RNA id: TCONS_00051885


Basic Information

Item Value
RNA id TCONS_00051885
length 1827
lncRNA type antisense
GC content 0.39
exon number 4
gene id XLOC_026631
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 38525979 ~ 38529416 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggaaatgtttctgattcacgcatgcaaattcatcttcagatagtgtctttatagcaatgtgcatgcagtagattgctcagattacattgggaaaacaggcgactgctgcaaattgtgctttaatgtttagctggtcaaatgtatggtatggaaaccttatatacctgctagatgaacccgtctcatacagctgccattgcaaggctcagacactttgtagagaggaatttaacacaactgcctctaggagtcgccaatggaaataaaacagagacgcacaaaaaatgtgcgtacgcctgccagaaagctgccgtgaacccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaataatgttgatagaacgtttaatgttgaacggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatatggttgaaaatacgtcagtagttgctttaatgttgaaacaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacattttttttatcatggtctgtatgttgaattaacgtcatggcttcacccaatattcaacatgtttggttaccatggtatcggaggactcggcgcacgcggccacgcgcagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagagacatgtaacgtactccagagacgcactaacttgcacagcattgaatggaaaaggctttgcccatgtccagttgaggggCATCAAGAACACGCAGAAAGCCTACCTggacagactgcagttctgctactccatgccaaggcttttgtatggatgtcttgactactactgtgttctctaaaggtttttggaagctccatttgaggacatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacatctattgcagtcctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacggtgttctctaaaggtgtaactggagcaaaacaacagcacccgttacagtgaaatttgtgttcataaaagatagtgatatatgtgtaacaggtccagaacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtgtgtgcttactgctcgtagtaaacacacatgctgatctgatgcgggagagatatacgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcacatagaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggagcatttaatcaaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtaattaataacagaacctatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccatgtgaacatgcaatttttatgatactaataataataatggaataacaaattgcttttactgttgtgtttgtgagagagaatattctacacattttcttgatgatttactgaaatatttgtctacatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatgcaaaaaaaaaaaaaactactaaata

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155567

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051884 lncRNA downstream 740139 37777841 ~ 37785840 (-) True XLOC_026630
TCONS_00051882 lncRNA downstream 752251 37771677 ~ 37773728 (-) True XLOC_026629
TCONS_00053076 lncRNA downstream 766045 37757463 ~ 37759934 (-) False XLOC_026628
TCONS_00051874 lncRNA downstream 825997 37678156 ~ 37699982 (-) True XLOC_026627
TCONS_00051872 lncRNA downstream 855804 37669163 ~ 37670175 (-) False XLOC_026627
TCONS_00053077 lncRNA upstream 442019 38971435 ~ 38973341 (-) False XLOC_026636
TCONS_00052479 lncRNA upstream 442019 38971435 ~ 38975355 (-) False XLOC_026636
TCONS_00053078 lncRNA upstream 442019 38971435 ~ 38975614 (-) False XLOC_026636
TCONS_00053079 lncRNA upstream 444844 38974260 ~ 38975698 (-) True XLOC_026636
TCONS_00052480 lncRNA upstream 582898 39112314 ~ 39113547 (-) True XLOC_026637
TCONS_00051883 mRNA downstream 740106 37776489 ~ 37785873 (-) False XLOC_026630
TCONS_00051880 mRNA downstream 752179 37766473 ~ 37773800 (-) False XLOC_026629
TCONS_00051877 mRNA downstream 765983 37757780 ~ 37759996 (-) False XLOC_026628
TCONS_00051879 mRNA downstream 766606 37757921 ~ 37759373 (-) True XLOC_026628
TCONS_00051876 mRNA downstream 766832 37757393 ~ 37759147 (-) False XLOC_026628
TCONS_00051886 mRNA upstream 118571 38647987 ~ 38692920 (-) False XLOC_026632
TCONS_00051887 mRNA upstream 121487 38650903 ~ 38683327 (-) True XLOC_026632
TCONS_00051888 mRNA upstream 176009 38705425 ~ 38745598 (-) True XLOC_026633
TCONS_00051889 mRNA upstream 233475 38762891 ~ 38783951 (-) False XLOC_026634
TCONS_00051890 mRNA upstream 236116 38765532 ~ 38777553 (-) True XLOC_026634
TCONS_00051881 other downstream 752179 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051873 other downstream 826028 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051859 other downstream 1450166 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051856 other downstream 1557986 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051846 other downstream 1769830 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051892 other upstream 383962 38913378 ~ 38918717 (-) False XLOC_026635
TCONS_00051900 other upstream 708680 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051909 other upstream 1120029 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051914 other upstream 1427942 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051921 other upstream 1559269 40088685 ~ 40088801 (-) True XLOC_026657

Expression Profile

//