RNA id: XM_021580477.2


Basic Information

Item Value
RNA id XM_021580477.2
length 5609
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC110502452
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 21678200 ~ 21822311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctcatacacaaacacactcacccctctacatcctcctTTCCGCGCTCTCTCTTGTACATCGCCAGCCTTGTTGCAGACTGTGTCCGGCGAAAACTGGCACAGAACTGACGCATCCATGGAGCGCTCCGTCCTATCACAACATCCACGACGCACAGCAACACTTCCGTGCGAAGTAATATAGAAGACAACATCGCAACCGACTCAAGATAGAATACCAACATCGTCTTTCACGCGCCGACAACCCACCTCTTCCATTGTCTAACTTTCCGAACCCCTCTTCCTCCCCGCTTCCTCCGACTCCTCCGCGTTCCCTGTCCGGGTTCCCAGAAACTCTGTCCCCGTGAAAACGTCTCCATGAATGGGATAGCCTTTGGCATGATGCCCGGGACCGTCCGGGTGCGGAGTAAGCCGCTTCAAGGGATGCTGAACCAGCGGAAGACCAAAGCTCAGCGGAAAAAGCGAAAGGAGTTGTTCGGTGGGCAGATGTTCTTCATGGGGGTGCTGCTCGCTCTTGTAAAGGGGCTCTCATGTTTGGTCGAGAAAGCAGGTTATGACATCTCCAGCCTTACTACTGAGGAGGGTGCCAGATGGGAGAGTCGGAGGCTACTACAGGAGTCCTGGGACAACGAGACAGACCTTCTGTTGGACCCCCCGTCCAAAAACTGCACTGAGCCAGcgtTACATGAGTTCCCCACAGACCTGTTCACCAACCAGGAGCGCACAGAGGGAGCGGTGGCCCTACACGTCCTGTTTGCCATGTACATGTTCTATGCACTGGCTCTGGTGTGTGACGACTACTTTGTTCCCTCTCTGGAGAAGATATGCGAGcgtCTACATCTTAGTGAGGATGTGGCAGGTGCAACCTTCATGGCAGCCGGCAGTTCAGCTCCTGAACTCTTCACCTCTGTTATCGGTGTGTTCATCACTAAAGGTGATGTGGGGGTGGGCACGATCGTGGGCTCAGCGGTCTTCAATATCCTCTGCATCATTGGAGTGTGTGGAATATTTGCTGGCCAGgcagtGCATCTGTCTCGTTGGTCTCTTATGAGAGACTCTATGTACTACACCCTATCCATCACTGCTCTTATCGTGTTCATATATGATGAAAAGGTTTCATGGTGGGAGTCTCTGACACTGGTTCTGATGTATTTCGGCTATATTTTGATAATGAAGTTTAACTCGAACATTGTGCATTTCCTGGAGAGGCGGAAGAAGAACTCGTCCAGCCTGGGGAACGGCACAGCCAGTAACGCTGACCTGGATGACAACTGTGATGCCAGCGCTGTCCTGCTGAAGAAAACTAACTTCCACAGAAAGCAGTCAGTGTTGATGGTAGATGAGTTGCTGTCAGCCTACCCCCACCAGCTGTCCTTCTCTGAAGCCGGCATGAGGATCATGATCACCAGCCACTTCTCCCCTCGCACACGCCTCTCCATGGCCTCACGCATGCTCATCACTGAGAGACAGCGTCTGATTAGTACCCGGCCGTTCACTAACGGAGACTCAGAGGTCACAGTGAAGGTCGGCAGTAGACGGGGCCTGGAGAACGGACTGGGCGGGCCTGAAAGGGGAGTCAAAGGTCGCCGTGGTCACCATGGAGAGGACGACAGGGGAGATGTGGAGGCCGGCAACGAGACTGAAAACGAGAACGAAGACAATGAGAATAATGAGaacgatgaagaggaggaggacgtaGGGGAGGGACCTTTTGTGCCCTTTCACGTCCCAGctGGGTGCTGTAATAAGATCAAGTGGCTGTTGGCCTGGCCTCTGTGCCTGCTGTTGTTCTTCACGGTGCCTAACTGTGCCAACACTCGCTGGGAGAGATGGTTCATGGTCTCCTTCGTCACTTCCACCCTCTGGATTGCTGGTTTTTCCTATGTCATGGTCTGGATGGTGACAGTGATCGGATTTACTCTCGGTATCCCCGACGTCATCATGGGCATCACCTTCCTGGCAGCTGGCACCAGTGTCCCTGATTGCATGGCCAGTCTTATAGTGGCACGGCAAGGTTTTGGGGACATGGCTGTGTCTAACTCTATAGGCAGCAATGTGTTTGATATCCTTATTGGACTGGGCCTTCCCTGGGCCCTGCAGACTCTTGCCATCAACTACGGCTCCTACATTAAACTGAACAGCAAAGGGCTCATCTTCTCTGTGGGACTTCTGTTGGGGTCTGTGTTCCTCACAGTCCTGGGGGTACATCTGAATGGGTGGAAACTGGACCGTCGTTTGGGCCTGGTGTGTCTGCTCATGTACTGCATCTTTCTCTGCTTCTCCATCCTCATTGAGTACAACGTCTTCACCTTTGTCAACCTGCCCACCTGCAGAGACCGCTGAGACCCAGTTGTcactctcccttctctttctcctccccatcctcctccactctccaggAAATGGTCCGGCTTGGGAGGGATCTGTCTGCACCTCagatatttgtattattattattttctttatGGTCAGTGCAATagggagtagtgtgtgtgtgtgtgtggtttaaagATGAGATAAACTGGGCACACATGCAGGAGCACAAACTGACTTGTAAAAAGCTTTCACACAGGACGTGTGAACAAAGCTTTTTTTGTCGACTATTGCCTACTTTGATGTGAAGATTTTTATTTGTTTAGGACTTTTGTAAAGGTGTCTGAAACTGCATTATAGTCTACCGTGTGATTTTGCTGACAATTTCTAATGTAATGTTTATTAGCTGCTAACTGGCTTTGATGAAAGCCGGTCTTATACGAGTCTATAATGTGTACTGGAATAGTGTTGTTTGAACAATGTTAATGTTTCCCGCTTTGTAAGTACATGCAGGCAGATATtctatttattaatttattgaatgttatttattttaaatccAAACCAACCCGGTTGGTCTTGAAGATGAGCTAATTTTGGAGATACTGTCTGTAGAGAGTAGTGACACCAACAACCCCTTGGCATGTTATGAGACTCCAGTCTAAAGTCACTTTTAGGGGAAACAACCTTTCAACATTCCTTTGACTCTTGCAAAAGAGGAATCTCTACTAAAAGTATTCTGAGCATTTACTCTATGACGGACATGATTTAGATCGTCACACGAAGAAAATGCATCCTTAGCAAAGTCAAACCTATTCAGTGAGACTGCACTGAAGTATATCATATGTGGTGTCTGTCCAAGGTGGGAGACGGTCTCTGTTTCAATGACAATGAGTGTCCCTACTTGCTGATTATTATGGCAATCTGGTCAAATGAAGCAAACTTTGTGAAACTGTAAACTCCTTTTTTCCACAAATGGAGCTCAAGAGAATGATATGTGCTGCCACATAGGGGCACAACCATGAACTACAGCACAGTATTGGATTCTTACAGACATTTTCTTGTTCCAAGTAACTTTTTACCAAATGTACATTGCCTAGATGGACTTCCTGTATAAAGGATGGATTTCCTGTTCCACCGACACACAGAGGAAATTAGGCATTTCTGTACTAATGAGTACTCCCAGTGTTATGATTCATAAAGGTAGagatgcactttaaataaagcaTCTGAACTTTGGCTGACCTGATGTTGGTTGAGCTGCGGTAATTCATTTTTTGTAATGCACAATGTTTAGATTTGTCCAGATGGTAGATTGTGCTACATTTAAATCAGTTCTTATGTCCTTTACGCCTTTAGTTTTGGGGATTATATCAGACGTAATCTGTAGACATGCAGGGGATTCTAGGACACTTGTTCAAGGCAAGCCAACCAGTCGTGCGTTGATTGAATGTTTGCTATGTTAGTAACACCATCgcacctttatttcacctttacaaaatatatttatcaCACCACTGTAAACACACAGCAGACTAAGGGCTCCATTCAATCCGCATCGCAGAAGTTCAGTTTTAAAGCgggattgaaatttaaaggcaatggtcCCGCTTTAGCAGAGTTTACATTAACGGTAAACGCTGCGTATAGTCGACTCAATCGGGAATTACTTTTACATTTCTGTTGCGAATCTGTAACGCTCCAGttttacagattgaatagagccctaaaacCATCTGTAAAAACTAAGATTTTTCATCTGgtagttttttttcttcataaatGCAAATAACACACATTTAttggatgaaaaaaaaaaaattgctttacAAACTGCTCTGAATGACATCTTGTGAACACTCATTTTATGGACCAATAACACAATATCTCAAATACGTAAAtgatgattaaaaaaaaagtCTCAATGTACAAAGTATTAGGGTTgcatttattttgaagaatgtttatcgtttgtttttttgttcataTATTTATTTGTCTTGGGAAATGTGTAGAGACGGAGCACAACTCTAATGTCAAAGGAAAACAGggtttttaaaatgtaaaatcaTTTATAATGCAATAATGATGAGCTTTACAATGTAAATATGTTGTTTCTTTTCATTTGATTGAAGGCACATTTCTAGATGGTATGTACAGTTGCACATCCCTCTGTCAAGAGAGTAAAATGTATCTTGTAGGGCAGACTAAAGCTAAGTGGTTTACAGAAGTCTGCACTGGAAGCTTGATATGAAAAGTTACTTATCTACATATCTACCAAGCCTATAAGTCAAAGACTCCTAACTAGTTCTAATTGGCCAATATCATACAAATATCCCCATGCAGCATTCAATACATTAAGTTGAAAAGATATCTTCAGTGGCACATCTAACTGAAATGTTAACCAGTGACATATTCATCCTTAGCCATAATACCATTGACAAATATGGTCAgatgtcatgttgtgctgctgttcATTTATCCCTGGTTTTGATGAGGATTATAATCTGAAAACAGGTACTAtacaacacaggaggttggtggcaccttcattggggaggcAGGGTTCGTtttaatggctggagcagaattggTGGAATGATATCACAtatcaaacatggtttccatgtgtttgatgccattccatttgagCCATTCcgaccattattatgagctgtttctcccccccccccccccccccaacttctATACCACCATGTGCTTGAAATTCACCAAACTATCACCAAGACTCATATCTGCAGGTGAGCGGTCTTGAAGAAAGGAATATTTTaatattttgtgaagttcacatGGTGATATATTGCTGatgtacatatatacatacatgtaaatgtatttatatattttgtcttAATCTGTATATTTGTTCCATATATTTTCATAGATATGATCTTAGGTCCCCCTTGGTACCCTCCTTAGtcctttgttttgttgtgttTGAGATTTTGATATCACCTTGTCCTTTGTTAACTTGCATGGATAtattttaatataatacattatttaATGGTAATTCTAATGTAATTTGAATCAGAATGATACATATTAAAGATGGCACTAAACTTGGCTGTTGAACTGGACCTCCTAGATGACTGCATGTTGTTTCTGATAGGATTGCTAAGTTTGATGATGTAATGTTAATCAAATAACCTGAAGTATGCCTCCGGAACAGGGAGATCAAAACAGAATGGTTTACTTTGTGTGCCGATGTTTCAGACGTAATTTAGAATACTTTTGGTACTTCCGCATAAATAAAGTATATTTGCTTAAGGTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13751 SLC24A3, NCKX3; solute carrier family 24 (sodium/potassium/calcium exchanger), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2109247 lncRNA downstream 26568 21648246 ~ 21651632 (-) False G1842145
TU2109248 lncRNA downstream 26568 21648246 ~ 21651632 (-) False G1842145
TU2109249 lncRNA downstream 26568 21648246 ~ 21651632 (-) True G1842145
TU2109123 lncRNA downstream 216041 21460956 ~ 21462159 (-) True G1842039
TU2109092 lncRNA downstream 250313 21427462 ~ 21427887 (-) True G1842008
TU2109538 lncRNA upstream 208146 22030457 ~ 22030728 (-) True G1842419
TU2109560 lncRNA upstream 228711 22051022 ~ 22051511 (-) True G1842441
TU2109571 lncRNA upstream 238107 22060418 ~ 22060673 (-) True G1842451
TU2109578 lncRNA upstream 243786 22066097 ~ 22066393 (-) True G1842458
TU2109582 lncRNA upstream 250780 22073091 ~ 22073341 (-) True G1842462
XM_036960401.1 mRNA downstream 14911 21660458 ~ 21663289 (-) True LOC118943877
XM_036959835.1 mRNA downstream 73882 21560000 ~ 21604318 (-) False LOC110502450
XM_036959836.1 mRNA downstream 76435 21561657 ~ 21601765 (-) True LOC110502450
XM_021580472.2 mRNA downstream 149545 21523734 ~ 21528655 (-) True LOC110502449
XM_021580473.2 mRNA downstream 150660 21523734 ~ 21527540 (-) False LOC110502449
XM_036959945.1 mRNA upstream 993946 22816257 ~ 22870825 (-) False LOC110502455
XM_036959943.1 mRNA upstream 1057476 22879787 ~ 22887082 (-) False LOC110503091
XM_036959942.1 mRNA upstream 1057476 22879787 ~ 22897158 (-) False LOC110503091
XM_036959941.1 mRNA upstream 1057476 22879787 ~ 22905295 (-) False LOC110503091
XM_036959940.1 mRNA upstream 1057476 22879787 ~ 22916320 (-) False LOC110503091
TU2109040 other downstream 306401 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 734585 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 2293158 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 2380456 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 2556857 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2111150 other upstream 1360676 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 1393174 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 1522780 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 3617496 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 6252614 28074925 ~ 28078251 (-) True G1850441

Expression Profile