RNA id: XM_021580534.2


Basic Information

Item Value
RNA id XM_021580534.2
length 3467
RNA type mRNA
GC content 0.45
exon number 21
gene id LOC110502487
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 25131256 ~ 25192325 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTTTAATTTCAATACGTAGGCGTGTTTACAGGAAAAACAGAGAATCAGAGAAAATTAATATCATGGAACGTTCAGCAGCTATCATCATTACGAATTGAGGGATGTAGATGATGCGCCGCTCTGCAGTAATGCTCACTCCTACCTGCCTGATGTAGATTCATGTAGAATATGCGCCCCGTGGGACGGACCAGGCCTACTTCGCTCATAGCGACTTTTGTACAACAGCATCATTGGCCGGGCAGCAAGATTAATATTTTCGTAAGAGGTTTGCGGCAAGGAAGATAGTCTTCGTTTTCATATCCACTTCTCATTAACACCAGCGAATAAAAACACAGTTTTTTTTCTCAGCCAATAAACCATATAATTCATCAAGACGCTGCGAGATCACATTTCCTACATCTCTACGGTGGTATGTGTTTATGGAGATCACTGAGCTCGAGACGACTTTTAAACCGTGTAATGACTTGAAACTTGGAAGTCCCCTGAAACCCAGCCCACTGGACCTTAGCTACAGGAACAAAGTGTGTCCTGATCACAACCAATACTTCCCCGGCCAGTCCCACCAGACCCTGCTCCTCTGAGACTATGTGAATGTGGACTGTGTTATGGGTACAGAACCCCAAGGGCCCAGTCAGGAAGAGAATCAGACTTTCAGGTTGCTATGGACTATTGGAACAACTCCTGAATCCTGTCAGCTCTGCTTGGAACTTCACAATGGTGTTGTTTCTGACTGCAACTATAATAACCTTGAATAACTCCTCTCATGAGAACCAGACTACAGAAAACCCCACCCCCCAGGGTGCCCATGTACTTTCCTACATGCTGGtcgtctctcttcttctcatcaTCATCGTTCTCCCGACAGTATACTTCCTAAGGTTTAGAAACCACAGGAAGGCTCTTGTCACCTCAGTTGATAAGAAGATTCCAAATGGCTTCTTGGAAGATCAAGgAGAGCAGACAGTGGTCCTCCTCCCACGCTCCCCATCTCCATCCAAGCGTTACTTCCCCATCCCCCTGGACTCGCTAGAAGACCAGTTCCGGATATGCTCGGCAGACGACTGCAAGCTTTTCAGAGAGGAGTTCAATTCACTGCCCTGTGGCTACCAGCACAGCTCCTTTGAGGAGGCTAGCAGGGTGATCAACAGGGACAAGAACAGATATCCAAACATCCTACCATATGACCATTCTAGAGTGTTGTTAACTCAAATCGATGGTTATTCTTGTACGGACTACATAAATGCCTCATACATAGATGGTTATAAAGAGAAGAACAAATTCATTGCAGCTCAAGGCCCAATGCACGACACTGTGGCAGACTTTTGGCGGATGGTTTGGGAACAGAAGACTGCTACTATAGTGATGCTCACTAAcctgaaagagagaaaagagGACAAGTGTTACCAGTACTGGCCAGACCAGGGCTGTTGGATGTATGGGAATATGAGGGTGGCAGCAGAGgactttactgtactggtggacTACACCATGCGCAAGTTCTGTGTACAATATCAGGGGAGTGATGGCCCCAGGGCTCCCTGCCTGGTCACCCAGCTCCACTTCACCAACTGGCCTGACTTTGGGGTACCCTTCTCCCCCATTGGCATGCTCAAGTTCCTCAAGAAGGTGAAGACGGTCAACCCGTCTTATGCAGGACCCATCGTGGTGCACTGCAGTGCTGGTGTAGGAAGGACTGGAACATTTATCGTCATAGACGCCATGATTGACATGATGCATGTAGAGCAGAGGCTGGATGTCTTTGGGTTTGTGACCAGAATACGGGAGCAGCGCTCTCAACTCGTCCAGACTGATATGCAGTACTCATTCATCTATCAGGCTCTGTTGGAGTATTATCTATATGGTGACACAGAGCTGGATGTGTCCTCTCTGGAAGGCCATCTGCAGAAGCTCCACAATACCAGAGCACCCCTCGAAAGGCTGGGCCTAGAAGAAGAGTTCAGGAAACTGACCAATGTACGCATAATGAAGGAGAACATGAGGACCGGAAACCTTCCTGCCAACATGAAGAAGAACCGTGTGCTTCAGATCATTCCATATGACTTCAACCGGGTTATATTGTCAATGAAAAGGGGCCAAGAGTTCACGGACTACATCAATGCATCATTTATTGATGGCTACAGACAGAAGGACTACTTCATTGCTACCCAAGGTCCTCTGTCCCACACGGTGGAGGACTTCTGGAGGATGGTGTGGGAGTACAGGTGTCACTCTATTGTCATGCTCACTGAACTCAAGGAGAGGGAACAGGACAAATGTTTCCAGTACTGGCCAGCAGAGGGCACTGCGACATTTGAAGACTACACTTTGGAGCTGAAGGGGGATGCCCTATGTGACACTTTCACTCTGAAGGACATGGTGCTCACATATGGACCAGAAAAACAGTCAAGGCATGTCCGACACTTTCATTTCCACGGCTGGCCTGAGATCGGAATACCGGCAGAGGGAAAGGGAATGATCGACATCATTGCTTCAGTGCAGAGACAGCAACAACAGTCTGGAAACCACCCTATCATAGTACATTGCAGTGCTGGTGCGGGTCGGACTGGGACATTCATCGCCCTGAGTAATATTCTGGAGCGGGTGAAAGCCGAGGGCCTACTGGACGTGTTTCAGACAGTCAAGAGTTTACGCATGAAGAGACCACACATGGTTCAGACTGTGGAACAATATGACTTCTGCTACAGAGTGGTTCAAGATTTTGTTGACATTTTCTCAGACTATGCCAACTTCAAATGACAATATCTGCTACATATACCCATGTATTTTTCCGACAGGCATATACCATTTTGTTAGATCGCTCTTTTTACGCTTTGCACTTAAACACAGTACTTAAACTTATTGTtcaatattgtaatatatttgtttgtatctctgtctgtttttttgttaGCTCGTTCAAAACAGCCCAAAAGAAAATGAAATATTATGTCTATTTAGTCATGGACTTTTCAACTAGTTTTGTGTCCTGAGTATTTGGATGTCAAACGTTTTGAATTGAAAACCTAAGACCATGTGATCAAAAATGGGAATGAATTGTTTATTATGTTAACATTATGTATATAcgctgagtgtataaaacattaaggacCAGCTTCCTGATATTGAGgtgcacctggtcagtctatgtcatggaaagtgcaggtgtccttaatgttttgtacactcagtgtatattgattAACTTATGCATATAATCTGTATCTATTTATATAATGTAGAATTTAATGTACATTTTGAGTATGTTAAAAACATTACCACAAGATTGCCTTTCGTTGCCTGTGGTCTGTACCATAGCTGTGGCACATACTGTGGAAGTCCACAGattggacaaaaaaaaaacagctgttgTGAAGATACACAACCTGCCATAATAGTTTGTCATTGTATTACTGACCTTACAAGTGACTTAAGTGCCATTTAATATTTGCTGTGTATGATGTTTAT

