RNA id: XM_021580498.2


Basic Information

Item Value
RNA id XM_021580498.2
length 1494
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110502466
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 23847056 ~ 23849143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTGTTGTGCGCTTGAAGGGGCGGGAATGCAAATAGATCTTCATGTATAAAGAGAACATCGCAGAGCCGTGCGTCAGGATACCTCAAAATACCCCACTAGCATACTCTTGAGACTGTGGTAGGATTCAAGACTTTGCGGACTTTTTGAAATACCCTACATTTGACgaattttttattcattttttaaattcataAAACCGATAATTTACTTAAAGAAGTATGCCTAATCTGCCAGTTGGTCGTTTTATGGCCATGTATCTCACGCTGTTTGGATACCTTGGGGATGCTTACGCTGGGGCTGTTTTACTGAACTCTAATGCCATCAAGAACTTGCCCGGTGTCACTGACACGGTTAGCCCGAGCCCACGTCCTTCTTCTTCTCGTAATGACGGACAGAAGGCAGTCGTGGACACTTTGCAGCCTACTTGCACATACAATGCTGAGTGTGGGGCCGATGAATTCTGCAACGATATCCGAGGCGCGTGTCTCCCATGCCGAAAGACCCGGAAGCGGTGCGCAAGAGATTCTATGTGCTGCGCCGGGAAGCGCTGCATCAATGGTGTTTGTCAGGCCAGTGATCAAGATGCTGAAACCGCAGTCACGACCAGTGTTGAAAATAGGCAGAACAACACCATGGAACACTATGGCAAGAGACTGCCTCTGCCGCAAGGTCAACATTCTGTAAAAGGTCGGGAAGGTGACAACTGCCTAAGGTCCTCCGACTGCTCTGAGGGTCTGTGCTGTGCACGTCACTTCTGGTCTCGTATCTGTaagccggtgctgatggagggcCAGGTGTGCACGCATCACCGTAGGAAAGGCGGCCATGGCCTGGAGCTTTTCCAGCGCTGCGACTGTGGAGATGGCCTCTCAtgcagactagagagaggagagaaagacaccGGAGTCAGCAGGACAGCAGTGCGGAACCTGCATACCTGCCAGAGACGCTGACACACATCCGGGACATTCACAATGCCTCAGATGCTGACACACAGTCTTGAACATACACACTTCCCACAACCGACACATATCTGACAGATGTCAGAGACGCTGACATGCACAGAACACATCCGGAAAGGAAAAATGGGTTCCGGAGAAAAGTGATGCGCCCAGAGGGATGCGATGGACCAATCCAATTCCCCCTGATGCTGGAGAATGCAAAATAAAGAAGTTGTCATTGGATGTGTATAGGAAAGATCGATACATGTCATCAAAAATGGCAGAGTTGTTTTGTTTCTTTTAATGAAACTTAACTTTGATTGCAGTAAATTACTGTATTGTAAATACTATACTGGAGGTGGCACTTAACTGAGAATTTGAATTCTGTCTACACCTGTATTATAAATAACTTGGTGCTGCATAGTTAATTTCCAATATTGTAAATGTGTACACAATGATTTATATTGTTATTTACTGtgtaatgtaaatgtatttttagTTTACTTGTAAAGTGTAAAGAAATTTGTTTAAATAAAACATTCTAATTACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2111983 lncRNA downstream 41588 23800008 ~ 23805468 (-) True G1844758
TU2111992 lncRNA downstream 87894 23757189 ~ 23759162 (-) True G1844764
TU2111691 lncRNA downstream 474052 23372800 ~ 23373004 (-) True G1844470
TU2111690 lncRNA downstream 474335 23372454 ~ 23372721 (-) True G1844469
TU2111686 lncRNA downstream 477601 23368976 ~ 23369455 (-) True G1844465
TU2112546 lncRNA upstream 11873 23861016 ~ 23861232 (-) True G1845275
TU2112547 lncRNA upstream 13171 23862314 ~ 23862672 (-) True G1845276
TU2112548 lncRNA upstream 13928 23863071 ~ 23863463 (-) True G1845277
TU2112549 lncRNA upstream 14522 23863665 ~ 23864014 (-) True G1845278
TU2112529 lncRNA upstream 15560 23864703 ~ 23865322 (-) True G1845261
XR_005039090.1 mRNA downstream 462737 23376780 ~ 23384319 (-) True LOC100136042
NM_001124363.1 mRNA downstream 462835 23376144 ~ 23384221 (-) False LOC100136042
XM_021580488.2 mRNA downstream 488595 23344353 ~ 23358461 (-) False LOC110502462
XM_021580489.2 mRNA downstream 488595 23344353 ~ 23358461 (-) False LOC110502462
XM_021580487.2 mRNA downstream 628307 23213905 ~ 23218749 (-) False LOC110502461
XM_021580500.2 mRNA upstream 18496 23867639 ~ 24024871 (-) False LOC110502467
XM_021580501.2 mRNA upstream 18496 23867639 ~ 24036992 (-) True LOC110502467
LOC110503092 mRNA upstream 209829 24058972 ~ 24072489 (-) True LOC110503092
XM_036960859.1 mRNA upstream 266672 24115815 ~ 24117680 (-) False LOC118943923
XM_036959636.1 mRNA upstream 325018 24174161 ~ 24183941 (-) False gsto1
TU2111672 other downstream 501285 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 613633 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 628786 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 2475257 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 2903441 20943307 ~ 20943615 (-) True G1841694
TU2114269 other upstream 1590664 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 4225782 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 5075596 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 7302466 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 7302466 31151609 ~ 31169977 (-) True LOC110502574

Expression Profile