RNA id: XM_036959941.1


Basic Information

Item Value
RNA id XM_036959941.1
length 4047
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110503091
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 22879787 ~ 22950292 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacaggatccgcttcgggaaagtcatattcctggtcgtactgatgCCGAAAGAGGCtcgcgggagagggagaggcagcagAGGGTTCCCCACGCCACCACTCTGGAGGTGCCGGAGCAGCAGAGGACACCCCAGCATCGCTCTCGATCTGTCTCCCCTCACAGAGAGGAACAGGGCAGGGGCCGATCACGACCCACCAACGTCCCCACCCAGAGGAGTTTGGATGATGAGATCCACCATAGTAGGAGGTCTAGTTCTCCCACCAGCTACTACGACTCTGCCGGAGGACACTACCAGGAGCAGGACTATGTAGATGACagTGAGGTCATCTTGATCCACCAATCAATGCGGGGCAAAAGTGCAGAGTGCCTACACACTAAAAGTGATCTACAGCCTTCTCTTGACAGGGTTAAGACTAGGAGCGCTAGCACCAACTGTCTGAACCCAGAAAGGAACCATAGTGTTCCTTCACCAGAGCCCAAAAGCTGCTCCCAGTCTCTGCCCCGCAGACGCCCCGCCAGCCCCAGGATTCTAATCCAACACGCCTCCCCAGAAGACGACAGCAGATGGATGATGGAGCGTCTAGTTCCTAGACAAGAGACAGTAAACCACCTCAGTGCAaagaagagGCAAACTCGGACCCTGGACTCATCAACCTGTCACACTCTAGGAAAGAAGCTCCCTGGCAGAGACAGgggccCCCTCCAAGGTGGtgcgtctctctcctcctcagtgacGTCCTCGTCAGCAGTTCGCAGGGTCAGACACCTCCCACAGGTCCCCGACAAGAGTAGCAGCCCCGTAGAACAAGctctaGCAGCGGAGGAACGTGTTCGTCAGCTCCAGATGAAGGTGCAGAAGAGGGATTCCTACAGTTCTGCTGCTCCCTCCAGTTCCGGCAGGGACCTGGAGAGGGCGCTTAAGAGCAAACGCGAGctgtATAAGGACCAGAGGAGAACCAGCTGTGAGAATGTATCCCGCAAGTCTTCAGACAGTGATGTCAGCGACGTGTCAGCCATCTCTCGCACCAGCAGTGCCTCCCGCATCAGTAGTACCAGCTACATGTCCATCCAGTCAGAGAGACCCCGGGGACGCTTCAAcAAGGCGGTCCGTGCGTCAGGCCAGAGCATGTTGAAGAGCACCAGCGTGAGCGGTGAGATCTATGGCATTGAGCACACAGACGGCAGCCAATCAGATACAGCATTGGGCGGGGGCAAGAAGCGGCGCTCCAGCCTCAGCCAACGGGTGGTGGCCATCGTGGGCCTGCCCTCCAGACGCAGCTGCAGCACCTCACAGCTCACCTCCCAGAAAGAAGCAGTGGGGGTGGATACCAAGAAGAAGGGCAAGAAAAAGAACAGAATCCAGATCCAGCGGAGTACAGAGGTGGGTATGGCTGTAGAGTACCCCCGCCAGGCCAGCAGAGACTCCACCGACGGCAGCATGAACAGCTACAGCTCTGAGGGGAATCTAATCTTCTCGGGGATGAGGCTGGGGGCTGACAGTCAGTTTAGTGATTTCCTGGACGGCCTTGGCCCCGCCCAACTGGTGGGCCGGCAAACATTAGCCACACCTGCCATGGGAGATGTTCAAATTGGAATGATGGATAAAAAAGGCCAGCTGGAGGTAGAGGTGATCAGGGCACGTGGCCTTAACCCCAAACCAGGGTCCAGATCACTCCCAGCTCCCTATGTCAAGGTGTACCTGCTGGATAACGGGGCCTGTAAAGCCAAAAAGAAAACCAAGATTGCACGTAAAACCCTGGAGCCACTCTACCAGCAGGCCCTGCTGTTTGAAGAGAGCCCACAGGGGAAGATCCTCCAGGTAATAGTCTGGGGCGACTACGGGCGACTGGACCACAAATGCTTCATGGGAGTTGCACAGATCCTATTGGAGGAACTGGACCTCTCTAGCACAGTGATTGGCTGGTACAAACTGTTTCCCCCTTCCTCGTTGGTGGACCCTACATTAGCCTCGCTCACACGGCGGGCATCCCAAACATCCCTGGACAGCTCAGGACCAGCTAATATGCGCTCTTAGTGACCGCAACGCAACCACAACCCCAAATGGACCACAAATGACCAGAGTGCATGACCACATACCTAGGGCCAATTTCCCTTAGGGCAATAGAGCAaatcagacagagagaaaaagagataaatagagagagagagaaaggaaggaaaggagatAGAGAACTAGCCAATCAGAGCTTACCTGGATTCTGACAATCACTTCCcatgcctccctcccttcccttttcccacCTTTCTCTGGCCTGCTGGGGCCTTACTCCTGAGTCTCACCTCTTGTATTTGTCCTCCTCTCTGACATCTCCTTTCTTTGTCTCCTCTTtgtccattcctcctctcccaccgTTGAGTGTGTTATGGCACGTGCTCCTGAGATAGAAGGGACTCGTGCAGCCCATTATGTTAGGTGGCACAAGGGATGTCAGCCCAGGCTTGGTGAAGCCAATCAGTGAAGAGGTTATTGTGAGGCCATAAAGAGCGTGCAGGAGACAAAGAGAAAAGATTGATGATGCCCAGCCGACAGTTGCCCATCAAAATGTGTTTCAGCATTGATGCCGTCATGGCGTCACTACAGGTGTCTGTGAGGGTTGGCATGGTTGCACAATCTGTTAGGGAAGGGAGTCTGCACAGGTGGAAAAAACACTTGTCCGAAGATCAAAGCAAGCACAAAAGCTTGATAATTTTTTTGGACACGGATTGAttatgaaagagaaagaaaaacaaaGGCCAAATTATGGTTAGATATATTTTATTCTATTTGCCTAGAGTTCAGAAAGGTACCATGTGGTGCAGActccctgtgtgtgtatttggtttTCGAGTGACGGTGGTCTGCAGACCTGCAGAGGTCTTGTCACACCCCCCTCTCGTCCCGCCCCCGCGAGCGAGGCAGGCGCAGCATGACTCGGGACCCCGACCCAAGCTGcatgcacattttttttgtaaaacaAAAGCCAGAcaaattactttaaaaaaaaaagagactaAATGTGTGTTAGTTCCACATACTTTAGGCCAGCTTGTATGTTGCATGTACTTGTACAGTTTGCTCGTACTGAATATGAATACAAACAGAAAAGCCATCCGCCATCCAAGGGCGGACACCGGGGGAATAAGCTCCGCCCAGGCCACACCTCCAACTCTGGGTACGAATTTCCATATTAGGAAGTCTCCAAAAgccttttttattttcttttgttCCTTTTGAACCCTTTGGAGAGCAGTGCTGTATCATAGTACTGAGCAAACTGGAACCCCCTAGTTATCTGAGGATCTAGGTGCTTTAACAGTAGTCTATGACAGTGGGGCTAGAAACAGAGGTAGAGAATGTGTGTATAAAAAAACAGAGCTTAATGTATATGAAGTAAAATTATGACTTGACAGAAATGATAAAGATATAGATATATGATTATCAAATGAGTGTATCTGACTACACGCATTACCTATGCGCACACACACGTTGTAAATATGAGTCAAGGGGAGAAGTTTGacaatatttacacacacacacacacacacacacacacacacacacacacaaaccgatCCAAACATTCCTGGTCCTATGGAAACAGATCAGAGCCCCATGCCCTGTGTTGCGAGAGACGCTGAGCGGTGCCCAACCACAAGAGGGAGCCAACAGGCCTTTCAGTTTCTCGAAATAGCAGCCAACACCAACATGACTATTTGCAACACACTCCATCTTGTTTCTTTAACCGCAACACTTTAATCCCCCTATTTTCTCATGGTTTGGACTGAACTTTAAAGCCAATGAAAATGTTGTTTGCTGACCTCTCAGTTGAACCTCTTGCGGTGCGGCCCACTGCCCTTTCCTTTGTCAGTATTACTCCATGATACTGATTGTTTACAGTCCATGGGTACCCCCTCAACACACCATATCTAGGGAAGAAGTATTCACTGCTACATTTCTTGTTTGTATAACAGATGTGGCTCTACCGATGTGTATGTTTTATATTCGAGAGTTCATTTTTATTATTTACAAATAAAAGACTGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2110782 lncRNA downstream 60488 22816266 ~ 22819299 (-) True LOC110502455
TU2110812 lncRNA downstream 65167 22814410 ~ 22814620 (-) True G1843633
TU2110579 lncRNA downstream 84538 22794929 ~ 22795249 (-) True G1843431
TU2110539 lncRNA downstream 110915 22768607 ~ 22768872 (-) True G1843395
TU2110521 lncRNA downstream 127774 22751789 ~ 22752013 (-) True G1843377
TU2110899 lncRNA upstream 54855 22960150 ~ 22960446 (-) True G1843718
TU2110900 lncRNA upstream 56587 22961882 ~ 22962152 (-) True G1843719
TU2110903 lncRNA upstream 58253 22963548 ~ 22964556 (-) True G1843722
TU2110904 lncRNA upstream 60377 22965672 ~ 22966113 (-) True G1843723
TU2110937 lncRNA upstream 111945 23017240 ~ 23017453 (-) True G1843746
XM_036959945.1 mRNA downstream 8962 22816257 ~ 22870825 (-) False LOC110502455
XM_021580477.2 mRNA downstream 1057476 21678200 ~ 21822311 (-) True LOC110502452
XM_036960401.1 mRNA downstream 1216498 21660458 ~ 21663289 (-) True LOC118943877
XM_036959835.1 mRNA downstream 1275469 21560000 ~ 21604318 (-) False LOC110502450
XM_021580481.2 mRNA upstream 93944 22999239 ~ 23006480 (-) True LOC110502457
XM_021580487.2 mRNA upstream 308610 23213905 ~ 23218749 (-) False LOC110502461
XM_021580488.2 mRNA upstream 439058 23344353 ~ 23358461 (-) False LOC110502462
XM_021580489.2 mRNA upstream 439058 23344353 ~ 23358461 (-) False LOC110502462
NM_001124363.1 mRNA upstream 470849 23376144 ~ 23384221 (-) False LOC100136042
TU2109040 other downstream 1507988 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 1936172 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 3494745 19378572 ~ 19385042 (-) True LOC110502408
TU2106048 other downstream 3582043 19285396 ~ 19297744 (-) False LOC110502408
TU2105797 other downstream 3758444 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2111150 other upstream 277692 23182987 ~ 23233423 (-) True G1843946
TU2111172 other upstream 310190 23215485 ~ 23218270 (-) True LOC110502461
TU2111672 other upstream 439796 23345091 ~ 23345771 (-) True LOC110502462
TU2114269 other upstream 2534512 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 5169630 28074925 ~ 28078251 (-) True G1850441

Expression Profile