RNA id: XM_021580563.2


Basic Information

Item Value
RNA id XM_021580563.2
length 2677
RNA type mRNA
GC content 0.50
exon number 21
gene id cuzd1.2
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26457010 ~ 26465890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTTTAGGTATATAAACTGTCCTGTTTTGGGACTGTGTCATCGTCAAGGGGAAGGTGAAACATGGAGATTGCTACCACTCTTCTTGTTCTTTGCTCTGTGATAGTCTCACATGGAGCTCAAGGTCAGTGGGAGACATGGACCACAGCAGAACCTTGGAGAACAGTTGACCCATCAGGCACCAGTGCCCCATGTGGTGGCTACCTGACTGCATCAAAGGGCCAATTCAACAGCCCCAACTACCCCAGCAACTACCCCAACAATGCCTACTGTACATGGAACATTCAGACCCCACCGGGCAGCCAAATCGTTCAGCTGGAATTCCCCTATGTCAATCTTGAGggtgacttcaactgtaggtatgaTTCCATCTCCGTGTACGATGGCTATTCCACCTACAACCGACTCCTGGGAAAGCTGTGTGGAGGACAAAGCTCAACCTTTTACTCCACCGGAAGTTCAATTACTGTGCAATTCACAAGTGACAGCTCCTCAACGTACAAGGGGTTTCAAGCAGAGTATCGTGTCGTAGATGGAGGTTCTTGTAGACACAACTGTGGCTATCAGGTTGGCAACTGCTCCTGCTCATATTCCTGTGAATACAGGGGCAACTGTTGCCAGGACTATCAACAGATCTGCTATGACACAACCACAGAACCCAGCACCACAGATGCAGGACCAACAACCGGAGATTATTATTCCTGTGAGTACAACTGTGGCTACAGTGGCATGGTCTGCTCCTGCACCTCATCATGTCAAAACCATGGCAACTGTTGTCATGACTATCATGATTATTGCCCGGGTACAACAGAAACACCTACAGCTCAGCCTTCCTGTAGGTACAACTGTGGTTATAATCTTGGAAGCTGTTCCTGCTCCAGCTCCTGTCAATACTACGGCAACTGTTGCTATGACTACAATGAGATATGCTATGGCACAACCACAGACTCCATCACCACAGCTGCAGATCCAGCTACTGCAACAACCGGAGGTTGGGGTTCCTGTAGATACAGCTGTGGTTCTTATGCCGGTGGTTGCTCCTGCACCTCATCCTGTCGATACTATGGCAATTGCTGTCATGACTACAATGATTATTGCCAGAGCACAACGTACGAAACTGGTACAACCTCAGAGGCTTCCTGTAGGTACAACTGTGGTTTCAATCTTGGAAGGTGTTCCTGCTCCAGCTCCTGTCAATACTATGGCAACTGTTGCTATGACTACAACACGTActgccccaccaccccaccaGAATCAACAGTCTCAGGGACTCACCCCACCTGTGGAGGAAACCTGCATGGCTCTGGGTCCATCTCAAGTCCATACTATCCAGAATATTACCATGACAACGCCTACTGTGTCTGGCATCTATCGGCCCCCTCTGGCCAAAGGATCTTTATGTCATTTACTGACCTGGAGTTGGAGAACTGCTGCTCTTGTGATTACATCTCTGTGTACGATGGATCGTCTGTGCAATCTCAAATGCTAGGCACAATCTGTGACTTCAACAACGACACCTCTTTGGCTGCCTACCACTCCACCTCTAACTACATGACAGTTCTCTTTCGCTCTGACCAATCAGTGGTCAGCAGGGGCTTCAGGGCCATGTTCAGCAGCTCCCTCGCATCAAACCAAGGTCGAGTGGACTGCTCCTCAGACAACATGAACATAGTGATCCAGAGATCCTACCTGCTCTCAATGGGCTACGATGGTAACAATCTGTACCTGAACGACCAGCATTGTAGACCTCAGGTCAACAGCTACCAGGTGGTGTTCAGCTTCCCAATCAATACCTGTGGGACCCAGCGAAAGTTTGAGAAAGGGAGAGTGGAGTACATCAACGCCGTCCGTGCCTACCGGTCCGACTCAGGCGAGATTACGCGGCAGTCTCATTTTCTGCTGCACGTGGAGTGTCGCATGGAGCAGGACACCATGGTCCAGGTTATGTACAAGACCAACGATGAGGGTAACGGTACCATAACAGGCACAGGCAGATTCAACAGCACCATGGCCTTCTTTACAAACAGCAACTTCTACAGTGAGATAACCCAGACTCCATACAAGATTACCCTCAACCAGAACATGTACGTCCAAGTCCGCCTGAGGAGGTCAGACAGCAGTCTACATCTGTTCCTGGACACCTGTGTGGCCTCTCCCTCACCTCATGACTTTCAAACCAGATCATATGACCTGGTGCGCAACGGATGTAGGAGGGACCCCACCTACTACTCCTACACCTCTGGTACCAGTAGCTACGCCCGCTTCACCTTCCAGGCTTTCAAGTTCCTGCGAGCTGATGAGTCAGTGTACCTGCAGTGTAAAGTCACCATCTGCCAAGCTTCTGACTACAACTCCCGCTGCCGCCGAGGCTGCCGCACCCGCAAGGCCAGGGACCTGGGATCCTCCCAGGGGAGCCACACCCTGATCCTGGGCCCCATCCAGCTCAAAGATCTGGAGAAGCCAGATGAGAAAGTGGCTGAGAAGGAGGAGATCCAGGCTAAGGTGGAACCTTAAGACTAAGCTGACCAGCCTCAACTAACTACTCTAATCATTAATACTATAATTCTGATTAATTTCACCTGAGGCAATGAAGTAGCCAATATTCCCTGCTAATGTACACTATAATCTTGTATCGCTTTCCTACTTTGGCTAAATGATTAAAAGCATTCAACAGACAA

