RNA id: XM_021580559.2


Basic Information

Item Value
RNA id XM_021580559.2
length 2713
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110502502
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26387522 ~ 26398133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAATGAGCCAACGCTACAATACTGCCTTTAGTCCAGAGCGCGTGGAAGTCGACCAGGAATACATTCATGTTCCCTGAGCTCCAGGAAAAAACAACCTAAGCATCCCAATTTTTAAAAAGGTTTTACTAAAAAAGAAAACTATTTTCGAACTCTTTTACACAAGAGGAGTCCTCACAGACAAATAATAAGAAAACAATTATACAAAAACTATACGATATAGCCCAATCTTACTGTTATGAGTCGAGAATGAGTACCACAGAAGACAACGGAAGCAAGTGCTCTTCGGCCCCGATTTCCACCTTCACTATTCAGTCGATATTGGGCAAGTCTTCGGAGAAGCCACGGTCCGGGGCGAAGGAGAGTTCCAAGGGACTGCAGCTGGCGAGGACGCGCTTGCTCTCGGTTTCTTCGGAAGAGGAGTGCAGCGGTGGGGAGGACTCTGCAGACTGTTTCTGCTCGGATCCTGGTCACAGAGAGCCATGCAACCAACATCAACCACTTAATTTTTCATGTTTAGGTGCAACCAAGGGACTTATTTCAGGCCATGACGGGATTGCACGGCGACCGCACTTGACACAGCCTCTGCTGCAGGATTACAAAGAGGAACAAGAGAGACCATGCATTCCAATGTCACCTATTtctgaggagagacagacagacggtgcGGACAAGCAGACTAACTCGTCCAAGAAGAAGACTCGTACAGTCTTCTCGCGGAGTCAGGTGTACCAGCTCGAGTCCACATTTGATATGAAGAGGTATTTGAGCAGCTCCGAGCGAGCCTGCTTGGCATCAAGTCTACAGCTAACAGAAACTCAAGTGAAGACGTGGTTTCAGAACCGCAGAAACAAATGGAAACGACAACTGTCGGCGGAACTGGAGGCTGCGAACATGGCACACGCATCCGCACAGACACTGGTCGGAATGCCGCTTGTTTTTAGAGAAAACTCCCTGCTCCGGGTACCAGTTCCAAGATCTATTGCTTTTCCAACGCCACTATACTATCCCGGCAGCAGCCTACAAGGGTTACCACTGTACAATCTGTATAACAAGATTGAATATTGACTCAATGCCTGTGATGACAGTCCAAAATAATAACACGTTAACACGCGACAGTACTTTCTTATAAATGTCTGCCAAACTCATGTCTATTATATAACTTTATTTGTTGAAAAAAAATATGTCTTATTATGCAGCAACTGTATGTTTTAACAAGAAAGCAACAAGCTTCTCTATATGTATAAAATACACCATGTGTATAATAATTATTTTCAACCTTGATTTTGCGTTCTTCTCCCTGGTTTAACGCGTTATACATTGCGATAATTTAGACACTGAAATACAGATGTTATCAAGTGGACTGTTTCCCAAACGAATTATGAATGCATTCAAACACAGTTTTAAATGTAATGTGAATGTGAATATGAAATATTGAGGTCCAACCACCTTAATCTGTTAAAAAATACTGGAAGAAATTGGGTTTATACATTTGGGGATATGGAAGTGCAAACTCGTTGCTTCGGTTTTGGGGAAATGTTATTGTAATCATAGGCCCACCAAATAAACTGCTAATTCAATACATTTTCTATATCAGTGAAATATGGGTTGGGATTTATTGTACATTGCCCgtttttaatatttattttgtgGCATTCAATCCATTCAATTGTGGCATTCAATCCAGTTTTTGAAAAACAGGAAAGGAAAAACGAATTTCATATGTACAATATAAAATAGCTTACTTATTTAAAATATTCACACTGCAGCTCAAAGATTATTAAAGAAAAACctatatttgttatttttctgtgTAACTTTCTGCCATGGAAGTTTCAATCAACATGACATCCAGCTACAGTTGGCCAAACTCTCTTATAAACATATGACTCTGCAACTAACTAGGCGTCTAAAGGTGAACAATGATACTAAAACACCCTCTTAGCCAGCGGCATAAGCCTCCAGTGCGCCAAAATGTATATTAAAAACATCTAGATTGCCTGGTAGCCTAAAAACAATGTAGGACACTGTTTTTCCGTATTCAACATATATTTGTCAAATGTGAACAATGTAATATTATACCCTAAGCCTCATAGGTCTGTAACAAGTGCTCATTTGCCTGCTACTAACAGTGTAACTAACAAGATGTGCTATTAACAACAAAGTGTTGTGAACATGTTTTTTACCAGAAGGGGACTACAGTTTCAAAATGATCTATGTATACAAGTGATTTCAGGTGTAGCCTTCCACTGCAGTATTACTGGCTGCTTCCCTTCAACCATGGACACATAATGAGTTAAGATCGTGTCAAACGCTTTGGTTATATTTATGTTGCCTGTCTTAAACACAAAGACTCTTTTCATCTGTCATCACAGTCCTTTGGCAAGTTAGCCAATGTGAAATGTGTCATATGTACTTATGAGTGTCAACTCAGTGGTCTGCTTAACCTATTTCAGGGGAAGGGAAAGAGATGTACACCATCAGCAACCAATCAGAGTCATGGCGGCATATTCTGACATTTGAAGTGTGCATTACAGGAACGCCTAGCCTTGTTGGAGGGAATGTAATAAGCAGTGCCATTGTTAAAGTTCAAGACTCACCGCATCGTTGTGTGATGCTTTTCCTTTTCAAGCTAGccaccactcaaatcaaatcaaactttatttgccacatgcgccgaatgcaactgtagactttacagtaaaatgcctact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2115506 lncRNA downstream 24051 26369904 ~ 26370182 (-) True G1848039
TU2115505 lncRNA downstream 24568 26369466 ~ 26369665 (-) True G1848038
TU2115503 lncRNA downstream 24829 26369134 ~ 26369404 (-) True G1848036
TU2115409 lncRNA downstream 93666 26300361 ~ 26300567 (-) True G1847945
TU2115399 lncRNA downstream 102058 26291908 ~ 26292175 (-) True G1847935
TU2115655 lncRNA upstream 19768 26417901 ~ 26418162 (-) True G1848177
TU2115661 lncRNA upstream 29121 26427254 ~ 26427507 (-) True G1848183
TU2115677 lncRNA upstream 48110 26446243 ~ 26447841 (-) True G1848195
TU2115685 lncRNA upstream 69832 26467965 ~ 26468202 (-) True G1848203
TU2115745 lncRNA upstream 146675 26544808 ~ 26546370 (-) True G1848261
XM_021580558.2 mRNA downstream 163687 26226630 ~ 26230546 (-) True LOC110502501
XM_021580552.2 mRNA downstream 446247 25939726 ~ 25947986 (-) False LOC110502496
XM_021580553.2 mRNA downstream 446247 25939726 ~ 25947986 (-) False LOC110502496
XR_002470336.2 mRNA downstream 446247 25939726 ~ 25947986 (-) True LOC110502496
XM_036960039.1 mRNA downstream 461759 25884956 ~ 25932474 (-) True LOC110502495
XM_021580561.2 mRNA upstream 5480 26403613 ~ 26406554 (-) True LOC110502503
XM_021580562.2 mRNA upstream 58877 26457010 ~ 26465890 (-) False cuzd1.2
XM_021580563.2 mRNA upstream 58877 26457010 ~ 26465890 (-) True cuzd1.2
XM_036960214.1 mRNA upstream 876419 27274552 ~ 27309747 (-) False LOC110502513
XM_036960215.1 mRNA upstream 876419 27274552 ~ 27310171 (-) False LOC110502513
TU2114269 other downstream 953846 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 3048462 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 3160810 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 3175963 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 5022434 21345514 ~ 21371799 (-) True G1841959
TU2118048 other upstream 1676792 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 2526606 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 4753476 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 4753476 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 4819464 31217597 ~ 31218171 (-) True G1854905

Expression Profile