RNA id: XM_021580527.2


Basic Information

Item Value
RNA id XM_021580527.2
length 1720
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC110502481
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 24754565 ~ 24766770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCGACACACTGGAGGCAATTTCCGAACGTACCCTATGAGTTACAGTCAGTTGACCTTTACAGTGAATTCGTTAGGATGTCGATTCAAATACCAATTGTCCATTTTAAGTACCAGGGACATAATTTATTGGGATAAAGCCCCATCTGCTGACAATGAGCGAAATTACACTTTGGCAGACTACTATCGCGAGAATAACATGTTATAAGAAATAATCGACATTTCCGGTTTATTTTTTAGATATTTATTTTTGCTGATTTATGAGAACCTATTTCAGTAAAATCTGAATATTCTTATTTATTCAGTTGAAACAAATACAGAAAGATGTCAGAGGATTTGTTGAAACAGTTGGGCAGCTACAAAGCACAGTTGCAACAAGTGGAAGCCGCCTTATCAACCGACCCTGAAAATGAAGACCTTCTCAAATTACAGAAAGACTTATCGGAAGTCATAGACTTAACAAAAGACCTCCTGACGTCGCAGCCCTCCGAAGGTACTGCTACTGCCAACAGCTCAGATGCAGCCCCCCTGAAACATAGGTGGAGCGTTGGGGACAGGTGTATGACTGTGTGGAGTCAGGATGGACAGGTGTATGAAGCTGAGATTGAGGAGATAGACGGCGAGAATGGCACGGCGGCCATCACCTTCTCCGGCTACGGGAACGCAGAGGTGGTGCCACTGCAGAACCTCAAGCCTGCCGAGGAGGGCAAGCACTCTGAGGATGACGGGAAATCCAAGTCCAGGAAGGAGCAGATAGCAGACCAGAGGGAGTACAAGAAGAAGAAGGCCCAGAAGAAGGTGCTGAGGATGAAGGAACTGGAACAGGAGCGAGAAGACCAGAAATCCAAGTGGCAGAGTTTTAACAACAAGGCCTATAACAAGAACAAGAAAGGACAGGTGAAGAGGAGTATATTTGCATCGCCGGAGAGTGTAAACGGCAAGGTGGGAGTAGGAACATGTGGCATAGCAGACAAACCCATGACCACGTATCACGACACATCCAAATATAACGTCAGGCATCTAATGCCACAGTGACCTAACATTTTATCTTTGTGTAAAAGTATCCTATTGTATAGTAGCAAGATCATTGCTTATCTTTGTGTGTTTATGGTTTGGGTTACCCCAGTAAAGGAGCTTTGAAACAAATTGCTTGCTCACCATTGGTTGCCTCATTGGGAAATTGTCCTTACCAGTATTATCACATAGAACAGCAGAATtcttaataaaataaataaccaCTGTAAATGGAGTTGCAGCACAAATAATGGTTGTGGTGAAATTAGTCTGGGTTGCTGTATCCTTCTGAATGCAACAAAGGCCAAAAAACTATTTCCATGTTTTTAATGTTACACATTTATTATAGATTTTTCAGGTTGAACTAGACTATAATATACATTTTTACGGTTTAGTGATAAGACCCTTTTTTAAAGCAAGTAATATAAAGCTAATTTTACATCTCAGTTTTGTACATTTACAGGGAAACAAATTGTTTTTTGTTTAGAGGTAAGATGTTCCTCTCATTTTTCCCTGAACCCTGAATTTTTCATATTGGTACTGAATGTTGTTTAACACAGTTCCTCCAGATGGCAGTAATGTATTTTATACCGTCTTTGTTCTGTGACGTATGTCAATGACCTTATGCCACTGCTGGTGATATAagctttttttaaaataaaatcagGGATGAGTTGTGGATTTTCCTATTAAACCTTCATGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2113351 lncRNA downstream 1721 24751032 ~ 24752844 (-) True G1845988
TU2113138 lncRNA downstream 131872 24614539 ~ 24622693 (-) True G1845784
TU2113095 lncRNA downstream 166831 24574323 ~ 24587734 (-) True LOC110502477
TU2112948 lncRNA downstream 350673 24394066 ~ 24403892 (-) True G1845627
TU2112819 lncRNA downstream 559313 24194755 ~ 24195252 (-) True G1845501
TU2113391 lncRNA upstream 52764 24819302 ~ 24820076 (-) True G1846027
TU2113410 lncRNA upstream 70060 24836598 ~ 24837151 (-) False G1846045
TU2113409 lncRNA upstream 70160 24836698 ~ 24837797 (-) True G1846045
TU2113496 lncRNA upstream 119192 24885730 ~ 24889515 (-) True G1846126
TU2113557 lncRNA upstream 182042 24948580 ~ 24948779 (-) True G1846180
XM_021580517.2 mRNA downstream 123984 24520546 ~ 24630581 (-) False LOC110502477
XM_036960344.1 mRNA downstream 393350 24292899 ~ 24361215 (-) True LOC110502475
XM_021580511.2 mRNA downstream 393711 24292899 ~ 24360854 (-) False LOC110502475
XM_036959636.1 mRNA downstream 570624 24174161 ~ 24183941 (-) False gsto1
XM_021580531.2 mRNA upstream 40435 24806973 ~ 24813358 (-) True LOC110502483
XR_005039146.1 mRNA upstream 73371 24839909 ~ 24846204 (-) True LOC118943844
NM_001124281.1 mRNA upstream 361073 25127611 ~ 25128951 (-) True gnrh1
XM_021580534.2 mRNA upstream 364718 25131256 ~ 25192325 (-) True LOC110502487
XR_002470430.2 mRNA upstream 650826 25417364 ~ 25418599 (-) True LOC110503059
TU2111672 other downstream 1408794 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 1521142 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 1536295 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 3382766 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 3810950 20943307 ~ 20943615 (-) True G1841694
TU2114269 other upstream 673269 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 3308387 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 4158201 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 6385071 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 6385071 31151609 ~ 31169977 (-) True LOC110502574

Expression Profile