RNA id: TU2112701


Basic Information

Item Value
RNA id TU2112701
length 3344
lncRNA type sense_over
GC content 0.43
exon number 2
gene id LOC118943923
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 24075852 ~ 24117680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctgggatcttttattttagctcatgaaacaacaatacatgttgcctttatatttttgttcagtgtagttgcaTGTGAGTTAGACCTCTATAAGGGTAGCCCAGTGTGGGACAAGATCAAGGGATCCAAGAGCTCATGTCTGTCATCAGTGGTGGTCCACACTGCATTGCAATTGGATGAGCTTTCATGTCATTCTACTCTCCCCCCTCCATGATGCAATTCACCCCAAAAAGACCAGTCACTCCACAGGATAACCTGAGCGCTTAATACATTGGAAAACGTGTTTCTGCAAGAAAAGACAACATTGCATTCATTTATTAGGGATGGACGCTAAATTCCAATACATGCACACTGCCACAGTCCTTTAAATGTATATAAAGTGTTGACATTGCAACGCTTGTCTCCCTGCTGTTTCGtgtattatattttttattttagaaaaaaagaaaaaaacattgaCAATTAAATGGGATGCCTTGTTCTGCATAATTTAAACATATACACAGTGGGAAAAGGAATGGCAATGCTTTAGACATTAGCCTCTTCATAACTCTACCACGCCCCCAACGCACCGCCTTCATGCAGCTTCAAAGGCCAAAAGTCCTCGTCGCGTGACAGCCTGCAAAGGGCACGAGAAGCATTCACAGTAAAGGAGGACGAGGGAAAAGgtgtgGGGGCGTGGGTAGGCGGAGGAAAAGTTGTGGGGGCGTGGtaggaggaggaaaaggtgtgggggcgtggataggaggaggaaaaggggagagagaagacaggaataGAAACAAAGTGACTGCAGCACTGGCCTTGGTTTTGACAGAAGGAGCGTAGTCCTGATTGTTACTCGTTTCCATCGTCTTTGACACAAAgtctgtttacacacacacacacacacacacacagcttaatttgtaaatcgggaggtgccggaacaaaaacagagagaggtgggCGACCTAGGGAGTTCATAGGTTCTGGAACGCATGAGAAAAAGTGCCATAGAGCAGAGGCACttacagaagttgcacacatggAGAGCATTTTTAGTAGCCTAGGGTCCTGGAAAAAAATTTGGCCTTtcataaacacatttcatgcaattctaagTAAATTTTACATGACTGCAGACTTTGGCATaatattttttaataccacacaaatgatAAAAATGGCAGGCTACTTGGACACCAacaaactgagaatctgagatcaataaaaacgacccTGCCTtaaatccatcaatagcctaggcctaggtgtgtggagaaacataatgtaggctacaatatgaggaAATAATAGTCCTAAAAATGATTTCCAGTGttactgactcacccaatgatgcacAGCTCACTCCCTGGTGATGGCTGAAGCGCTCAAGCCAAAAGCCTCTCTCCCTTTTACCttgtaaaacaatatttggaagttgatcaaatattttggtagcaTAAAGCATAGTCTCCTATTTTCACCatgagccatttgctttccaacttGTTTTCCCTCGATTGTACTTTAAATATTGTgaaaggcctgttttgtctgcattagtttttttcactgacagatttgctgCGCGTTCCCAACTGTAGGCTATTTcttgttattgggctacaatccacagctaggttattttttaaaataagctattgatcctctgtaGCTAAATAATAGGCCTTCTCGTGGTGTAGTAGGCTGTTCtgaattatttcatttatttctgaacagacagcagtgaTTATATAACTTTGGCAAAAATATTTAAATTCATCAAGGGTGCTGCAGTTGCTTCAGAACCCTTCGTAcgattctataaggaaataaatgatgaagtgcaACACTGGAGAGATGAGTTGCAGGCTCACATCTATcacagcagagagggagagagatcatatAAAGTTAACCTCATTGTAGTTATGTAAAAGACATTGGCCTGCTTCTCACGGAGCCACTGCCACGCGTTGGTCTCAAACATAGGTTACAATGTTGCACAAACCATAAACCCTGGCCGGCCCAAACCGAATCTACTCTTAGAATATTAGACCGGAGATGAAAATTTTATTTTTCACATTACATTGTTGGGGCAGGATAATTAACGAATTGGCAACTCGGGTGAACTTAGCGCTTTTGTTCGAATTTTAACATTGCAAAAATGTACAATTATTTGTCATGCAACTGAGAGTTACTGGATCTGGCCAAATATTTTCCGGAAACAAAATAGTCCAAAACAGAGTTGATCCAGCGCAAATTAAGCACTGcacacacaatatatacaaaagtatgtggacacactttcaaatgagtggattcggctatttcagcaacgcttgttgctgacaggtgtatgaaatAGAGCACATGGCCATGCAGTCgccagacaaacattggcataaGAATGGCCCTACTTTAGAGCTCAgcaactttcaacgtggcacagtcataggatgccacctttccaccaAGTCAGTTAGTAATtattttgccctgctagagctgcccctgtcaactgtaagtgctgttattgtgaagtggaaatgtctaggagcaacaaaggctcagccaTGAAATGGTAAGCCACACTAGCTCACAGAACatgaccgctgagtgctgaagcgtgtacaAGTCATCTGTCctgggttgcaacactcactacagagttccaaactgcctctggaagcaacatcagcagaagaactgttcgtcgggagaatcatgaaatgggtttccatggctgagcagccggacgcacacaagcctaagaataACCTGCGCAATGCCAAACGTTGGCTGGAGTGGGGTAAAGCGCagcaccattggactctggaacagtggaaacgcgttcaTCTGGCAGTCTGGcagacaaatctgtgtttggAGAATGCCAGGAGAACAGTAGCTGCCCCAATGCATATAGTGCCAACTTGTAAGTtctgtggaggaggaataatgttccttagttccagtgaagagaatattaatgctacagcatacaatgacattctagacgattctgtgcttccaactacatcgaacacctttggatgaattggaacggcgactgcgagccaggcctaatcgctcaacatcagtgcctaaccttactaatgctcgtggctgaatgaaagcaagtccctgcagcaatgttccaacatctagtagaaagccttcccagaagagtggaggctatattAGCAGGGGACCAAATGTatatgaatgcccatgattttggaatgagatgttcgatgagcacgtgtccacatacttttggtcatgtagtgagagacatacagtaccagtcaagttaggacacacctacttattcaaggtttttctttacttttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2112685 lncRNA downstream 70 24100792 ~ 24113117 (-) True G1845407
TU2112748 lncRNA downstream 13858 24099004 ~ 24099329 (-) True G1845445
TU2112530 lncRNA downstream 246324 23866275 ~ 23866863 (-) True G1845262
TU2112529 lncRNA downstream 247865 23864703 ~ 23865322 (-) True G1845261
TU2112549 lncRNA downstream 249173 23863665 ~ 23864014 (-) True G1845278
TU2112773 lncRNA upstream 9694 24126944 ~ 24132598 (-) False G1845461
TU2112770 lncRNA upstream 14283 24131533 ~ 24132598 (-) True G1845461
TU2112781 lncRNA upstream 23550 24140800 ~ 24141026 (-) True G1845469
TU2112783 lncRNA upstream 26203 24143453 ~ 24146931 (-) True G1845471
TU2112797 lncRNA upstream 34019 24151269 ~ 24178167 (-) True G1845481
LOC110503092 mRNA downstream 40698 24058972 ~ 24072489 (-) True LOC110503092
XM_021580501.2 mRNA downstream 76195 23867639 ~ 24036992 (-) True LOC110502467
XM_021580500.2 mRNA downstream 88316 23867639 ~ 24024871 (-) False LOC110502467
XM_021580498.2 mRNA downstream 264044 23847056 ~ 23849143 (-) True LOC110502466
XR_005039090.1 mRNA downstream 728868 23376780 ~ 23384319 (-) True LOC100136042
XM_036959636.1 mRNA upstream 56911 24174161 ~ 24183941 (-) False gsto1
NM_001160618.1 mRNA upstream 56912 24174162 ~ 24183876 (-) True gsto1
XM_021580511.2 mRNA upstream 175649 24292899 ~ 24360854 (-) False LOC110502475
XM_036960344.1 mRNA upstream 175649 24292899 ~ 24361215 (-) True LOC110502475
XM_021580517.2 mRNA upstream 403296 24520546 ~ 24630581 (-) False LOC110502477
TU2111672 other downstream 767416 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 879764 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 894917 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 2741388 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 3169572 20943307 ~ 20943615 (-) True G1841694
TU2114269 other upstream 1322557 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 3957675 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 4807489 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 7034359 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 7034359 31151609 ~ 31169977 (-) True LOC110502574

Expression Profile