RNA id: TCONS_00004943



Basic Information


Item Value
RNA id TCONS_00004943
length 1294
lncRNA type lincRNA
GC content 0.38
exon number 4
gene id XLOC_002660
representative False

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15082410 ~ 15086297 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GTCTGATTGTAAAGAATGTGATATTGTCTGAACTTCTGCTTTTTGACAGTATTCAAATCATAATGAATTGATGTCGAAATTTAATTAGCGCAGTTATTGCTTCACTGTGGCCACATGTGTGGTAAAATCTGATTGGGTGGATTTTTGTTGTTCTTCCCATAAGGTATATAGATGTACTTAATGCAAGATTAAAGCAGAGCTGATCGTTTCCCACTTGATGGGTAAAACTTAAATATGAAGACAGTCATTGTAGTGTTGTCCATCCTGGGCCTTTGTCTCGGCGCTCCTGTGGAGCATGATATGGATAGAGATAATGAGCAAGAAATTGATGAGGGTCAGCAATTTGCTGGTTCTCCGCTGGATCAGACAGACCCCATTACCAGGACAATCCTCTACCCTGTTCCAAGAGCTGATGGCTTCCTGGGAAACCTTTTTATGAACCCTTTTCTAAACCCATATGGATCTCACCTTTATTACCCGCAGTACCCACTGTACTCAGGTTACCCAACTTACCCACACTACCCTGCCTATTCACTGCCACCTGTTATAATACACTTGCCTCAGAGAAACCCCTGAAACTGGCAAAATCGTAACGTCAATTGCATTATCTATACTTCAAACAGACAAATATTGTCTTTATTTTGCGTAATGCtatgacatatttgatttcaATTTATCAGACTTTACACTTGTGTTACTTTGCcttttttcttagtttttcttatattttactATTGTTTCTTATTATATTCACCTattcctgtttgttttctccACTGTATTTAGTATTGCAAACtcatttcccccccaaaaaaaatatttagagcaACATATATCTGATTCCTTCAGCCAGAttaatcaaacaaacacaatatCTCTATTTCCAAGATGGTGTCAACTAGTGTGAGTATAGCAAAGTGATGTGGAAAAGAGCCAGTACATGTGGAATTTCTATGTTGCACAAATTGTACAAATGTGCAATACTCAATAAATATACTATACTATGTTTGgttatgtgggtgtgtgtgttctCAACATTTGCTTGTTTAATAATTTCTAGACAGACCACTGTAAAGCAAACATTACAAAACTGaagatatattacatatatatggGCAATattacacaagtagcagtgcgatatggctgtatatcagcactggtgagaggcgtgcgttggctcgaGTCAGCAGGCCGAGTGCTTTGGTTCCCCTCACCAATGCCGGTATACAGCCAtttcgcactgctacaagtgtgatattgcgcttatacactctcagaaagtacaaggtcc

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194264

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00006013 lncRNA downstream 39662 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA downstream 47450 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00006012 lncRNA downstream 1780437 13298839 ~ 13301973 (-) True XLOC_002642
TCONS_00006011 lncRNA downstream 3183835 11895373 ~ 11898575 (-) True XLOC_002638
TCONS_00004895 lncRNA downstream 3749297 11331969 ~ 11333113 (-) False XLOC_002632
TCONS_00004955 lncRNA upstream 536601 15622898 ~ 15631358 (-) False XLOC_002664
TCONS_00005752 lncRNA upstream 630442 15716739 ~ 15724104 (-) True XLOC_002666
TCONS_00004964 lncRNA upstream 850769 15937066 ~ 15963981 (-) False XLOC_002668
TCONS_00005753 lncRNA upstream 850769 15937066 ~ 15963985 (-) False XLOC_002668
TCONS_00005754 lncRNA upstream 850769 15937066 ~ 15963986 (-) False XLOC_002668
TCONS_00004940 mRNA downstream 28796 15050469 ~ 15053614 (-) False XLOC_002659
TCONS_00004941 mRNA downstream 28903 15052698 ~ 15053507 (-) True XLOC_002659
TCONS_00004938 mRNA downstream 33629 15046837 ~ 15048781 (-) False XLOC_002658
TCONS_00004939 mRNA downstream 33629 15047909 ~ 15048781 (-) True XLOC_002658
TCONS_00004936 mRNA downstream 144175 14936045 ~ 14938235 (-) False XLOC_002655
TCONS_00004944 mRNA upstream 34414 15120711 ~ 15128771 (-) True XLOC_002661
TCONS_00004945 mRNA upstream 235225 15321522 ~ 15340412 (-) False XLOC_002662
TCONS_00004946 mRNA upstream 235225 15321522 ~ 15340450 (-) False XLOC_002662
TCONS_00004947 mRNA upstream 235231 15321528 ~ 15340390 (-) False XLOC_002662
TCONS_00004949 mRNA upstream 251136 15337433 ~ 15340362 (-) True XLOC_002662
TCONS_00004937 other downstream 142064 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004928 other downstream 350011 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 594256 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004920 other downstream 1150714 13931569 ~ 13931696 (-) True XLOC_002648
TCONS_00004919 other downstream 1470162 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004948 other upstream 251013 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004954 other upstream 531919 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004975 other upstream 1991136 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004978 other upstream 2018001 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 2059522 17145819 ~ 17156675 (-) True XLOC_002679

Expression Profile


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