RNA id: XM_036960401.1


Basic Information

Item Value
RNA id XM_036960401.1
length 1369
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC118943877
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 21660458 ~ 21663289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGGCTGTGGACTGCTCGATAACCACTTCCGCTTTTTTTCCACGCAGGTCAACATTTGCGTTTACCTAgaaagacagtaaagacattgtAGAAAGGTTTTTGTTGGTTAAAACTCACGTTTAGGAGATCGACAGGTTGAGATATTTATGGAGCATAATAATGGAGATACTTCTAGCTGGTCGATGCAGCGACGAATGGAAGGTTTGGTCAACAAACACATGGCAGACATAGCACTAGAAACGCTCCAACAGAGACTATCAGCTGTGTCCGACGAAATGAACCATCTTGCGGAACATGTCTCGAGACGCTCGGAGGATGTTCCCAAGTATGATATTCCAAGACGCACAGATGTAAACTTTGACGTTGAGTCACTGAGTGCAACATTTAGCACGGGTGGTGTTGGGGAAAAGTTGGCGATCCCCGGCACCTCATCATCAGCAGAGACGGCTGCCCAGCGTAAAATCATCTCCCTGCTGGTGGAGATTAAGGAGGAGCAGCAGAGACAGTGGGGCGTTTTGAGGCAGATGCAGGCCAGGGTTCAGGGCCAGAGCTTTCCGGTggtagaggaagaggtggaggctCTAGACATTGACATCCCACTGAGGACCATGGAGCAGCTAGATGACACAGAGAGGCACCTGGAGGATGCAGGAGCACAGAAGAGAATGGTGTCTCACCTGTCACGAATGGGTGGGGCCACGTTTGATGATGCGGTGCGAAGGCTCATGCAGGCAGTGCTATCTTTTGCTGTGGGCTCTGAGCTCAACTGGGTGGGCCGAGGCCAGAAAAGGAGCTTCAGAAACACCCGCCTCCAAGGGGTTCTCTTCTGTGCTCTGAAAAGAACCCCAGTGGGCAAAGAGGCCACACATCACCAGTTTGCAGACGTGGTGAAGAAGTGGCTGCGGTTCGCCCCAttcagacagggagggagtggtCGACGGCATTATAAACCACCTGTTGACTTCCTGTGTCCAAAGGAATGTGTAGATCTGCCTACACATCAGCCTACACATCCACAGTAACTCACAATCAGCTTATTACATATATTATATTGTTTAACATTTTAGTATTTTTTTCCTAAGTTTGTTACATTGCAAAAAATAAATGCTATTTGAATGTGAATACATGTGGTTTGGCCCATGTTACTTCATACAGGGCCAAACCTGTGATCTGCTCAAGTAACTTGGACCCCTGCATAAATCATGCAACGATGTAAATCACGtgccaaactcattccacggagggtaGAGTGTCTGCGtgttttcactcctcccttgtacttgattgatgaattaaggtcactaattagtaaataACTTCAGTCACCTGGTTTTCTAGGTATTAATTGAAAATAAATCataaaaacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2109247 lncRNA downstream 8826 21648246 ~ 21651632 (-) False G1842145
TU2109248 lncRNA downstream 8826 21648246 ~ 21651632 (-) False G1842145
TU2109249 lncRNA downstream 8826 21648246 ~ 21651632 (-) True G1842145
TU2109008 lncRNA downstream 58526 21301999 ~ 21601932 (-) True G1841929
TU2109123 lncRNA downstream 198299 21460956 ~ 21462159 (-) True G1842039
TU2109282 lncRNA upstream 22792 21686081 ~ 21686343 (-) True G1842169
TU2109283 lncRNA upstream 26007 21689296 ~ 21689536 (-) True G1842170
TU2109375 lncRNA upstream 150361 21813650 ~ 21816666 (-) True G1842257
TU2109538 lncRNA upstream 367168 22030457 ~ 22030728 (-) True G1842419
TU2109560 lncRNA upstream 387733 22051022 ~ 22051511 (-) True G1842441
XM_036959835.1 mRNA downstream 56140 21560000 ~ 21604318 (-) False LOC110502450
XM_036959836.1 mRNA downstream 58693 21561657 ~ 21601765 (-) True LOC110502450
XM_021580472.2 mRNA downstream 131803 21523734 ~ 21528655 (-) True LOC110502449
XM_021580473.2 mRNA downstream 132918 21523734 ~ 21527540 (-) False LOC110502449
XM_021580471.2 mRNA downstream 143583 21512971 ~ 21516875 (-) True LOC110502447
XM_021580477.2 mRNA upstream 14911 21678200 ~ 21822311 (-) True LOC110502452
XM_036959945.1 mRNA upstream 1152968 22816257 ~ 22870825 (-) False LOC110502455
XM_036959943.1 mRNA upstream 1216498 22879787 ~ 22887082 (-) False LOC110503091
XM_036959942.1 mRNA upstream 1216498 22879787 ~ 22897158 (-) False LOC110503091
XM_036959941.1 mRNA upstream 1216498 22879787 ~ 22905295 (-) False LOC110503091
TU2109040 other downstream 288659 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 716843 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 2275416 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 2362714 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 2539115 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2111150 other upstream 1519698 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 1552196 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 1681802 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 3776518 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 6411636 28074925 ~ 28078251 (-) True G1850441

Expression Profile