RNA id: LOC110503094


Basic Information

Item Value
RNA id LOC110503094
length 2413
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC110503094
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 25728488 ~ 25735408 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGTTCAGCAACAGCTGGGATTGGGAACCGAGAGGATGGCGTCCCTCCAGACCGTGGAAGTGAAAAAGTGGATGACAGTGGGGGCGACAGTGGCAGGCAAGGCAACAACGAAATAAAGAACCGTGCAGTGAAGTGCTCTGCTGCCCCTCAACCAACCACCTATGCACTACTACAGGAGAAGACTGATCTGAAGCTGCCTCCTGCCAACTGGCTACGGGAGAGCCCCCAACGTGGGCCTGCAGGCACCTCTAACATCAATAATCTATTGAAGATCCCCTACAGTAAGTCCCATGTCAGTATGGCTGTCCACCGTGTGGGAAGGTCTCTCCTTCTAGATGAACTGGCTCTTCATGAGTTCTTCTCAGACAACCCTGTTGAGGAGTGTGGGGCGGAGGATTTGGTCCCTCCTGGCCCGTTACCTTCATCAGCACTGCTTCAGACTCGGAGGAGGCCGCAGCACACAGAGGAATGTGTTCCCATGGACAGCAAGTATCCATTGGGACAAGTGGCTTCCAAAGAGCAGAACCTTACCACATTGTTCAACAAAGGGGAGAACAGTCAGGGTTTGAGGAATAACTTTGTGAGGAACATCTTGTGGATGTTTGAGGACATCCACATGCTGGTGGGGTCCAACATGCCTATCTTTGGAGAAGGATGCTACCCAGCCTGCGGCTCAGAACCTCAAGCCAATCAACATTCTCGCAGTGGAAGTGACATCGTAAAGCTGTATGACCTCATCACTCTCTGTGAGGAAGCAGCAGAGGAGAAATGCCAGAACCCCTTCACCCTGCCCGTGGATATGCCTCTTTACAAAGTGGCTAGCAACATGATGCTGAAGAAGAGCCAGAACAGGAAGCATTATGGGACAATCGGAACGTTGCTGTGGGCGGGGGGCTCTTGAGGACAGCTACAGTGACGAGGAGGCTCAAGAAGATCTACCAGAGGACAGTCATGAGAATGGCTCCTGCAGTACCACCTCGGAGCCACAGGATGATAGCAAAGCTGTAGCTATTATCAAATCAGTGGGGGAGCTGTCTGTTCTAGAGAAGTCCAAGTACACTCATCAGATCAGGCCAATCTATGCATTTCCCATCTCTCAAAACAAGGAGGAAAGATGTCGGGATGTCCTCAGCTATGTCTTAAATGCCTGTTGGATGGCAGCATTAAGAAGGAGAGTGACCTCCCAGCTGCTGACCCAGAACACCCCCATCCCCCTGAAGTTCCTTGTTCCTCTGTCCCGATCAGGGATGATCCCAGGGTCCTGGCAGCACCGTATGAAGCTGCAGCTCTTCTTCAAAGTGCCCAAGGCCTACTACATACTGTCAGACGCTGCCACTAACCTGCTGAAGAACAGCCGGTCCCTGCACTACATCAAACTCACCCTCCAGTGCCACGatGCCTACTGTTCGGTGAGGAGTATCATGTACCTGCTGGTGCTACTGTTCCGCGtccagtgtctgtctctgtgtggggACATCCATCTGTTGCTGGCCCGGAATGCAAGTAACCGTGCTGCCTACCTTTAGGAGTCCAGCTACCAGACCAACAAGGACCAGGAGTTGCTGCACAGAGAGAGCAGCTGCAAGGCCTTTAATATGGCCAGTGATCTGGCCATGGACCGAGAGTACTAGCTGTTTGTGAGCAGTAAGTGTTATGAGGCGGCCTACGAGCTGCTGACCTCCGGGTGGTAAAGGAGCACAGCCCTGAACAGCTAGCCCAGGTGCTGAAGAGACTGGGCAACATTTGCAACGAGATAGGAGTCTTCTACATGAACCAGGCTGCTGCCATGCAGACTAAGAAGGAAGTGAACAAGTCTGTATCTATAGCTGAACAGGAGATGTGGAAGAAGAGTTTCTCGTGCTTTGAGAAGGGCATGAAGAACTTTGAGGCCATCGAGTACAGCACCAACACCTCTCTGCTGCTGTGCAACACAGGCAAACTGATGAGGATCTGTGCCCAGGCCCACTGCTGTCTCTGCAGACCTGAGCAGAGGAGAGTTCTCCCAAGAGGAAGCTCTCTATTACAATAAGACTGCCTACCTGAGGGCTATGCAGTCCTTGGCCACCAGAGGGAACCACCCTGCAGTGTGGGACTTGTCCGCAACCTACTTCAGCCTGGCCACTCTGCTGCAAGAAGTTGCCCCTCTGTCCAGGAAGGCCCAGGAACAGATTGAGCAGGAGGCACAGGAGCCTGGCAGAGCTACGGCACAGGAGCCTGAGCTGCGCCACAGCAAGGCGACGGATGGCCCAGAGTTGACAGGACCCCTTGACAGTAGTGCAGATGGCCCCATCTCCTCAGGGCTGAACACAAAGGAAGTGATGCAGTTGATCGGTGTCTTTGAGCTCAGTTTCTCCTTCCTACTGCTGCAGGTGGTCAAGCTGATGACAACCATGAAGCGCAAACCAATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2114340 lncRNA downstream 205123 25523085 ~ 25523365 (-) True G1846928