Function

GO: NA

KEGG:

id description
K18033 PTPRE; receptor-type tyrosine-protein phosphatase epsilon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2113831 lncRNA downstream 296 25129602 ~ 25130960 (-) True G1846446
TU2113868 lncRNA downstream 6146 25124777 ~ 25125110 (-) True G1846483
TU2113668 lncRNA downstream 105117 25025909 ~ 25026139 (-) True G1846287
TU2113664 lncRNA downstream 107745 25023299 ~ 25023511 (-) True G1846283
TU2113557 lncRNA downstream 182477 24948580 ~ 24948779 (-) True G1846180
TU2113903 lncRNA upstream 3337 25195662 ~ 25195874 (-) True G1846518
TU2113904 lncRNA upstream 4559 25196884 ~ 25197084 (-) True G1846519
TU2113905 lncRNA upstream 5436 25197761 ~ 25197973 (-) True G1846520
TU2113910 lncRNA upstream 8471 25200796 ~ 25201140 (-) True G1846525
TU2114124 lncRNA upstream 28847 25221172 ~ 25258790 (-) True G1846716
NM_001124281.1 mRNA downstream 2305 25127611 ~ 25128951 (-) True gnrh1
XR_005039146.1 mRNA downstream 285052 24839909 ~ 24846204 (-) True LOC118943844
XM_021580531.2 mRNA downstream 317898 24806973 ~ 24813358 (-) True LOC110502483
XM_021580528.2 mRNA downstream 364486 24754565 ~ 24766770 (-) True LOC110502481
XM_021580527.2 mRNA downstream 364718 24754565 ~ 24766538 (-) False LOC110502481
XR_002470430.2 mRNA upstream 225039 25417364 ~ 25418599 (-) True LOC110503059
LOC110503093 mRNA upstream 510931 25703256 ~ 25704420 (-) True LOC110503093
LOC110503094 mRNA upstream 536163 25728488 ~ 25735096 (-) False LOC110503094
XM_021580551.2 mRNA upstream 692631 25884956 ~ 25932473 (-) False LOC110502495
XM_036960039.1 mRNA upstream 692631 25884956 ~ 25932474 (-) True LOC110502495
TU2111672 other downstream 1785485 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 1897833 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 1912986 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 3759457 21345514 ~ 21371799 (-) True G1841959
TU2108760 other downstream 4187641 20943307 ~ 20943615 (-) True G1841694
TU2114269 other upstream 247482 25439807 ~ 25440387 (-) True G1846858
TU2118048 other upstream 2882600 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 3732414 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 5959284 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 5959284 31151609 ~ 31169977 (-) True LOC110502574

Expression Profile