RNA id: XM_036960054.1


Basic Information

Item Value
RNA id XM_036960054.1
length 3567
RNA type mRNA
GC content 0.54
exon number 16
gene id LOC110502511
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 26695559 ~ 27146505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACACCGTGAGCGCTGGAGAAggcgagagcgagagaaggaacGCCAGGCTCACTATCTGTCTTTGAATATAATAACGGGGTTCCCAACCTTTCTTCCCTTATTTCCCCTTCACTTTCCGTTTTAAATAGTTATTTCCCCTGTTATAAACATAGTTGTTACTTTTTCTTTAGTGTTTCCTGCGTTTTGAGGCTTCTGAACGATAGTTGTGATTTGCAGCGTTTTTGGACATTGTTTGTGGTGCCCCAATTGATTGTCGGACAGCCGAGAATGCTTGGATGAGCTGCTTCGCTAAAAGCCGGAGATGGAGTTGCTGTTGATCTGCCTTTCCCTGTGGATATTGCAATGCAATTCTGCCGGAGCGGACTCCATCATTCATATCGGTGCCATATTTGAGGAAAACGCTGTCAGGGATGACGAAATTTTTCAACTTGCCATTTCTGACCTAAGCCTCAACGACGACATTCTACAAAGCGAGAAAATCACCCACTCTGTAAAACGCATCGAGGCTAACAACCCATTTCAAGCAGTGCAGGAAGCCTGTGAGCTGATGAACCAGGGCATCCTGGCTCTGGTGACGTCTACAGGCTGTGCAGCCGCCAACGCCCTCCAGTCCTTGACCGACGCCATGCACATACCACACCTGTTTATCCAAAGGAACGGCGAGGGCACGCCACGCACCTCCTGCCACCTCAACCCCAGCCCTGATGGGGAGAGCTACACCCTGGCCGCTCGTCCGCCTGCTCGCCTCAACGACGTCATGCTGACCCTGGTCACTGAGCTGCGCTGGCAGAAGTTCATCATCTTCTATGATTCTGACTATGACATCCGTGGGTTGCAAACATTCCTGGACCAGGCGTCTCGGCAGGGTCTGGACGTGTCTCTGCAGAGGGTGGACCGCAATGTGAGCAGGGTGTTCACCAACCTGTTCAGCACCATGCGGACCGAGGAGCTCAATCGCTACCGGGACACTCTGCGGCGGGCCGTGCTGCTCATGAATCCCCGAGGAGCACAGGTGTTCATCCACCAGGCTGTGGAAACCAACCTGGCATCCAAGGACAGCCACTGGGTTTATGCCAATGAGGAGGTGAGTGACACAGAAATCATGGAGCTGGTCCACAGTTCGTTGGGCCGGATGACCGTCATACGGCAGATCTTCCCTCTGTGGAGAGACACCAACATCCGGTGCATGAGGAACAACCACCgcatctcctctctgctctgtgaCCCCCAGGAGGGCTACCTGCAGTCCCTGGAGGTCTCCAACTTGTACCTGTATGACAGTGTGCTGATGCTGGCCAACGCCTTCTACAGTAAGCTGGAGGACAGAAAGTGGCATAGCATGGCTAGTCTGAACTGCATGAGGAAGTCCACCAAGCCCTGGAATGGAGGCTGGTCTATGCTGGACACCATCCAGAAGAGACGGATCACCGGGTTAACAGGAATGATGGACTTCCGTGCCGAAGGTTCTAACTCCCACGTCCAGTTTGAGATCCTGGGGACCAGCTACAGTGAGACGTTTGGGAAAGATGTCAAGCGGttGGCGACTTGGGACTCAACTCGTGGGCTGAACGGTAGTCTAAAGGAGAGTCGGATAGAGAACGGCATGCAAGGAGTGACGGTCAAGGTGGTAACATTACTAGAGGAACCCTTTGTGATGGTAGCTGAGAACATTCTTGGGCAACCTAAACGCTACAAAGGTTTCTCCATTGATGTTCTGGATGCTCTGGGCAAGATCCTGGGCTTCAAGTATGAGATTTACCAGGTGGCCGATGGAAAGTATGGAACCCCTACCTTCAACGGCTCCTGGAACGGCATGATAGGAGAGCTTATCAGTAAGCGAGCAGACTTGGCAGTATCAGCCATCACTATAActccagagagggagagtgtggtgGACTTCAGCAAGCGCTACTTGGACTACTCTGTGGGGATTCTGATGAGGAAGTCTGAGGAGAAGATCAATATCTTCTCTCTCCTGGCGCCCTTTGACCTGGCCGTTTGGGCATGCATCGCAGCCGCCATCCCCGTGGTTGGTGTCATGATCTTCATCCTAAGGCGGGTCCAGTCGGTCCGTCCTGCAGGGGGACACCAGGCCACCTCTGTGTCCACCTCCCTCCAGAGCGCCATCTGGATTGTCTATGGAGCTTTTGTGCAGCAAGGGGGAGACTCCATCCTGGGTTCTGTGGCTCTACGTATCGTAATGGGCAGCTGGTGGCTTTTCACCCTCATTGTGTGTTCATCCTACACGGCCAACCTAGCAGCCTACCTCACGGTATCCCGCATGGACAACGCTGTTCGGACATTCCAGGACTTGTCCAAACAGATGGACCTAGCCTACGGAACAGTGAGAGACTCAGCCGTGTATGAGTACTTCAGAGCCAAAGGCACCAACGCTCTGGAGCAGGACAGCACCTTCGCTGAGCTCTGGAGAACCATCAACAAGAATAACGGACACGAACACTCAGTCTCCAGCCCATCTGAAGGCATCCGCAAGGCCAAGAGAGATTCCTTTGCCTTCCTGTGGGACATGGCTGTGGTGGAGTATGCTGCTCTGACAGATGATGACTGCACCCTGACAGTGACAGGCAACAGTATGAGTAGTAAGGGCTATGGCCTGGCTCTGCAACATGGCAGCCCCTACAGAGACCTCTTCTCCCAGAAGATCCTGGATCTGCAGGAGAAAGGGGACCTGGACATCCTGAAGCAGAAGTGGTGGCCCAGGAAGGGTCGCTGTGACCTGGACAGCCACTTGGAGGCCCAGCCAGAGGGCAGGTCCCTGAGGCTCCAAAGCTTCGCTGGGGTCTTCTGCATCCTGGCAGCAGGGCTGCTGCTGGCCTGCCTGGTGGCCGCCCTGGAGACCTGGTGGAGCAGCAACCGCTGCCGGCGTGAGCAGCCCAAAGAGgacaaAGAGGTGAATCTAGAGCAGGTCCACAAGCGTTTGAACAGCCTCCTGGATGAGGACATGGTGCACAAGCAGCTGCCGGGCCAATCTATCGAGATCTCTGCCCTGGACATCAGCAGCATGCAGCCCAGCCAGTCCCTGGAAGGCCTGCCTTCACGGGACCACTACCTGGGCCATCACAGGGAGTCGGTCTCTGTGACCACTTTCCTCCAGGAGGGTCAAGGAGCAGGAAGGACACTTGGCAGGGGCACTGGCAGAACCCTCCCCCTACCCCTCAGCAGCGCCACCATGCCCGCTATCCGCTGCAAACACAGGGCACCCAACGGGGGGCTCTGCCAACAGAGCCCTGTCAAGACACCAATGCCAAAGTCATACCAATCAGGGCCTGGAAGAACCATTCCAGAAGCCATTGATGTAAGCCATGGGACTTCAATCTGACTACTCAGCCTCAGCGCAATCACAGACACTCAAGCTCCGTTTATACTAGGTTCTAACATGCATCTTTTTTcctccacattctgattgtgcccacattttttgACAGGTGTAGATAATGGAAAGATGctttgtgatctgattgtgagcAGATGGCTATCTTACAAGTGTAGACGGATCTGGACAGTGAAACCATTTACGTCATCATTACACAACCCTCTGAAATCA