TU2114339 lncRNA downstream 205572 25522270 ~ 25522916 (-) True G1846927
TU2114313 lncRNA downstream 222590 25505670 ~ 25505898 (-) True G1846901
TU2114279 lncRNA downstream 276903 25451335 ~ 25451585 (-) True G1846868
TU2114277 lncRNA downstream 280058 25448160 ~ 25448430 (-) True G1846866
TU2114853 lncRNA upstream 29892 25764988 ~ 25818675 (-) True G1847409
TU2114965 lncRNA upstream 164900 25899996 ~ 25905382 (-) True G1847511
TU2115031 lncRNA upstream 279727 26014823 ~ 26015088 (-) True G1847576
TU2115034 lncRNA upstream 280815 26015911 ~ 26016597 (-) True G1847579
TU2115035 lncRNA upstream 282364 26017460 ~ 26017691 (-) True G1847580
LOC110503093 mRNA downstream 24068 25703256 ~ 25704420 (-) True LOC110503093
XR_002470430.2 mRNA downstream 309889 25417364 ~ 25418599 (-) True LOC110503059
XM_021580534.2 mRNA downstream 536163 25131256 ~ 25192325 (-) True LOC110502487
NM_001124281.1 mRNA downstream 599537 25127611 ~ 25128951 (-) True gnrh1
XR_005039146.1 mRNA downstream 882284 24839909 ~ 24846204 (-) True LOC118943844
XM_021580551.2 mRNA upstream 149860 25884956 ~ 25932473 (-) False LOC110502495
XM_036960039.1 mRNA upstream 149860 25884956 ~ 25932474 (-) True LOC110502495
XM_021580552.2 mRNA upstream 204630 25939726 ~ 25947986 (-) False LOC110502496
XM_021580553.2 mRNA upstream 204630 25939726 ~ 25947986 (-) False LOC110502496
XR_002470336.2 mRNA upstream 204630 25939726 ~ 25947986 (-) True LOC110502496
TU2114269 other downstream 288101 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 2382717 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 2495065 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 2510218 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 4356689 21345514 ~ 21371799 (-) True G1841959
TU2118048 other upstream 2339829 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 3189643 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 5416513 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 5416513 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 5482501 31217597 ~ 31218171 (-) True G1854905

Expression Profile