Function

GO: NA

KEGG:

id description
K24793 CUZD1; CUB and zona pellucida-like domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2115677 lncRNA downstream 9169 26446243 ~ 26447841 (-) True G1848195
TU2115661 lncRNA downstream 29503 26427254 ~ 26427507 (-) True G1848183
TU2115655 lncRNA downstream 38848 26417901 ~ 26418162 (-) True G1848177
TU2115638 lncRNA downstream 59223 26387522 ~ 26397787 (-) True LOC110502502
TU2115506 lncRNA downstream 86828 26369904 ~ 26370182 (-) True G1848039
TU2115685 lncRNA upstream 2075 26467965 ~ 26468202 (-) True G1848203
TU2115745 lncRNA upstream 78918 26544808 ~ 26546370 (-) True G1848261
TU2116177 lncRNA upstream 111394 26577284 ~ 26587239 (-) True G1848675
TU2116208 lncRNA upstream 145326 26611216 ~ 26624631 (-) True G1848704
TU2116917 lncRNA upstream 787077 27252967 ~ 27274918 (-) False LOC110502513
XM_021580561.2 mRNA downstream 50456 26403613 ~ 26406554 (-) True LOC110502503
XM_021580559.2 mRNA downstream 58877 26394233 ~ 26398133 (-) False LOC110502502
XM_021580558.2 mRNA downstream 226464 26226630 ~ 26230546 (-) True LOC110502501
XM_021580553.2 mRNA downstream 509024 25939726 ~ 25947986 (-) False LOC110502496
XM_036960214.1 mRNA upstream 808662 27274552 ~ 27309747 (-) False LOC110502513
XM_036960215.1 mRNA upstream 808662 27274552 ~ 27310171 (-) False LOC110502513
XM_036960216.1 mRNA upstream 810140 27276030 ~ 27309744 (-) False LOC110502513
XM_021580585.2 mRNA upstream 958002 27423892 ~ 27435842 (-) False LOC110502517
XM_021580587.2 mRNA upstream 958002 27423892 ~ 27435842 (-) False LOC110502517
TU2114269 other downstream 1016623 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 3111239 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 3223587 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 3238740 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 5085211 21345514 ~ 21371799 (-) True G1841959
TU2118048 other upstream 1609035 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 2458849 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 4685719 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 4685719 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 4751707 31217597 ~ 31218171 (-) True G1854905

Expression Profile