RNA id: XM_036960216.1



Basic Information


Item Value
RNA id XM_036960216.1
length 1134
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC110502513
representative False

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27252967 ~ 27310171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATTATTTCTTGAGTCCTCAGCTGAAGAAAGTGGTCGACTTTCTGTATTCTTTGTCCTTTGTTTTGCACCACATCATGGTACAACTGCAGTAAGATTCAGTTATTTAAAGACGGGCAATCAATTTTATGCAGTCTGTCTTTCTGATGTTGTCTCGGTTCATTAATGGCTTGTTTGAATAGTGTTGCCAAATATTTATGTCCCTTCCTTTCTTGCTCTGTTTGAAAGGGAAattgcgtgtctgtctgtgttatgtGGACGCTAACGGGATGTCCCATTTTGAACGCTCAGAGAGGGGGGGACGACAAGGTCACTGGAGGAGAAGGCAGCATCACTGGAATGGACCGGATCACTTCCACAATGACACCAGGGATCCAGTGTTCCAGCATTATGATGGTTATGCTGGCCCTGTGGGGTTCAGGGTAGGCCCCCGGCCCTTTCCTCCCGTAGGGAGACACAATGGACACACGGGGGCGCTGGACGAGCTCACACTCAAACATATGGCCCAGGACTGCAGCTCAGTGAAAAACCAGCTGCTTACACTCAAGAGTTTattacagATGGAGGACGGTGGCCCAGAGGTTGTTGAGGGCGGTGAAGAGGATAACAGCACGACCCTACAGTTGGAGGAGCTAATGAAGGAGGTGTGGAAGCTCAGGGAGGAGCTGAGGAATAAGGAGAGGACAATCGCTCAGCTCACACTACAGCAACAGCAGCTACAGCAACAGGGGcaTCCTCATGCTGCCCAGTCCGGGAGGGGTCACTGCCACAAGAGGACACAGTCACTCGGGGGGGACAGACGAACTCACCACGACAAAGCCACACAGACCTCTTGGAGAGGACAAGGACACAGCCAAGcgGGTTTGCTGCCCACCCCCTTCTTCTCCCCCGGGCAGGGTCTGCCCCGCACCAGCATGCCCCAGCGCAGACAGACCACAAATACAGCCTTCCAGCCCCAGCCACCACGAGCACCTCACCCAAGAAAGACTAGTAAAAACAGCCCACACCGAGGGCCACAGTGACCcccagagagggaggaggaccaGGGAAGATGGATCCCACTGCACAGACTCTGACCCACCCACTGGAAGCCTGGCCATGGGTGTGGACACTCCACCAGTGCCTGACCCAGATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2116917 lncRNA downstream 1112 27252967 ~ 27274918 (-) False LOC110502513
TU2116208 lncRNA downstream 651399 26611216 ~ 26624631 (-) True G1848704
TU2116177 lncRNA downstream 688791 26577284 ~ 26587239 (-) True G1848675
TU2115745 lncRNA downstream 729660 26544808 ~ 26546370 (-) True G1848261
TU2115685 lncRNA downstream 807828 26467965 ~ 26468202 (-) True G1848203
TU2116962 lncRNA upstream 7675 27317419 ~ 27317619 (-) True G1849410
TU2116968 lncRNA upstream 12609 27322353 ~ 27322830 (-) True G1849416
TU2117059 lncRNA upstream 126382 27436126 ~ 27523460 (-) True G1849493
TU2117091 lncRNA upstream 179567 27489311 ~ 27493373 (-) True G1849524
TU2117123 lncRNA upstream 245197 27554941 ~ 27555153 (-) True G1849555
XM_021580562.2 mRNA downstream 810140 26457010 ~ 26465890 (-) False cuzd1.2
XM_021580563.2 mRNA downstream 810140 26457010 ~ 26465890 (-) True cuzd1.2
XM_021580561.2 mRNA downstream 869476 26403613 ~ 26406554 (-) True LOC110502503
XM_021580559.2 mRNA downstream 877897 26394233 ~ 26398133 (-) False LOC110502502
XM_021580558.2 mRNA downstream 1045484 26226630 ~ 26230546 (-) True LOC110502501
XM_021580585.2 mRNA upstream 114148 27423892 ~ 27435842 (-) False LOC110502517
XM_021580587.2 mRNA upstream 114148 27423892 ~ 27435842 (-) False LOC110502517
XM_021580588.2 mRNA upstream 114148 27423892 ~ 27435842 (-) False LOC110502517
XM_021580589.2 mRNA upstream 114148 27423892 ~ 27435842 (-) False LOC110502517
XM_021580590.2 mRNA upstream 114148 27423892 ~ 27435842 (-) True LOC110502517
TU2114269 other downstream 1835643 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 3930259 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 4042607 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 4057760 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 5904231 21345514 ~ 21371799 (-) True G1841959
TU2118048 other upstream 765181 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 1614995 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 3841865 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 3841865 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 3907853 31217597 ~ 31218171 (-) True G1854905

Expression Profile