RNA id: TCONS_00053076


Basic Information

Item Value
RNA id TCONS_00053076
length 2472
lncRNA type sense_over
GC content 0.33
exon number 1
gene id XLOC_026628
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 37757385 ~ 37759996 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccaaggttcactgcggttttccacaaggtaagtaaaaagtaaataaagacgatttgttgataaagcatgtactgtaaactagcgacgttatctaattacatcaagttcatttattaaaaacatatttttctcaaatataacgttggtcatgcatagctcagaacaatatatacattttaagatgaggaacagtgttaccagattgttgttttccacaatagaattcgtgcaaaatcttTATATGATATGCAgtatgcaactctaataatacaaatgtattcgtaattgtttcaatattaaagaacatcaagtgtttccaaaggttaattgtaaaaacaattattttccatgcctttaaaggaaaaaaggcagaaattttgcccgtctgagcacatttttaatttaatttaatttttatttttaatctaccacacacacacacacatgtatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacaggtgtaaattataaggtgttcactgttcagatatgaatattttttctttgctcttttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaAAAAGTAAAGCCACTTTACCCATGTCTATATGTTAAATTGAActtgtctctctctctatctctgttaacacatttgtatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTTATACTCATATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTccatgtatattaaatatctacATTGTTTAGGCATATATGATTGTACgagataaaatgcatttatttatgtatgtgttgaaactaaattaacaagaaaacagctctttGATGTTCACCTAGTAAAATTAGATTAGAAGATAATATTTTGAAGGTTTATTTACAGCTAAGGATTAAGGATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAAGCACATGAGTTTAAATCTGAGATAGATGAACTATATGATTATCTTAAACTGATCTACAGGTAAATGCCAAAACTTATTGGTTtacttatttgcttgtttgtttgtttgtttgtttgtttgtttgtttgtttttttgtatatgttaACCAGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTCTTGGGATGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAGTTTGGCCATCTTGCTGACCTATTGATATCAGAAGGTAACGATATCCACTAGTGTTTGTTTTAGTTGTTCTGTAACCTATTTAAATAGTATTGTGATTTTTGATTGCTTATCACTGTAGACCGAAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCACGAAACTGGCAGTGACCGGAAACCAGTTGGAAGACTTTGGTCTGTGACGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattaaatgtagtcatgaaaaattgtaagtgttactattattgtcatttttttcagtagcagaagcgaagacaacaaaaaacagaagtgatatggaTGTCTTCGTCATATGGCATGGTATGTACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATAGAactttctttttataaatatatttcagactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTAATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaagtatgtatttgtattatttggcacagacataagcataaggttacccagtccaaaggacattaatatatttttatgttgttgtgttcttttaagattcgacatgtggcctaaacgaagaggggttaaaaggtctatggatcatcattctcagaaagcaacaaaatatctgagaaataaacaacaatacgatGGTGCAATCTGGAGACCTGCAAGGTACCTGCAAGTTTTGGCTGGAGCAGAGAacatagattttttaaataaagctccagctgatgagtttgacattgactgtggattttcttttactgtaatccagaagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051874 lncRNA downstream 57481 37678156 ~ 37699982 (-) True XLOC_026627
TCONS_00051872 lncRNA downstream 87288 37669163 ~ 37670175 (-) False XLOC_026627
TCONS_00051868 lncRNA downstream 108074 37634100 ~ 37649389 (-) False XLOC_026626
TCONS_00053075 lncRNA downstream 108202 37634100 ~ 37649261 (-) False XLOC_026626
TCONS_00051869 lncRNA downstream 117605 37634686 ~ 37639858 (-) True XLOC_026626
TCONS_00051882 lncRNA upstream 11743 37771677 ~ 37773728 (-) True XLOC_026629
TCONS_00051884 lncRNA upstream 17907 37777841 ~ 37785840 (-) True XLOC_026630
TCONS_00051885 lncRNA upstream 766045 38525979 ~ 38529416 (-) True XLOC_026631
TCONS_00053077 lncRNA upstream 1211501 38971435 ~ 38973341 (-) False XLOC_026636
TCONS_00052479 lncRNA upstream 1211501 38971435 ~ 38975355 (-) False XLOC_026636
TCONS_00051870 mRNA downstream 57471 37662444 ~ 37699992 (-) False XLOC_026627
TCONS_00051871 mRNA downstream 75639 37664931 ~ 37681824 (-) False XLOC_026627
TCONS_00051867 mRNA downstream 168608 37563945 ~ 37588855 (-) True XLOC_026624
TCONS_00051866 mRNA downstream 171600 37560340 ~ 37585863 (-) False XLOC_026624
TCONS_00051865 mRNA downstream 185862 37558491 ~ 37571601 (-) False XLOC_026624
TCONS_00051880 mRNA upstream 6539 37766473 ~ 37773800 (-) False XLOC_026629
TCONS_00051883 mRNA upstream 16555 37776489 ~ 37785873 (-) False XLOC_026630
TCONS_00051886 mRNA upstream 888053 38647987 ~ 38692920 (-) False XLOC_026632
TCONS_00051887 mRNA upstream 890969 38650903 ~ 38683327 (-) True XLOC_026632
TCONS_00051888 mRNA upstream 945491 38705425 ~ 38745598 (-) True XLOC_026633
TCONS_00051873 other downstream 57512 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051859 other downstream 681650 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051856 other downstream 789470 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051846 other downstream 1001314 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051819 other downstream 1510668 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051881 other upstream 7351 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051892 other upstream 1153444 38913378 ~ 38918717 (-) False XLOC_026635
TCONS_00051900 other upstream 1478162 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051909 other upstream 1889511 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051914 other upstream 2197424 39957358 ~ 39957474 (-) True XLOC_026654

Expression Profile

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