RNA id: XM_021580489.2


Basic Information

Item Value
RNA id XM_021580489.2
length 3698
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110502462
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 23344353 ~ 23358461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATTCTCTGGAGTTTACTAGCCTACATTTGGCACATTAGTAACTGTATATGGCCTGTAACAAACTGCACAGCATGCTATCTCCACTTTGTCATGTGGTAAATCAAGGCCATGTTCGAAAATTCCCTCAAACAAAGACCTAGAAAAACGGTTGATTGGAAACAAAGGGTCTCCTTATAATGGTTTATTTGACACAGCAGTATTCTCCCTCGCCTGCCTTTTGTTTGGTTTTATTTTTTTGCTTGGTCATCATTGGCAGAGCGTTTGTAATGTCAGCCACAAAGGCTAACTAACTCTGGAAGGTCCCACGCGTGAGGCTTGCGTGGGAACAGGCCAGCGTGAGATTTTTGGGGGTCTATTTCGTAGGCGCCCAGGGCCAGGCAGCCTTTAGTCTAGAATGAGACAGCCGAGGGTGAGCACCGGAGTTTTCACACACTAAAGGTACCGCAGGGAAGAACGCACTCCGGGGATAACATCAACCGAGGCAGCGGGATAACGGCAACAACCACAATGTACAAGACCAGTTACCTGCGCGAGGTGCGCAAGGAGAAGTATGAGCGTTCTGATGTCTTCGAAGAGCCCTACGGCCCTGATGCATCGGCAGGCACCTCAGCCATCCAGGGCTGGGAGAGCCTGCAGGAGCTCAACAGCCGCTTCGCCCGCTATATTAATCGGGCACGCGTGCTGGAGCAGCGCAATTCCGTGTTCCGCAAGCAGCTAGAGACGCTGCAGCGGATGGAAGAGGCCAGTGGGCTTGAGGAGGCCTTTACTGAACAGATTGGCCTGAACCGGAGGCGCATCTGCGAGCTCTCTGCCGACCGTGCCAAACTTGAGCGCCAGCTGAAGGACGCATGCCGCATGCTGGACGAGTTCACCAACAAATACAGAAATGAGTGTGAGTATCAAGAACAGCTGCGGGGTACATTGGAACAACTCAACAGGGAGGCTGACCATAACCTGCTCAGGAACCTGGAGTTTCAGATCCAGACTCAGTTCCTTCAGGATGACATCAACTCCAccaaagacagacacagaaagAACCTGTCAGAGATCCAGACCTACGTGAATATCCTGCACCAGATCAACCAGACGATACACCTGGTGCCAAATATGACTGTGGGCACCTCTGAGGAGAAGCAGCTGGCCCAGAGGAGAGTTCCAGCCCTGCAGAGTCAGCTGGAGGAGTATAAGAGCGCCCTCTGTCAGCTCCAAGCACAGAAGCAGCATCTGCAGTACGAGaCGTCAGTGTTGGAGAGTTCCATCATGAGCACCCAGGAGGGCTATGACGATGAGATCCAGCAGTACAACGAGCAGATTGAGTCTCTGAGGAAGGACATTGAGGAAGCCGAGAGATCCCTGGACAAATACACAAATGAGTGCCGCCACCTGGCCATGTACCAGACCTCACTGGAGAATGAGCTGGAGAGGTACAAGAGGATCATCGAGAACGAGGACAACAGGTTGAATTCAGCAATAATTGGGACTCCCATTACCTTGTTCACCACCAATTACCGctacacccacacacccactgtGTCGAGCAGGGGCAGAGACATCACGCAAGCCATCCAGGACATCACCAGTATCAAGCCTCGCCAGAAGAACCTGGCCAAGAAGGTCCTGAAGAAGAAGGAGATCAGCCCCAAAGATGTGATGGACAGTGGCCAGGAGGAGAGAGTCGGTGGAGCTGAACACATGGAGGACGAGAAGCGAGGGGTGGCAGGGGAGGAAGGCGAGGTGAAGAGGGAGGAGCAGAGGTCCCTGTACACGCCCCAGGATGTGCCAGACGGGGCTCAGATCAGCAAAGCCTTCGACACGCTTTGTAACATTGTCAGAGACCGAATGAGGAAGTACAAGAAGCCAGAGCCAATTGCAGACTTTTACACCAAGGGGCGCTATGTGCTGGTGACAGGCGATGGCAGCTACCCCCACCCTCACTTCTACACCTCCAGCCCCTCCGCCGGACACGTCTTCGTCACCATCCGCAACGGCATGGTCTCCCCTTATGACCCCTTCGGGCCTTACACCCCCTCCCCCAACCCCCCTCATCCTCAGCCCATGCCACCCCCTGGTCCCCTTACCCCCACCCAGCCCTCTGACGGAGAGGGGGGGAAAGGAGACGATAAGGGAGGAAAAGGTGGTGGAAAGGGGAAATCTAGGGGCGGAGACCCCGAGCCTAGGCCGAAGAATCCTACTCCCCCCCCACAGCCCAACCCTGCCCCCAAAGGCCCCAGCAATCCCTCCGGACCCAAGGGGGGTAAAGACGACAGTCACCGCAGGGGCCCTCGTCCCATGCCCTGCCCCCGCGGCACTAGCAGCATGCCCCCTGACTCCATGAGCTACGAGAAGGTGGAGATGGTGGAGTCAGTGGAAAAGTTCTCCAATGACCGCAAGACCAAGGGCTATGAGGAGACAGCCATGGTGGTGGAGACCATGATCGAGAAGACCAGCAAAAAGAAGAACTGAGTCTGAGATAAGGTCGACCTTTGCCAAAATATCTCACAAGTTTTGCCTCAACTTATGCCAGTAAGAACAAACACTGAGCCATTATGTGACTCTGCTAAAGACACATTCTAAAGACATTGTTCCCACCCTATATGAAACCAACCTTAAAGAGACAGTTCTTCCTGATACTGCTCCTCTATTCGCTCACGCTTTCTGGCTTTGCGTTCAGCAAGTGTTAGCTGGTTCCATAATGCTGCTATTGTTGTTTTCTACCTACGCCGTAACCTTACACATTTACTGTCTGAAAACATGAAGTACGAACATCAAAACTACAAGCCCCCTTGTCATCTCAACCCCCAAAGTAGAGTAAACATGGCTTGATGTGTGAAAAAACCTCTAACATTTTTATAAATTGATGACATGCTACTGCCCTCATGGATGTTTGGCACCCTTCCAAACCAAAGCTGCCCCCAAACCCAAGAGCTCATTTGTTCAATTGGATGCCATCGACTGCCCTCAACACAGACTTTCTGTGTATAAAATTgctttaataataaaaaagaaTCAAGCTTTAAAAGCGCAAAGCTCTACTGTCTTTGTGTTTGGACATTAGCACCACTCTTATGACACACTCATAGCTTTGTTCCATTACAAATGAATGCCCCAATCCTTCATATCATCTCATTTCAATCCATTGAAATGTGCCAAAAAGATATTAAATGATTCATATTATATTCTTtgaataataacatgggatgtttCAGATTTTTACTTTTCGTATGCAGTTAAAGCATTATTGACTTACTTTATAATGATGGTAGAGGTGATGGATGCCTAGTTTTTAACTGATCGCCCTGTTTGACTTGCATACTAGAGGTATATTCATTGCGTCAGAGTGAGGAAACTAGACTGAGCTAGTGCAGTGTTTAGTAAACATTGGGTGTCTCTCAGCACGGAGTGATAGGTGCAGTTACTGAAGGAGAGTCATCCATTTTTCATTGAGATGAACAGGAGGAGCAGACAGCGACCTCTGAACTCTGCATAATCCACTTTCCCTTAGAGggacagacaagagagagagaaagagagagccagaaaacgtgtgtgtgtgtgtgtgacagaataACAAAAGTAAGAGATacggaagaagaaaaaaaagtaagAGTGGCAGAAGAAGATGCTGTTTTATACTGTATTCCCGGTCCTGATCTCACACCCAGTGTGTGATGTAAATGTCCCTGTGCTTTGTGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2111634 lncRNA downstream 22818 23298543 ~ 23321535 (-) True G1844420
TU2111215 lncRNA downstream 84132 23259901 ~ 23260221 (-) True G1844010
TU2111209 lncRNA downstream 89132 23254961 ~ 23255221 (-) True G1844004
TU2111196 lncRNA downstream 96668 23247416 ~ 23247685 (-) True G1843991
TU2111192 lncRNA downstream 99270 23244704 ~ 23245083 (-) True G1843988
TU2111686 lncRNA upstream 10515 23368976 ~ 23369455 (-) True G1844465
TU2111690 lncRNA upstream 13993 23372454 ~ 23372721 (-) True G1844469
TU2111691 lncRNA upstream 14339 23372800 ~ 23373004 (-) True G1844470
TU2111992 lncRNA upstream 398728 23757189 ~ 23759162 (-) True G1844764
TU2111983 lncRNA upstream 441547 23800008 ~ 23805468 (-) True G1844758
XM_021580487.2 mRNA downstream 125604 23213905 ~ 23218749 (-) False LOC110502461
XM_021580481.2 mRNA downstream 337873 22999239 ~ 23006480 (-) True LOC110502457
XM_036959937.1 mRNA downstream 394061 22879787 ~ 22950292 (-) False LOC110503091
NM_001124363.1 mRNA upstream 17683 23376144 ~ 23384221 (-) False LOC100136042
XR_005039090.1 mRNA upstream 18319 23376780 ~ 23384319 (-) True LOC100136042
XM_021580498.2 mRNA upstream 488595 23847056 ~ 23849143 (-) True LOC110502466
XM_021580500.2 mRNA upstream 509178 23867639 ~ 24024871 (-) False LOC110502467
XM_021580501.2 mRNA upstream 509178 23867639 ~ 24036992 (-) True LOC110502467
TU2111150 other downstream 110930 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 126083 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 1972554 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 2400738 20943307 ~ 20943615 (-) True G1841694
TU2106041 other downstream 3959311 19378572 ~ 19385042 (-) True LOC110502408
TU2114269 other upstream 2081346 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 4716464 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 5566278 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 7793148 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 7793148 31151609 ~ 31169977 (-) True LOC110502574

Expression Profile