAAGCGGGCACTGAGAAACGCCACCACCCCCGATGAAAACACAGAGGGAAACAGTCCGTCCACTCAAGACCAAGCCCTCTCCTGCCGAGAGGAAGGAGGCGGAAGAGGAAGAGGCGGAAGAGAAGAGGACTGCATCCAGCGCCTGAGCGACATGAGTATTTCCACCGACTCCACTGACTCAGTAGACTTCTCCCAGGGCTTCTTCCCCCCAATCGCTGAACCCAGCCCACCCACCACCAATAACCTGGTGCTGCCCCTCACCCACCCCTACAGCAGCATGGAGGAAGACGATGATGAAGACGAAGCAGACTTTGGCGTGAGTGTGGAGAACGACCAAGACCAGGACCTGACCATCACCCCTCCCGGGCTGCGCACCAAACGACGAGCCAGTGCCGGAGCCATGGTCATCCAGCAGGCCCTCAGGGGCCACTTCCGTAAGATGAGTGGGGTGTTCAGCTCTCTCCTAACCCCTGAGAAACGGGCCATACGGAGAGTCCTGGAGCTGTCCAGGGATAAGGGCTCGTACTTTGGATGCCTAGTGCAGGACTACTTGAGCTTCTTGCAGGAGGGAGGGGGCTGCCAGGCCTGGCAGTGCCACGCCTCAGGGCTGGAGCTGCTGCAGACGCTACGCCAGTTCATCACCCAGATGAAGAGCTACCTGCGGCAGAGCTCTGAGCTGGAGCCCCCCATCGAGTCACTCATCCCAGAGGACCAAATTgACTATGTCCTAGAAAAAGCCATGCATAAGATAGTCCTGAAGCCCCTGAAAGGTGTGGTGGGGGTGGCCCTCCAGGAGTTCCAGGTCCGCAGCGGGGCGTGGCAGGAGCTCAAGGAGAACCTCTCATTGGCCAAGGCCCGGCAGCCTCATGAGATGGGCGTGGCCAACGCCTTCCCTCCGGATCCAGTTAACATAGAGAAAATCCGGCACAAGTTCCACACCATGTGTAAACTCTATTCACCTGAGAAGAAGGTGACCATGCTGTTGCGCGTATGTAAACTCATCTATACCATCATGGAGCACAAGTCAGgttgTCTGTATGGGGCAGATGACTTCCTGCCCATGCTGACCTATGTGTTGGCCCAGTGTGACATGCCTCAACTAGACAACGAGATCCTCTACATGATGGAGGTTCTGGATCCTTCTCTGCTGCATGGAGAAGGTGGATACTACCTGACCAGTGCCTATGGAGCCATGTCCCTCATTAGGAACTTCCAAGAGGAGCAAGCAGCTCGTGTACTCAGCTCTGAAACACGCAACACACTCCGCCAGTGGCACTGTCGCCGCACCACCCAGCGCAGTGCGCCCTCCGTCAATGACTTCcagAACTACCTGCGGGTAGCGCTCCAGGACAGCGGTTGCACTGCCAAAACTCTGCAGGTGCAGCCCTATGCCACGACTGAGGAAATCTGCCAGATCTGCGCCTACAAGTTTAAAGTTCCCGACCCTGAGAATTATGCCCTAATTCTGCTCACTGAGGGCTCATGCCAGCAGCTAGCCCCCGACACACACCCCCAGAAGATCAAAGCTGAGCTCCACAGTCAACCCCAGGCCGCACCTTTTCACTTCGTCTTCTGTCGGGTGGCTAACCTCAATGACCTGGCCGCGACCTCGTTTGAACCCCAGTCCAACCTCAATGACATCCCACTTACCAAAGAATCTGAGCCCAACCTAATGGTGTGGCCTTGACCCCTTCTGACCCCCAGCCTAACCTCAACCTGGGTcacagtcccagtctcagcctcaGTCTACCCCCCAACCAGCACAATGGTAACTCCATATCCATCTGAGACTACAGGGCTGGAGAGTTGAAACCCCCAACAAAACTGGGCTGAACTGTGTTTAACTGGTCTGAGCTAGGCTGAACTGGGCCTAACCGGGTTAAGCGTCATGCTGAGCTTAGCCCCAAAAAACTTCCCCTTTTTGGTGATTCGTCTGTCTTGCAGGGAATCCTCACTGTAAAGCTTTGTCTGAGtacaagaggaaaggagaggaagagggaaggaaaTGCGACAGATGGGGTTATTTTGCAGCTCTATTTGTGAACTTTTGGGACATGGCACACGAGGAGCACACGTGAGGACAAACACAACTCTCATAAAATATGGATAAAGGTTTTGAAATAGTCTTGttacagacagccagacagttcAATTCCAAAAGTGTCAAAGTGCAGATTCAGGGTCAGTTTTTGGTTTGTCACTCCTAGTGGTGAAGCATAGGATTAAGTAAAGGGAAAGCTGATCTCAGATCGGTGGATAGGGTTCACTTTTATCTGCTTTGGTTCCCATCTAGTGATGTACTCGTTCAGTCCATTAACTTTTTCTTCAGACCGAAAATGTTCCTTTTCAGGCAGAAAAGAGCCTCCAAGTCTTTACAGAAAATATACAGGAATTATTTTATCTGGGTGATACTTCTATAATGAATTACTTGTTGCAGTTGCTGGTAAACTGCATTGTGTTTTTCTAGAATTGTTATGTTATAGCATTGCTTTTCTTTGTTAAAGTAAAATGTTAGGAGCAGGCATGTCTGCCAGTGATGAAATGATGAACTTAATGTTTTTATGATTATCCAGGAGATATGATACTGTACTTCCCTCATAGCTAATACTTAGTTAATCGAGGTCATCCCTCCCGTAATAATTGGTGTGATCATAAGATATGTGATTGACTGGCTTGGTCTACGGTACCAGCGTCAAATCGTCGACAAGGTCATGAAATATTGTACTACTGACAAATATTAAAAGTAGGCCTAAGTTGCCTTGTGAAATTGAGTGTGTTGATTCTCAAACTGGTCTAAGATTCTGCGCGCACACACAaacgtatgtgtgtgttttgactCTTGACTGGTAAGATTTTTAGCGTTGGGTATGAGAGGGTGCAGATTTAAAAGATGgaaagagaagggaaaggagTAAGAAGAGAAGTTGAACTGAATCATTAATGAAATAGTCTCTGTTCTTTAACTTAACACAGATAATGTTAACAAATTGTATCAGTTCTTTAATGTTTACATTATGAAATGTAAACAGGGGCATTGCTGGAGAGATTACCAAAAAGTGAAATGGGGAAATGTGCTTGAGAGAAGGTTGAGTAGCCAGAGCATGGTTGTTAAGCAGTAGCATTATTGTTAGAAAAGCTATGTAGCTTATGTTAGTTCAAATATATTAAACTATTTGGACTTTTTATAATAGATGTGTACTGTAATACAATTGCTACTCTAACAAGATATTTTAAATGATACAAATGTTAGTATTTATATGTATCGGTGCTGGGATTTTTCACATGTCTTTTTTCCCATGTCTGTCGTATTGCAGTTGTCCCAGATCAACAAGACATGTCCTTATGTTCCTATGCTGTCTGCTTCATTGAATGATATTATTTTGCACTCAATACATTTGTCATGACTAATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2109123 lncRNA downstream 97841 21460956 ~ 21462159 (-) True G1842039
TU2109092 lncRNA downstream 132113 21427462 ~ 21427887 (-) True G1842008
TU2109045 lncRNA downstream 177739 21354681 ~ 21382261 (-) True G1841964
TU2108985 lncRNA downstream 231714 21260825 ~ 21328286 (-) True G1841909
TU2108890 lncRNA downstream 447582 21112208 ~ 21112418 (-) True G1841823
TU2109247 lncRNA upstream 43928 21648246 ~ 21651632 (-) False G1842145
TU2109248 lncRNA upstream 43928 21648246 ~ 21651632 (-) False G1842145
TU2109249 lncRNA upstream 43928 21648246 ~ 21651632 (-) True G1842145
TU2109282 lncRNA upstream 81763 21686081 ~ 21686343 (-) True G1842169
TU2109283 lncRNA upstream 84978 21689296 ~ 21689536 (-) True G1842170
XM_021580472.2 mRNA downstream 31345 21523734 ~ 21528655 (-) True LOC110502449
XM_021580473.2 mRNA downstream 32460 21523734 ~ 21527540 (-) False LOC110502449
XM_021580471.2 mRNA downstream 43125 21512971 ~ 21516875 (-) True LOC110502447
LOC110502445 mRNA downstream 255569 21298594 ~ 21304431 (-) True LOC110502445
XM_036959830.1 mRNA downstream 274069 21144640 ~ 21285931 (-) False LOC110502444
XM_036960401.1 mRNA upstream 56140 21660458 ~ 21663289 (-) True LOC118943877
XM_021580477.2 mRNA upstream 73882 21678200 ~ 21822311 (-) True LOC110502452
XM_036959945.1 mRNA upstream 1211939 22816257 ~ 22870825 (-) False LOC110502455
XM_036959943.1 mRNA upstream 1275469 22879787 ~ 22887082 (-) False LOC110503091
XM_036959942.1 mRNA upstream 1275469 22879787 ~ 22897158 (-) False LOC110503091
TU2109040 other downstream 188201 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 616385 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 2174958 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 2262256 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 2438657 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2111150 other upstream 1578669 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 1611167 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 1740773 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 3835489 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 6470607 28074925 ~ 28078251 (-) True G1850441

Expression Profile