RNA id: XM_036960064.1


Basic Information

Item Value
RNA id XM_036960064.1
length 2396
RNA type mRNA
GC content 0.52
exon number 14
gene id ecd
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27434812 ~ 27448641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcttcgctGAAgattctgtcaggttggatgggaagcttTGCTGCACAGGGGGTTCAAGTCGGTACTGGAGTGCCATGTCTAGGACAAAAAGggctcaacagtttttacccccaagccataagacacctgaacagGTTCATCAAACCATCCCCACCATGGACCTACTTAGGAGAACAGCCATGCAAGAGGACATGGTCCAGTACGATCTTTTCTTGGTTCAGCCAAACCTCTCAGACACACAGGCTGACGAACTATGTCTGCAACACCTAGTGGAGGAGATTTTGGCCAAGGTTGCACCTCTCCTCATGCGGCATATCTGGCAACAGCAGCCATTCAACCTCAAGTACCACACTGAGAAAGGGGGAGTTCCTGCACACATTGGAGGTAGCACTGTGTTTGGGGACAATGTGGAGGATGAGTGGTTCATCGTATACCTCCTCCTCCAAATCACACAATCCTTCCCTGAACTTGCTGCCAGGTTAGAGGACAATGATGGGGAGTTCCTTCTGATTGAAGCAGCAGACTATCTTCCAAAGTGGTTGAATCCAGAGAGCAGTGAAAACAGAGTGTTCCTCCACAGAGGTGAGCTGTACATCCTGCCTTGTCCCTCCCGCTCTGGTGATGTTGGCCTGCCCAGAGATGCAGTGCCCAGTGTGACCCAGGCTCTGGCACTGCTGTCATCCCACACACAGGCCTGTCTCGCAAGCCCCAAGATCCGCACTGCCCTGGGGAAAAGACTGGCGGGATATCCAGAGAAGATCCAGGCAAACCTTCACCATGCTCACTGCTTCCTGCCTGCGGGCATCGCTACAGTGTTGGCACAGCGACCAGACCTGGTTGCCCCGGCAGTGTCAGCTTTCTACCTGAGAGATCCAGTAGATCTACAGGCCTGTCGGACGTTCCGGACCTTTCCCGCCGACACACGAGTCCTAACCTCGGTGACATTCACCCGTTGCCTGTACGCCCAAATGCAGCAGCAGCATTTCACCCCCGACCGGAGGAGTGGGTTCACCCTGCCTGCCCGGTCCCACCCCCAGTACCGTGCCCACGAGCTGGGCATGAAACTGGCCCATGGCTTTGAAATCCTCTGCTCCAAATGCAGACAGCCATCATCGGTCCCTGATGCTCCCATCAGCTGTAACCCCTTGTGGAAAGGATTTCTGAACAGTCTGAAGAAGAAGGGTTATTTCAGAGGGGAGCTGGAGGGCTCTGCACATTACAGAAAACTGATGACCTCAGCAGAGAACTTCTTTAAGCAGTCAATAACCCCAACACACAGCTCAGGTGGCAAGGCCCCAGCTGAGGAGGTTCTTCAGCTATTACAGAGCTGTGCTCCCTACAACCTGGATGAGCTGAGTAAACTGGAGGCCCATCTACCCCCAGAGGATAGTGAAGGTTGGCTGGATATTTCAGCCCAGGAGCTGGAGCATCTGTTGGAGGGGAGTGGAGTGGGGTTGGGTGGCTCAGAGCCCAGCCTGACCAATCATACGCaggggggaaggagtgagaaaggggAGGAGGGCAGCTACAGCCTAGTGGCTGTAACCCAGGGCATGAAGAACTTCATCAACGCCATGTCTTCACACGAGGGGGCCGAACTACCCTGGTCCCATTCAAATGAGCTGTTCAGGTTTGATCCAGAATCCATGGCTGGTGCACTGGACAGACTACTGGGGGCTAAGGATGAGGAGTTGGACTCAGACGacctagatgatgatgatgatgatgatagagTGAAGGGTCCTACTGGACCGCTAGGAGTAGGACCAGAAGCTTTGGAAAATCTTAGGAAGTACATGGATGAGATGGACCATGAGCTTATGGGCACAAACATCGGACAGAGCTTCAACCAGCAGGACACCAGTAAAGCAGGCCCTGGCCAGGAGGATCTACTGGGTGAGGTTGAGGAGGAGATCCAGCCCCTGAACATAGACCTCAACCTGGTCTCTAACCTCCTGGAGTCTCTGAGCTCCCAGGCTGGGCTGGCTGGGCCTGCCTCTAACCTGCTGCACAGTCTTGGCATCCACCTGCCTCCCAATACTGACCGTTCATGAacacctgccccccccccaaaaaaacggaCCTTTCATTATGACCTAGTGATATATCTTACTGTCTGCACAGGACTTTAAACTCCTGGCTCAGAGTACACTGGGCAGAATCAATATTTATCATCAGGATAGGGTTTTGACAACTGGATCATGTTTGCATTCAGAATGGCAGGATCTAAAAGTTAACTGTAACCCTAAAACTTTGATTCTAACACACTTGTATCCCTGTTGGATATATTAATCTTATTCTGACTATCTTAAATGTTTTTTTACAGCACTTATAAAACATGAAATAATAAAGCCATTACTTTTTGGGGACAAAATGTGTGTAACTATTTTCTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2116832 lncRNA upstream 12010 27422204 ~ 27424989 (+) True G1849299
