Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00051884 |
| length | 676 |
| lncRNA type | retained_intron |
| GC content | 0.51 |
| exon number | 5 |
| gene id | XLOC_026630 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 37776489 ~ 37785873 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042981 | regulation of apoptotic process | biological_process |
| GO:0043280 | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | biological_process |
| GO:0043065 | positive regulation of apoptotic process | biological_process |
| GO:0001836 | release of cytochrome c from mitochondria | biological_process |
| GO:0097192 | extrinsic apoptotic signaling pathway in absence of ligand | biological_process |
| GO:0046686 | response to cadmium ion | biological_process |
| GO:0051597 | response to methylmercury | biological_process |
| GO:0008630 | intrinsic apoptotic signaling pathway in response to DNA damage | biological_process |
| GO:0008053 | mitochondrial fusion | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005741 | mitochondrial outer membrane | cellular_component |
| GO:0015267 | channel activity | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-000511-6 | Predicted to enable channel activity; protein heterodimerization activity; and protein homodimerization activity. Acts upstream of or within several processes, including positive regulation of cysteine-type endopeptidase activity involved in apoptotic process; response to cadmium ion; and response to methylmercury. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial outer membrane. Is expressed in several structures, including digestive system; female organism; heart; immune system; and male organism. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; ataxia telangiectasia; colon adenocarcinoma; and colorectal cancer. Orthologous to human BAX (BCL2 associated X, apoptosis regulator). |
| ensembl_id | ENSDART00000146063 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00051882 | lncRNA | downstream | 4113 | 37771677 ~ 37773728 (-) | True | XLOC_026629 |
| TCONS_00053076 | lncRNA | downstream | 17907 | 37757463 ~ 37759934 (-) | False | XLOC_026628 |
| TCONS_00051874 | lncRNA | downstream | 77859 | 37678156 ~ 37699982 (-) | True | XLOC_026627 |
| TCONS_00051872 | lncRNA | downstream | 107666 | 37669163 ~ 37670175 (-) | False | XLOC_026627 |
| TCONS_00051868 | lncRNA | downstream | 128452 | 37634100 ~ 37649389 (-) | False | XLOC_026626 |
| TCONS_00051885 | lncRNA | upstream | 740139 | 38525979 ~ 38529416 (-) | True | XLOC_026631 |
| TCONS_00053077 | lncRNA | upstream | 1185595 | 38971435 ~ 38973341 (-) | False | XLOC_026636 |
| TCONS_00052479 | lncRNA | upstream | 1185595 | 38971435 ~ 38975355 (-) | False | XLOC_026636 |
| TCONS_00053078 | lncRNA | upstream | 1185595 | 38971435 ~ 38975614 (-) | False | XLOC_026636 |
| TCONS_00053079 | lncRNA | upstream | 1188420 | 38974260 ~ 38975698 (-) | True | XLOC_026636 |
| TCONS_00051880 | mRNA | downstream | 4041 | 37766473 ~ 37773800 (-) | False | XLOC_026629 |
| TCONS_00051877 | mRNA | downstream | 17845 | 37757780 ~ 37759996 (-) | False | XLOC_026628 |
| TCONS_00051875 | mRNA | downstream | 17872 | 37757385 ~ 37759969 (-) | False | XLOC_026628 |
| TCONS_00051879 | mRNA | downstream | 18468 | 37757921 ~ 37759373 (-) | True | XLOC_026628 |
| TCONS_00051876 | mRNA | downstream | 18694 | 37757393 ~ 37759147 (-) | False | XLOC_026628 |
| TCONS_00051886 | mRNA | upstream | 862147 | 38647987 ~ 38692920 (-) | False | XLOC_026632 |
| TCONS_00051887 | mRNA | upstream | 865063 | 38650903 ~ 38683327 (-) | True | XLOC_026632 |
| TCONS_00051888 | mRNA | upstream | 919585 | 38705425 ~ 38745598 (-) | True | XLOC_026633 |
| TCONS_00051889 | mRNA | upstream | 977051 | 38762891 ~ 38783951 (-) | False | XLOC_026634 |
| TCONS_00051890 | mRNA | upstream | 979692 | 38765532 ~ 38777553 (-) | True | XLOC_026634 |
| TCONS_00051881 | other | downstream | 4041 | 37767285 ~ 37773800 (-) | False | XLOC_026629 |
| TCONS_00051873 | other | downstream | 77890 | 37673648 ~ 37699951 (-) | False | XLOC_026627 |
| TCONS_00051859 | other | downstream | 702028 | 37075698 ~ 37075813 (-) | True | XLOC_026621 |
| TCONS_00051856 | other | downstream | 809848 | 36967871 ~ 36967993 (-) | True | XLOC_026618 |
| TCONS_00051846 | other | downstream | 1021692 | 36756033 ~ 36756149 (-) | True | XLOC_026612 |
| TCONS_00051892 | other | upstream | 1127538 | 38913378 ~ 38918717 (-) | False | XLOC_026635 |
| TCONS_00051900 | other | upstream | 1452256 | 39238096 ~ 39259677 (-) | False | XLOC_026643 |
| TCONS_00051909 | other | upstream | 1863605 | 39649445 ~ 39649562 (-) | True | XLOC_026651 |
| TCONS_00051914 | other | upstream | 2171518 | 39957358 ~ 39957474 (-) | True | XLOC_026654 |
| TCONS_00051921 | other | upstream | 2302845 | 40088685 ~ 40088801 (-) | True | XLOC_026657 |