Function

GO: NA

KEGG:

id description
K05206 GRID1; glutamate receptor delta-1 subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2115565 lncRNA upstream 238690 26455367 ~ 26456869 (+) True LOC110502505
TU2115555 lncRNA upstream 268506 26426847 ~ 26427053 (+) True G1848088
TU2115541 lncRNA upstream 293711 26401634 ~ 26401848 (+) True G1848074
TU2115529 lncRNA upstream 309869 26385362 ~ 26385690 (+) True G1848062
TU2115512 lncRNA upstream 321718 26373557 ~ 26373841 (+) True G1848045
TU2116622 lncRNA downstream 33629 27180134 ~ 27182928 (+) True G1849101
TU2116652 lncRNA downstream 53282 27199787 ~ 27200000 (+) True G1849129
TU2116808 lncRNA downstream 250797 27397302 ~ 27397722 (+) True LOC110502514
TU2116832 lncRNA downstream 275699 27422204 ~ 27424989 (+) True G1849299
TU2116846 lncRNA downstream 302554 27449059 ~ 27456847 (+) True G1849304
XM_021580578.2 mRNA upstream 92474 26565286 ~ 26603085 (+) True LOC110502510
XM_021580565.2 mRNA upstream 150126 26515116 ~ 26545433 (+) True LOC110502507
XR_005039157.1 mRNA upstream 166197 26471360 ~ 26529362 (+) False LOC110502508
XM_021580573.2 mRNA upstream 185969 26471360 ~ 26509590 (+) False LOC110502508
XM_021580582.2 mRNA downstream 233754 27380259 ~ 27398338 (+) False LOC110502514
XM_036960762.1 mRNA downstream 234659 27381164 ~ 27398338 (+) False LOC110502514
XM_021580583.2 mRNA downstream 254408 27400913 ~ 27414490 (+) True LOC110502516
XM_021580593.2 mRNA downstream 288307 27434812 ~ 27448641 (+) False ecd
XM_021580591.2 mRNA downstream 289625 27436130 ~ 27448641 (+) False ecd
TU2112363 other upstream 2341313 24326264 ~ 24354246 (+) True G1845108
TU2111249 other upstream 3349070 23345044 ~ 23346489 (+) True G1844044
TU2107504 other upstream 5910356 20781865 ~ 20785203 (+) True G1840558
TU2107244 other upstream 6178673 20358797 ~ 20516886 (+) False LOC110502429
TU2116734 other downstream 127833 27274338 ~ 27276259 (+) True G1849208
TU2117481 other downstream 843769 27990274 ~ 27992963 (+) True LOC110502527
TU2117472 other downstream 855370 28001875 ~ 28006214 (+) True LOC110502528
TU2118352 other downstream 1351518 28498023 ~ 28525237 (+) True LOC110502541
TU2119099 other downstream 1896856 29043361 ~ 29075998 (+) True G1851386

Expression Profile