TU2116808 lncRNA upstream 39277 27397302 ~ 27397722 (+) True LOC110502514
TU2116652 lncRNA upstream 236999 27199787 ~ 27200000 (+) True G1849129
TU2116622 lncRNA upstream 254071 27180134 ~ 27182928 (+) True G1849101
TU2116030 lncRNA upstream 465165 26969151 ~ 26971834 (+) True G1848531
TU2116846 lncRNA downstream 423 27449059 ~ 27456847 (+) True G1849304
TU2116869 lncRNA downstream 28596 27477232 ~ 27477737 (+) True LOC110503096
TU2117126 lncRNA downstream 110203 27558839 ~ 27559542 (+) True G1849558
TU2117133 lncRNA downstream 115225 27563861 ~ 27564082 (+) True G1849565
TU2117161 lncRNA downstream 135852 27584488 ~ 27584826 (+) True G1849592
XM_021580583.2 mRNA upstream 22509 27400913 ~ 27414490 (+) True LOC110502516
XM_021580582.2 mRNA upstream 38661 27380259 ~ 27398338 (+) False LOC110502514
XM_036960762.1 mRNA upstream 38661 27381164 ~ 27398338 (+) False LOC110502514
XM_036960054.1 mRNA upstream 290494 26695559 ~ 27146505 (+) True LOC110502511
XM_021580578.2 mRNA upstream 833914 26565286 ~ 26603085 (+) True LOC110502510
LOC110503096 mRNA downstream 25015 27473651 ~ 27485960 (+) False LOC110503096
XM_036960072.1 mRNA downstream 40577 27489213 ~ 27505393 (+) False LOC110502521
XM_021580596.2 mRNA downstream 40578 27489214 ~ 27505393 (+) True LOC110502521
XR_002470338.2 mRNA downstream 59759 27508395 ~ 27516541 (+) False LOC110502522
XR_002470339.2 mRNA downstream 59759 27508395 ~ 27516541 (+) True LOC110502522
TU2116734 other upstream 160740 27274338 ~ 27276259 (+) True G1849208
TU2112363 other upstream 3082753 24326264 ~ 24354246 (+) True G1845108
TU2111249 other upstream 4090510 23345044 ~ 23346489 (+) True G1844044
TU2107504 other upstream 6651796 20781865 ~ 20785203 (+) True G1840558
TU2107245 other upstream 6920113 20492027 ~ 20516886 (+) True LOC110502429
TU2117481 other downstream 541638 27990274 ~ 27992963 (+) True LOC110502527
TU2117472 other downstream 553239 28001875 ~ 28006214 (+) True LOC110502528
TU2118352 other downstream 1049387 28498023 ~ 28525237 (+) True LOC110502541
TU2119099 other downstream 1594725 29043361 ~ 29075998 (+) True G1851386
TU2120344 other downstream 2569854 30018490 ~ 30025046 (+) True G1852590

Expression Profile