RNA id: XM_021580571.2


Basic Information

Item Value
RNA id XM_021580571.2
length 3969
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110502508
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26471360 ~ 26529362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTGGACGCTAGATGGGGCATAAACGCATTATTTGACATAGTTAGCCTACGCTAACGGCAGTCTGTTTGCCCCAGCACAGGACGAGGGAATGGGCTAGGCTGAATCAAGCACTCCTGCGTGAAAACAACTTGTGCTCTCCTCCATCtaaccccttctcctcctctcacctggcCCCTGGGTCAGGGAATGTGCCAGCCCCGGAGATGCCTTACGTGGATCGGCAGAACCGGATCTGTGGCTTCCTGGACATCGAGGAAAACGAGAGCAGTGGGAAGTTCCTGCGCCGCTACTTCATCCTGGACACCCAGCCGGGCAGCCTGGTGTGGTACATGGATAACCCTCAGAACCTGCCCATTGGTGCGGACTGTGTTGGCTCACTCAAACTCACATACATCTCCAAGGTCAGCGACGCCACTAAGCAAAGGCCAAAGGCGGAGTTTTGCTTTGTCATCAATGCTGGCATGAGGAAATTCTTCCTCCAGGCCAATGATCAGCAGGACCTGGTGGAATGGGTGAATGCTCTCAACAAGGCCACCAAAATCACTGTGCCAAAGTCATGTAATGCCCAACAGAATGTGGAGAACCAGAAAGCTCTTCTGGACATCCTGGGACCCAGGAAGCAGGTCTCCTACAGGACTGACATCATTGGGGGAGTTCCTATCATCACCCAGACGCAGcaggaagggggagagggcCAGGAGGGTTCGGAGCGTGAGTTGCTGCGGAGGTCGTACAGCCAGCTGCCATACTTCCTGGGCAGGCCGACCCAGGACCGGGCGGTCATCAAGTCTGGATACTGTGTGAAGCAGGGAGCTGTGATGAGAAATTGGAAAAGGAGATATTTCTTACTGGAGGATAACACCATGAGTTACTTCAAATCAGATCTGgaGAAGGAGCCTCTGAGAATGATTCCATTGAAGGAGGTCCACAAAGTTCAGGAGTGCAAACAGAGTGACATCATGATGAGGGATAATCTCTTTGAGGTCGTCACCACTTCTAGGACTTTTTACATCCAGGCTGACAGTCCAGAGGAGATGCACAGCTGGATCAAGGCTGTCTCTGGTGCTATCGTAGCCCAGCGGGGACCTGGGAGATCTGCAGCCACAGAGCACTGTGGCCGTTCCTCCCCTTCCACATTCTACCGCAGCCAACCGGGGCCCCCCTTCCCTCGCTCGCCCATATCTGCAGTGCCACCCTACCCAGGGTGCCCTTCTGTCGCGGGCAGTGCACGCTCGGAGCCTTGCGTGGGACAGCGAGCACTTCATGAGCCTCCTGCCGCGACCCAACCACGCCCGACTGTCCCTGCAGGAGACACGCCTTTCCAAGTGACCGCCGACACTGACCTCGAGTCGCCATGGAGACGGCGCAGCAGCTTCGAGCCCTACCCACCTGAACTGCCCCTTGACCTGGACGCTGACGACTTGCCGGTCAGCGAAGTCTGACCCATGAACTACccccacactaccccataacCTGGCAGAGGGGGTGGGCTACAGAGGAGAGGCTGTATGACAACGGGGGAAATGAGAAGAATGCTTTTGAATATCTGTGAGTAGCTGAACAGTGGGCCGCTTGTCTCATTTCCACAAAACTGAACAGAAGTCATCTGGATGGAAATGACAGAAAGCAGGCACTGAATTCCAAGCCAAAGTTGGTCTGTATAATGTGTCTGACTTCCAACCATCTCAACCCCCTGTTCGTGAAGCTGTTAATCTACCCCAGCTAGTCAACCCTAGTCACATTAGAGTTGGAGGTCACTCAGACAAAGAGACAGGGGGGTTCTGTTCTCACGTTTTCATTGTTAGGCATCTACTCAGTGGTCAAGGCATGTGGACACACATGATGTCCTGGAATCCCTGGAATCCGCTGTCTCTGTGTGGGCTGGGAGGGTGAGATTCACACTGAACTCTACACCAAAGATTCCGCGCTATTTGCCATTGTCTCCCACCTGCTTGCTCTGTTCTTATTTATTTAATAGGGTTAATTCAGTTTAGAAAACGTTTTTATGTTGATTTAAAATATACACACCGAGTGTATGAAACAtgaggaacaccttcctgatattgagtttcatctccttttgccctcaaaacagcctcaatttgtcagtgcATGGAGTcgaaggtgtcgaaagtgttccacagggattctagcccatgttgactccaatgcttcccacagttattcagttggctggatgtcctttgggtgatggaccattcttgatacacacgagaaacccaacagcgttgtagttcttacccactcaaactggtgcacctggcaccgaCCATACcctattcaaaggcacttcaatcttttgttttgcccattctccctctgaatggcacacatacacaacccatgtctcaattgtctcaaggcttaaaaatcccttcatctacactgactgaagtggatttaacatgtgacatcaataagggatcatagcttttacctggattcacctggtcagtctgtcatggaaagagcaggtgttcctattgTTTTGTGCACACTGTATACCTGCAGCTCATGACTACGTGGACTCACACAGATTAATTCAGACATTTGTGAGGCTAATATGTTATACCACTCTGTGCCAAGCAAGCTAGTAAGTGGGTATTTTTAGGTCCAATGCAACATTTATCTCactatcaaataatttctgggtaacaattaagtgcaTTACTGTTAAAattacaaaaatagcttcttagcaaagggcTATTTCTCAATCAAGATTTTTGCTTGGTctttctgggagtggtctgagtgagggGCATAATTGTAAGACCCTAATGGAAGGGATATCTAACCTGAAAACCATCTGTTACTGGCAGAAGTTTGAAACTCCTTTTTGTTTGTAGTTTATTCATTTATACCATCACCAGGCAAGCCAATCTCATCCCACCAACTTGCATTATCTTCACAATTTcaaagtattattccaacctcatagtgtggaaatatatacaaaacacagaaaaatcatgtttttgactgcactgcgcCTTTATGGCAGCAAGCTATATTCTCTAATGACTGAATAGTTGTCAAGTAACATAGAACTAATCATACCTGTTCATTTCATGCATTCACTGTTGTTTTTATTGAACTAATGTTGTCTTTAGTTATTTGCTTTAATTTATGGTGTATGACCAAATTATTCTAACATACATTTTCTTTATCTGACGTTAAAACCTATAACAATCCCACTCTCCCCACACCATAGTATTACAGTTAGAAAGTTGTCGGTAAACGCTGTGGACTGGTACGAGAGGACTGTGCAGTTCTAAACCAAGCCATGTACATTTGCCTAATCCTAATCCTGCTGGGTACTGTAATGGGGTTTGGATTTGTACCAATAGGACTTCGGTGAGAGAGTAAGTTGTGCAACAGAGCGAGGTGGCTTCATTAAGGGACCAAAGTGAAAAGCAGTTACTTCTAGGGTAGGGATGGTCATTGTCTTGCAGAGGTGTTTAAATTAATACTCCTACCAACATGGCCACCAACAtgcttgacccctgacctcttcATACCTGTATACTGAACAGTGGCTTTAACCATTTTTTTTAGTGACTGCTGCCTGATTTTGTTTAGTTATGACAAAACTGACACTGACTGCTTTGTTCTGCGTGTGTGAAAACATGGTTTTCTTTGGTGACAGTTTGTTGGGATTGTTTTATTTTATGTTGTAATATGTGTTTAGATGTATATTTCCGTTTGAACTTCCCTGTGCCTGTATTGCAGGGTAGTGAAGGTCAACCCAACCATGCTACTCAATGGTCTTATTTCAATAGATCTCATTAGTGGTTCTGCAAAACCATACAGCTGCTCAAGTGCCTGCATAAATTCTATTAAAAAACAACGCTGTTCTAATCCATTTTGTCTTGTGTACTAGATTTTAATTGTCACTATTTATTATGTGGATGACTTGAAAGAAATAAACACTTAGAAAATGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2115565 lncRNA upstream 14491 26455367 ~ 26456869 (+) True LOC110502505
TU2115555 lncRNA upstream 44307 26426847 ~ 26427053 (+) True G1848088
TU2115541 lncRNA upstream 69512 26401634 ~ 26401848 (+) True G1848074
TU2115529 lncRNA upstream 85670 26385362 ~ 26385690 (+) True G1848062
TU2115512 lncRNA upstream 97519 26373557 ~ 26373841 (+) True G1848045
TU2115847 lncRNA downstream 193925 26703515 ~ 26707704 (+) True G1848354
TU2115895 lncRNA downstream 257381 26766971 ~ 26819859 (+) True G1848401
TU2115894 lncRNA downstream 266383 26775973 ~ 26907050 (+) True G1848400
TU2115903 lncRNA downstream 273792 26783382 ~ 26783783 (+) True G1848408
TU2116030 lncRNA downstream 459561 26969151 ~ 26971834 (+) True G1848531
XR_005039156.1 mRNA upstream 1746 26464542 ~ 26469614 (+) True LOC118943853
XM_021580564.2 mRNA upstream 14475 26441097 ~ 26456885 (+) False LOC110502505
XM_036960419.1 mRNA upstream 305613 26129692 ~ 26165747 (+) True LOC110502499
XM_021580557.2 mRNA upstream 305621 26129692 ~ 26165739 (+) False LOC110502499
XM_021580556.2 mRNA upstream 305622 26129692 ~ 26165738 (+) False LOC110502499
XM_021580565.2 mRNA downstream 5526 26515116 ~ 26545433 (+) True LOC110502507
XM_021580578.2 mRNA downstream 55696 26565286 ~ 26603085 (+) True LOC110502510
XM_036960054.1 mRNA downstream 185969 26695559 ~ 27146505 (+) True LOC110502511
XM_021580582.2 mRNA downstream 870669 27380259 ~ 27398338 (+) False LOC110502514
XM_036960762.1 mRNA downstream 871574 27381164 ~ 27398338 (+) False LOC110502514
TU2112363 other upstream 2117114 24326264 ~ 24354246 (+) True G1845108
TU2111249 other upstream 3124871 23345044 ~ 23346489 (+) True G1844044
TU2107504 other upstream 5686157 20781865 ~ 20785203 (+) True G1840558
TU2107244 other upstream 5954474 20358797 ~ 20516886 (+) False LOC110502429
TU2116734 other downstream 764748 27274338 ~ 27276259 (+) True G1849208
TU2117481 other downstream 1480684 27990274 ~ 27992963 (+) True LOC110502527
TU2117472 other downstream 1492285 28001875 ~ 28006214 (+) True LOC110502528
TU2118352 other downstream 1988433 28498023 ~ 28525237 (+) True LOC110502541
TU2119099 other downstream 2533771 29043361 ~ 29075998 (+) True G1851386

Expression Profile