RNA id: TCONS_00051887


Basic Information

Item Value
RNA id TCONS_00051887
length 1743
RNA type mRNA
GC content 0.51
exon number 16
gene id XLOC_026632
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 38647987 ~ 38692920 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCAGTCCTCTCTGCAGGAGGAGGGTTGCACGAGACGCTTGCCCTGCTGACCTCACAGCTGCGTCCAGATGCCAATCATAAAGAGGACATGGTCTTCCTCAGGGATGTTTTCAGTGAGAGGAGCCTCAGCTGCCTGATGAAGATTCATGAGAAGTTGCGTCAGTATGAGAAGCAGAGCCCCACCCCGGTTCTCCACAGTGCCTCCACGCTGGCAGAGGATGTTGCAGAGGAGTTGCAAAGTGGACCAATGAGTGTTGAGGAAAAAGAGCTGCTACATTTGCTGACATCTCCTCATCTCAAGGCGGTTTTGTCAGTTCATGACACAGTGGCACAGAAGAACTTTGACCCTGTGCTGCCTCCTCTGCCTGATGACTTTGAGGATGAACTAGACGAGGAGTCTGTCAAGATCGTCCGCCTCGTCAAAAACAAAGAACCACTGGGTGCCACTATTCGGCGGGATGAGTCCACAGGGGCTGTGATTGTGGCTCGTATCATGAAGGGAGGAGCTGCCGACCGAAGTGGCCTGGTGCATGTCGGTGATGAACTGAGAGAGGTTAACGGAAGCTCTGTGATGCACAAGAGGCCAGATGAGATCAGTCAGCTACTGTCTCAATCACAAGGTTCCATCACACTGAAGATCATCCCGGCAATAAAAGAAGAGGACAAGCTGCAAGAGAACAAGGTCTACATGAGGGCACTGTTTGATTACACTCCACTGGAGGACAAAGCCACACCGTGTCAGGAGGCAGGACTTCCTTTTAAACGTGGGGACGTCCTGCAGGTGGTCAGTCAGGATGATCAGACATGGTGGCAAGCCAAGAGAATTGGTGACTGCAATCTTCGTGCAGGACTTGTCCCATCCAAGCAGTTTCAAGAAAGGTGGAGCAGATATAACCCCTCTTTCCTCTGCTCACTCCCTGTCTCTCCCTGCTTGCCTCCTACAGAAGACTGTGACTGTGAGGGCTATTTCAATGGACAGTACATAGCTGGTTTAAGGAGAAGTTTCCGTCTCAGTCGAAAGGACCGTCGCGGATCTTCAGGAGAGGCTAATGTTTCTGATCAGAATGACACAGATTTCCTGACTTATGAAGAAGTGACACGTTACCAGCAGCGGTCCAATGAAAGACCTCGATTAGTAGTTCTCATTGGTTCTCTGGGAGCACGAATCAACGAACTGAAGCAGAAAGTGATAGCAGAAAATCCCCATCGTTATGCTGTGGCCGTACCCCACACCACACGACCAAAAAAGAGCCATGAGAAGGAGGGAGTGGAGTACCACTTTGTGACTAAGCAGGCCTTTGATGCAGATGCACAGAATAACAAATTTATAGAATACGGAGAATATAAGGAGAATCTGTATGGGACCAGTATAGAGGCCATCCGCTCGGTTCAAGCCAAAAACAAGATGTGTCTTGTAGATGTACAGCCAGAGGCTCTGAAAGCCCTGCGAACAGCTGAATTTAAGCCTTATGTCATTTTTGTGAAACCGAAAATCCCAGAGAGCCGCAGACGCCGCAGTGCCGCCACATCGCCAGGAGGAGGAGAGCACGGCAGAATCACAGAGGAGGACCTACAGGAAATGCGTCTGTCGGCGCAGCAGATCGATCAACAGTACGGTCACCTCGTGGATCGGGTCCTGATCAAGGAGGACACTGCCAGTGCCAGCACAGAACTACGTAGCATCCTGGAGAGGTTGGAGAGGGAGACTTTTTGGGTTCCTATTAGCTGGGTCAGACCCTAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-555 Orthologous to human MPP3 (membrane palmitoylated protein 3).

Ensembl:

ensembl_id ENSDART00000179781

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051885 lncRNA downstream 121487 38525979 ~ 38529416 (-) True XLOC_026631
TCONS_00051884 lncRNA downstream 865063 37777841 ~ 37785840 (-) True XLOC_026630
TCONS_00051882 lncRNA downstream 877175 37771677 ~ 37773728 (-) True XLOC_026629
TCONS_00053076 lncRNA downstream 890969 37757463 ~ 37759934 (-) False XLOC_026628
TCONS_00051874 lncRNA downstream 950921 37678156 ~ 37699982 (-) True XLOC_026627
TCONS_00053077 lncRNA upstream 288108 38971435 ~ 38973341 (-) False XLOC_026636
TCONS_00052479 lncRNA upstream 288108 38971435 ~ 38975355 (-) False XLOC_026636
TCONS_00053078 lncRNA upstream 288108 38971435 ~ 38975614 (-) False XLOC_026636
TCONS_00053079 lncRNA upstream 290933 38974260 ~ 38975698 (-) True XLOC_026636
TCONS_00052480 lncRNA upstream 428987 39112314 ~ 39113547 (-) True XLOC_026637
TCONS_00051883 mRNA downstream 865030 37776489 ~ 37785873 (-) False XLOC_026630
TCONS_00051880 mRNA downstream 877103 37766473 ~ 37773800 (-) False XLOC_026629
TCONS_00051877 mRNA downstream 890907 37757780 ~ 37759996 (-) False XLOC_026628
TCONS_00051888 mRNA upstream 22098 38705425 ~ 38745598 (-) True XLOC_026633
TCONS_00051889 mRNA upstream 79564 38762891 ~ 38783951 (-) False XLOC_026634
TCONS_00051890 mRNA upstream 82205 38765532 ~ 38777553 (-) True XLOC_026634
TCONS_00051891 mRNA upstream 229230 38912557 ~ 38915998 (-) False XLOC_026635
TCONS_00051893 mRNA upstream 230942 38914269 ~ 38918697 (-) True XLOC_026635
TCONS_00051881 other downstream 877103 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051873 other downstream 950952 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051859 other downstream 1575090 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051856 other downstream 1682910 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051846 other downstream 1894754 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051892 other upstream 230051 38913378 ~ 38918717 (-) False XLOC_026635
TCONS_00051900 other upstream 554769 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051909 other upstream 966118 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051914 other upstream 1274031 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051921 other upstream 1405358 40088685 ~ 40088801 (-) True XLOC_026657

Expression Profile

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