RNA id: TU2116920


Basic Information

Item Value
RNA id TU2116920
length 229
lncRNA type sense_over
GC content 0.47
exon number 1
gene id LOC110502513
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27252967 ~ 27310171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcatagttttgatgtcttcactattatcctacaatgtaaaaaatagtaaaaataaagaaaaaccctggaatgagtaggtgtttccaaacctttgactggtactatacgtCATACCTCCATTGTCTTTTCTCTGTGCAGGGTTTGCTGCCCACCCCCTTCTTCTCCCCCGGGCAGGGTCTGCCCCGCACCAGCATGCCCCAGCGCAGACAGAGTGAGTCACTACCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2116917 lncRNA downstream 5557 27252967 ~ 27274918 (-) False LOC110502513
TU2116208 lncRNA downstream 655844 26611216 ~ 26624631 (-) True G1848704
TU2116177 lncRNA downstream 693236 26577284 ~ 26587239 (-) True G1848675
TU2115745 lncRNA downstream 734105 26544808 ~ 26546370 (-) True G1848261
TU2115685 lncRNA downstream 812273 26467965 ~ 26468202 (-) True G1848203
TU2116938 lncRNA upstream 1610 27282313 ~ 27282533 (-) True G1849386
TU2116942 lncRNA upstream 3766 27284469 ~ 27284774 (-) True G1849390
TU2116949 lncRNA upstream 9397 27290100 ~ 27290326 (-) True G1849397
TU2116919 lncRNA upstream 11346 27292049 ~ 27292457 (-) False LOC110502513
TU2116915 lncRNA upstream 15331 27296034 ~ 27309880 (-) True LOC110502513
XM_021580562.2 mRNA downstream 814585 26457010 ~ 26465890 (-) False cuzd1.2
XM_021580563.2 mRNA downstream 814585 26457010 ~ 26465890 (-) True cuzd1.2
XM_021580561.2 mRNA downstream 873921 26403613 ~ 26406554 (-) True LOC110502503
XM_021580559.2 mRNA downstream 882342 26394233 ~ 26398133 (-) False LOC110502502
XM_021580558.2 mRNA downstream 1049929 26226630 ~ 26230546 (-) True LOC110502501
XM_021580585.2 mRNA upstream 143189 27423892 ~ 27435842 (-) False LOC110502517
XM_021580587.2 mRNA upstream 143189 27423892 ~ 27435842 (-) False LOC110502517
XM_021580588.2 mRNA upstream 143189 27423892 ~ 27435842 (-) False LOC110502517
XM_021580589.2 mRNA upstream 143189 27423892 ~ 27435842 (-) False LOC110502517
XM_021580590.2 mRNA upstream 143189 27423892 ~ 27435842 (-) True LOC110502517
TU2114269 other downstream 1840088 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 3934704 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 4047052 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 4062205 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 5908676 21345514 ~ 21371799 (-) True G1841959
TU2118048 other upstream 794222 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 1644036 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 3870906 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 3870906 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 3936894 31217597 ~ 31218171 (-) True G1854905

Expression Profile