RNA id: XM_021580583.2


Basic Information

Item Value
RNA id XM_021580583.2
length 3293
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110502516
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27400913 ~ 27414490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACtctgaacacacatacacacacactgcacacgtGTGCCTACCTCAGTTTGATTTGTGCTGCTCACTGAGATCTGAACTGGACTGGAGAAGAGACATTGGAGAGGGGGGGAAAAACTAGAGATAATAtaggagaagaggatagagaagagaagagagagaagcttCACTCACAGACGCTGACATTCACATAGCAATCACAGATCTTGTAGGACTTCGTATGGGGTAAGGCTCCACATGTGACTGAGAGGGACGTACAGATACCCAATACTGTGCTTTGGGACTTGACACCACACTGGGAGTTGTGCTGAGGCAGCCGGACACCTACTAAAGCAGAAAGCAAGCTCCAGGGGAGGGAAAGGGGCATCCAACAACAACCTGTGTTGTTTGCTCGAGCTCCTCCTCCCGTCCATCTCTTATCCTCCTTccgtccatctctcctctcatccctcataTTCTGCTCTGGAGTGGGAGAGTCTGTCTGCACTGTGAGTCCCTGGGAGACGGCAGAGTGTTGACAGTGTGAATGATGGCAGCAATGGCCCTGTCCTGGTATCTCTGCCTGGCCGTGACTCTCCTCTGTGGCCCCTCCTGGCCCCAAGGACACTCGGCTCTGGCCCCTGAGAATGAGGTGCCACTCCGCCCCACCGCCTGGCTGCCTGATGGAAAGGTCACCTCCATACATCTGCCCAAAGGACGCACCCggagACTGTACTTCACATTGAAGAAGAAGGTTGTGATGATGTCTGTGACCGTCAGTCCCTGTGACCTCCCCATCGAATGGACCCTCGCAGCCCGAACCCTGAAGGACAAACCGCCTAAAAGTCCACACTGGAGTACCAAGAAGAGTATGCCAGAGGTGTGGTGGAGAGGGCCTGGAACTGAAGCCAAGATACACACCTACACTGGCAATGCCATGGACACCTACACAGGTCCTTCCTATGCCCCAGCATCTATCTACATCCTCAGACTGCGCCCCAAGGACCAGGACACCAGGGCTACCATGTACCTCCATCAGGGCTCTGGGCCCTCAGGGGCCTTCCCGGAGCTTCCCTCTGACCCCCATGTCCACACCCTGGGTGTAGGAATGACCAGTGTCACCCTCAGCTGGGGCCCCAGTACCTCTCTCACAAGACTGCCGCACACCCAACGCAGCTATGACTACTGTGTCCTTGTCAACCGCAAACACAACTACCGCAACCTCTGTGCCGCCCGGGAGGGCATCAGGAAAGAGCAGGAGAAAGACAAGAAACGGCAGAAGAAGGACAAACAAAGGAAAGTAACTGTGTGGCCCATTCTCAAAAActggtggtggcagcagtgggATGCTGAAACAGATCTCCGGTCACCTGCTGCTCTCCGTGACCAGCATGATGATCTCCAATGTGTTTGTAAGGGAACAGAGAGCGTGTGCACTGTTTCAGAGCTTGTCCCCGACACGCAGTACTACTTTGACGTCTTTTTGATTGACAGGCTAAATGGAACCAGTGCAGCATATACTGGAACGTTCGCTCAAACACATGAGGAGGCCCGACCAGCTATCACACCACTCAGGGAAGGGGAGCTCCGGTGGGTGACCTTCCAGGATGGAGGCTCAACCTCTGGGGAGTTCTTTAGCTTCCGTCCCCGGGGTTGGCAGCAGAGTGGCCTGCTCACTCTCCAGAGCTGCGGAAGCAGTGAGAAGATCAAGGTCACCATCTCCAGCAAGGGCCAAGAGCTTAGCTCCCAGGCTGTGGGAGAAGACTTGGCTCAGATCTGGCTCCAGGGCAGCCCCTCCTACCTCatccacctggagagagagggaactgcgCCCCCCAGACAAGCTGCTCTAGGGGCACTGAAGGCCTCTGTTAAGATGCAGGCATCCTCTGCTTACCATCGTCAAGGGGTACCTTCGCTCCCCACCACCCTGCAGATTAAGTCTTTCAACAGGCTGAGGAGCTGTGACTCCATCACCCTGGCCTGGATGGGCACAGAGGAGAGGAGCCTATACTGCGTGTACCGCCGGAGGCTGGGTAAGGGCGAGAAGGGAGGTACGGCACCCTGCCTGGGGCCTGAGTCACGGTCGGACACTGAGAGAGTCGTGTGTAAATACTTCCAGGAGCTAAACCCTCGGCGGGCTGTCACGACGGCCGTGATCAGGGGCCTGGAGCCTGGGGTGGCCTACATGTTTGATGTCTATCTAATGAGACGCTGGGGGATCCCCATAAAGTACAGCAGCAAGACAGTGAGAACCAGGAAGGAGTGCTGAGCTGTTGCCACCTCCTAGTCTCGTAGTCTGCAGCAGCATTGGACTCAACAAAGAGGTGATTTACAAAGACTTACCATAACAAAGCCATTCTACTATGAGGGAGACTGTTAATAATTGTGGTACACCCTCCGAAGAGTGGTCGCATTTGAACACTGGTACCCATGGATTGGGTAGGAGAAGCAGAGGGGGGACCGCACACCAGCAAAATTAATTCCATTACAGTAACCTGCTGTGCTTTTTGTCTTTTTGTTTATAGTTGTGCCAGTTGTCCAAGTACTTATTCTGAGTCTGAGTACAAAGGAGGATAGAGGTTTTTGATGACAAAGAATGTCAGCAAAGACTTTGCCCAAAAATATGCAACAGAAACAGATGGAGCTTTGATCGTACTTTACAATGGGGATAGAGAACGTATGGCAAGATCCTACAATATAGTATATATTTAGTGCTGCATTGTTTTGTTCTATATTCTACAGGCTTAAAACACAGATGGGGTAATCTATTGATACTTAGCGCAAAGTCCGTGTGTAGGCTATCTTGTGTTCTGCTTTCGCATGAAGCAGGTAAAATGAGCTAGCGACTAGCGTCATTGTCTTTGATGTATTTTAATTGTGCTATGCTTAAAATGCCCCAATAAACACATTAGTATCTGTATCTCGGTATCAACATCtaataaaatataatattttgtTTGACTCTTTGCTGACAGTTAGTTGAGAAAATGACTGAATTGAGAAATCAATGTGACCCTAATGTTAACACTTGCATTTATTTATCTCTACTTGGATGATTACTACAAAACTAAAGAAAACAAATGAAAATCATGATTGCCTAGCAGCCCTACCTGCTTCAACAGACAGAATGGGTGGTCATCAGCCTGTGATATCAGAAAGTCCTGATTCCACAAAACACACTAAAAAAGTAACCAATACGAGTGCGTTTTTGCATCGACGTAAGCATGTTTTCGTTAAGCCTGTTGCATGCTTCCCAGTCGAAACAGTTTGTGCCTATATTATGCCTAAATTAAAATGTGTGatgtttttgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2116808 lncRNA upstream 3191 27397302 ~ 27397722 (+) True LOC110502514
TU2116652 lncRNA upstream 200913 27199787 ~ 27200000 (+) True G1849129
TU2116622 lncRNA upstream 217985 27180134 ~ 27182928 (+) True G1849101
TU2116030 lncRNA upstream 429079 26969151 ~ 26971834 (+) True G1848531
TU2115894 lncRNA upstream 493863 26775973 ~ 26907050 (+) True G1848400
TU2116832 lncRNA downstream 7714 27422204 ~ 27424989 (+) True G1849299
TU2116846 lncRNA downstream 34569 27449059 ~ 27456847 (+) True G1849304
TU2116869 lncRNA downstream 62742 27477232 ~ 27477737 (+) True LOC110503096
TU2117126 lncRNA downstream 144349 27558839 ~ 27559542 (+) True G1849558
TU2117133 lncRNA downstream 149371 27563861 ~ 27564082 (+) True G1849565
XM_021580582.2 mRNA upstream 2575 27380259 ~ 27398338 (+) False LOC110502514
XM_036960762.1 mRNA upstream 2575 27381164 ~ 27398338 (+) False LOC110502514
XM_036960054.1 mRNA upstream 254408 26695559 ~ 27146505 (+) True LOC110502511
XM_021580578.2 mRNA upstream 797828 26565286 ~ 26603085 (+) True LOC110502510
XM_021580565.2 mRNA upstream 855480 26515116 ~ 26545433 (+) True LOC110502507
XM_021580593.2 mRNA downstream 20322 27434812 ~ 27448641 (+) False ecd
XM_021580591.2 mRNA downstream 21640 27436130 ~ 27448641 (+) False ecd
XM_021580592.2 mRNA downstream 21642 27436132 ~ 27448641 (+) False ecd
XM_036960063.1 mRNA downstream 22505 27436995 ~ 27448641 (+) False ecd
XM_036960064.1 mRNA downstream 22509 27436999 ~ 27448636 (+) True ecd
TU2116734 other upstream 124654 27274338 ~ 27276259 (+) True G1849208
TU2112363 other upstream 3046667 24326264 ~ 24354246 (+) True G1845108
TU2111249 other upstream 4054424 23345044 ~ 23346489 (+) True G1844044
TU2107504 other upstream 6615710 20781865 ~ 20785203 (+) True G1840558
TU2107245 other upstream 6884027 20492027 ~ 20516886 (+) True LOC110502429
TU2117481 other downstream 575784 27990274 ~ 27992963 (+) True LOC110502527
TU2117472 other downstream 587385 28001875 ~ 28006214 (+) True LOC110502528
TU2118352 other downstream 1083533 28498023 ~ 28525237 (+) True LOC110502541
TU2119099 other downstream 1628871 29043361 ~ 29075998 (+) True G1851386
TU2120344 other downstream 2604000 30018490 ~ 30025046 (+) True G1852590

Expression Profile