RNA id: XM_021580553.2


Basic Information

Item Value
RNA id XM_021580553.2
length 2939
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110502496
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 25939726 ~ 25947986 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaccggatgcttcatatttatacatccggtgaaacatCTAGGAGGGGTGCTATCATTGAGTTATAGATGGGATGTTTCCATCATGGCGGCATCCATTTCGGGATATACTTTTAGTTCTGTGTGTTATCACAGCGCTAACAGCAACTCTGATCATGAGGGATTCCTTTTAGGAGAAGTTAGGCATGAAGAAACTGTCAGCATCAGTGATACACAGATCAGCAGTTCTGAACTACTCCAAGTAGTAGaagTCCACAATCATGAACCTTGTGCACAGCTATTTAGCTTTTATGATTATGCTGGACAAGTCAATGAAGAGAGTCTTAACAGAATTCTTAAAGACAGACGGAAAAATGTCATCGGCTGGTACAGGTTCAGGAGGAACACGCAGCAGCAGATGTCGTTCAGGGAACAGATCATCCATAAGCAGCTGACCCAGCTGCTAGGAGTGCCTGACCTAGTCTTCCTCCTCTTTAGCTTCATCTCCACAGCCAACAACTCCACACACGCCCTGGAGTATGTGCTGTTCAGACCCAACCGCAGGTACAACCAGAGGGTGACCCTCAGCATCCCAAACCTGGGCAACACCAGCCAGCAGGAATACAAGGTCTCCTCTGTCCCCAACACCTCACTCAACTACGCCAAGGTCATCAAAGAGCATGGGGCTGAATTTTTTGACAAAGATGGTGTGATGAAGGATATCAGAACAATTTTTCAAGTCTACGGTGCACTACAAGATAAAGTGCAATCTGTATGTGGAGAGGTTGAGCAGAGTGAACGTGTGAAAGAGAAAGTCCAGGAGGAGGTGAACAAACTCAAACAGCAAATTGTTCTCAGGAAACGAAAAACCACAGATGAAGAGAGAAGACTCCAGGAAGCGCAGAACCCTGAGCCACGTCTCACTCCTGAGGAGAACACAGAGCCCCCGGAGACCTCCCTCCTGTCCAGAGTGGCCTTCCACACCCCATCCACCCCCGAGCGGCCAGGTCCCTCCGCAAACCCTCCTGCCTACGCAGACCTCCTCTCCTTGCAGAATGACTCACTTCTCCCCTTCTCATCCTCCCCTACCAGTGCTGCGCTGCTCCCCCGGCCCCAGGCTGTGGGCTCCCCAGGCCACCCTTCTCCCAGCCCATTAGGTCTGGGTCTCAGTGCTGGCCCCAACCCTGCTCCTAGCCCTGGTACACCATACCTGGGAAACGGGGACGGATCCAGCTCTGACTCCCTGGACAGACAGGCCGCAGGGcaagaggatgatgaggaggatgatgatgatgacagcaGCGAGTACGAGAACCTTGTGAGCGAGGTGGGGCAGTTGCCCCCAGTTTCTGCCAGTGTGTTGCTGCAGGGCCGCCCAGCCGCCCTCAGTCCGGACGGCGACGCCTCAGTCCGTGGTTCACAGACCTAGTAGATGGGGATGTGGGGGGGCTCAATTAACTGACGCACCGAGATAGGAGGGCGTCCAAACCAATCAAAGATAATTATTCTATATTAGAGGAAGTGCCAGCCCTGAAAATAAAAGGCATGCGCAGGTGGGGTATTCTGCTGTGTATATCTGTTTGTCTTAGTTTTATCTCTTCTGGGGGGAGTATCAAGCTTCATGGGGTTTTACTTTTCTGTCTAGCATGGAAAAGCTAGTCCGTTGGAGCCTGGCTCTCTTCAGTGGATGTGTTTTGATTTAGGGACGGAGGACGTTATAATGGAATAAACGCCAACCGGTTTGTCCGACCTCTCCGTATGGATAGACCCACTCCGCTTTTCCTGGATCATGCTGCGTCACATCTGCATCACCAACTTTAAGCATCCAATTGTACCATTACCTCTTGCACTATTTTTGCTTTCTTTTAACAATTTAAGAAAAGCAAAAGGAAAATGTTCTGCGGCCTTCAAaaccttttctttttttttgtgagaCGGGTGAGattttttttcaatatttttgGGGTGGTGATTTGCTTATTACAAAAAAGAAGAGATGGTGGTGACTGCCAAAGTAATAGAAACACTTGAGAAAGTATATTCaaagcaggtgcttccaaacACAGGTGGGGAACCTGAGTGGCCTGCCAAGCATTATCATCCCATCATGCCTATGGGCATGTATAAAAATGCttggcaggccattattttggctactatGGCTATGCCACCAACCACAGGGCATGAGTTgttactgaatggtttgatgagcatgaaaacaatgtaaaccatattCAATGCTGTCTGTCACCAGACCTCATCCCAATTGAACGCTTATGGGAAattctggagcggtgcctgagacagcatttttCACCACCATCCATGTCGCATCCCTCccaagttccagacacttgtagaatctatgccaaggtgcattgaagctgttctggccccaacgccctattaagtcactttatgttggtgtttccttttatTGTCAGTTATGTATGTAAACTATCATTTCGGTAGCCTGCACGGTTCTAGACACTCAACTTTGAACTGTCATTAGGATTTAATTTCCTTTTAACATCAATGTATTTTTATGAATCATGCGGTTGCCTATTTAGATGACGAAGAATAGTTTTTATTCAAAGTTTTCCTTTGCCACTACTATAATGGGTGCTTATATTATTTTTATGACAACTTTAATGTTACTCTCTCATtcttctataataacactgaAACTGTATGCGCTTTGCTGCACTTAACAAATGTAGTTGATTTATTTTATTGTGCTTTACCAATGCAGTTCAGTTGTGCTACTTGAGTAGTATGCTTTGACCACCTGAGCAGAGCTAGCTCAGCTTTTGCGCATTGTATGGGGTCGACAGGGCGAAAACACAACTTACTGTAGCTTTACTAACCAGACAACTCTGCTGCATCAGAGCTAGCAGTAAACAAGAAACTGCTTCTACATAGACCTGTCTGCTTCTTCCACCTGTTGTCCTTGCACTGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2114965 lncRNA downstream 34344 25899996 ~ 25905382 (-) True G1847511
TU2114853 lncRNA downstream 121051 25764988 ~ 25818675 (-) True G1847409
TU2114696 lncRNA downstream 204318 25734162 ~ 25735408 (-) True LOC110503094
TU2114340 lncRNA downstream 416361 25523085 ~ 25523365 (-) True G1846928
TU2114339 lncRNA downstream 416810 25522270 ~ 25522916 (-) True G1846927
TU2115031 lncRNA upstream 66837 26014823 ~ 26015088 (-) True G1847576
TU2115034 lncRNA upstream 67925 26015911 ~ 26016597 (-) True G1847579
TU2115035 lncRNA upstream 69474 26017460 ~ 26017691 (-) True G1847580
TU2115036 lncRNA upstream 70013 26017999 ~ 26018296 (-) True G1847581
TU2115325 lncRNA upstream 272218 26220204 ~ 26223088 (-) True G1847862
XM_036960039.1 mRNA downstream 7252 25884956 ~ 25932474 (-) True LOC110502495
XM_021580551.2 mRNA downstream 7253 25884956 ~ 25932473 (-) False LOC110502495
LOC110503094 mRNA downstream 204630 25728488 ~ 25735096 (-) False LOC110503094
LOC110503093 mRNA downstream 235306 25703256 ~ 25704420 (-) True LOC110503093
XR_002470430.2 mRNA downstream 521127 25417364 ~ 25418599 (-) True LOC110503059
XM_021580558.2 mRNA upstream 278644 26226630 ~ 26230546 (-) True LOC110502501
XM_021580559.2 mRNA upstream 446247 26394233 ~ 26398133 (-) False LOC110502502
XM_021580561.2 mRNA upstream 455627 26403613 ~ 26406554 (-) True LOC110502503
XM_021580562.2 mRNA upstream 509024 26457010 ~ 26465890 (-) False cuzd1.2
XM_021580563.2 mRNA upstream 509024 26457010 ~ 26465890 (-) True cuzd1.2
TU2114269 other downstream 499339 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 2593955 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 2706303 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 2721456 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 4567927 21345514 ~ 21371799 (-) True G1841959
TU2118048 other upstream 2126939 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 2976753 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 5203623 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 5203623 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 5269611 31217597 ~ 31218171 (-) True G1854905

Expression Profile