RNA id: XM_021580601.2


Basic Information

Item Value
RNA id XM_021580601.2
length 2110
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110502526
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27850104 ~ 27859306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTGAAGACTTTCCAGTGGCACTGGAACACCCCTAATCATTTTACCCACCTCATGTTCAGGTGAGAAGAAAGGTGGAtatatggaaagagagagagagagatgagtatgAAAGTGAGCTAGAGACGAAGGGTAAGCCAGGGAGGAAATTGCGTGAAGGGGAAATGGTGGGAGAGCAAGAGGGATTTGGGGTATCAGACTAAGAGAGGGAGTAATAGAGGGAAGAAGGGAAccgggagggagagagcaaaagACTGACGGGATTTCAAGACTGGAGAGTCAGCAGTGAGTATGTTTGtggaaagaggaggggggataagTATTGAGAAAAAGAGgtagggaagggagagaggtgaggctTGGTTTGATTCATGTTGTGATCAGAGCCAATAGAAAGCCCCCGTCTATGTCTAGGAGGAAGCAGAAGTGAGAGTCCAAACCCAGCAGGAGACATACAGAGACGCACAAACCTACAGACACAGAACTAGGATACACAGACATAGAAACCCATTGGCATGGAAAGAAAGATTACAGAGAAAGGTTAAGAGATAATGACATGTATTATTAGATAATATATATTTGAGATGGATATGAGATAGACATGGATTATTAATAAACTCAAAAATACAGACTCAGTGGAGAGAAACAGGACCACAGACCTTGGGACACGCAACTGACAATCCACCTCAGCAACCACTGCTGTTCCCATGGAAACCAATACCAGGATTCACTCTCCAGGACTGGTAAGGGTGGACAGCTACCCCTAACAGAGACAGGATCACCCCACTGTCCCGGGACACTGTGGCAAGAGAATGTTTTGGAGAATCACTCTTCCAGTCCTACTGGCTGGGGTACTCTGCGTAGCCACAGAAACAAGGAAGCCCCGTCCCCAAGGCTCCATCCCCTCACCTTTCAAGACCAAAGGCAACCTGTCAGATCGTCAGCGCCTGTTGCCGCGGAAACCCGAAGTCCTTTCGTCAAGTCGGGAGGCCCTGGTGGTCACCGAGCGCCGGTACCTCCGACGTGACTGGTGCAAGACGCAACCCCTCCGCCAGACGGTGAGCGAGGAGGGCTGCCGAAGTCGTACGGTGGTCAACCGCTTCTGCTACGGCCAGTGTAACTCCTTCTACATCCCCCACCTCATGGGCCCCAGCTCAAATCGAGGCCCAGGGTCCAGCCGGAAAAACCACAACAAGGTCCAGGAGCCCTTCCAGTCCTGTTCCTTCTGCAGGCCACACCGCTTTACCCAGCTCACTGTTCAGCTGGACTGTCCGGGCCTGCAACCTACCTTTCGCCATCGCAAGGTACAGCGTGTCAAACAGTGTCGCTGTATGTCGGTGGACGTGACTGGCAACGGGAAACTGTGAGGAGTTCTTTGGAACCATACCATGACAGTCACCATGGATACTAATGTGACAGTGAAAGTGAACATTAACATGAACATGAATAGCATAGATATGACAGGGGACATGCTAGTACTTCTCCCTTATATTGGGTTATTCTGCATAATCACTTTGATTGGTCACACAAAATGAACCTGACAGGTACTGATAGTACAGAGTGACCCAGCTATAAGACCTTTGACTATATGGGCAGCTATGGTGAAAACTACAATGTGCAGACATAAATGGATGGATGCATAGCACAACACCAACTGAAGCGCAGACATGTTTCAGTTCAACGCAGTCAATCATATGAAACAACTGGGTCCTTCAACTCTTTATAAGCTCATACAGGTTGTGATATTACCTTACCTAGGGCCATGGACTGATGGCCCCTTTCATCTGACTGTTGGCTCTAGAAGGAACATACATATAAAACCACAAACACAAACAAGTTCTAGACTGAAAGTGGAGCTCTTAAGCTGGCTGTGTCATGTTTTACTCGGTTTACCTGGGGGAACTCTCCAGCCAATAAGGCTACGGACTGAGAGAAAGCCCCCATAGCCTGTCTAAGTTTCTGCCTTTTTAATTCAAGAGCCGCCTGTGAAATAATTCTGACAAACATCAAGCTAACCAGTAAAgaaattatattattatattatgtataACTGTGGTACTATATAAGTATATGTCAAAAGATAAGacactataaatatatatacaatcTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2117844 lncRNA downstream 75702 27774132 ~ 27774402 (-) True G1850249
TU2117843 lncRNA downstream 77854 27771213 ~ 27772250 (-) True G1850248
TU2117841 lncRNA downstream 80651 27768955 ~ 27769453 (-) True G1850246
TU2117840 lncRNA downstream 81438 27767804 ~ 27768666 (-) True G1850245
TU2117210 lncRNA downstream 233127 27616567 ~ 27616977 (-) True G1849641
TU2117982 lncRNA upstream 130878 27990184 ~ 27992969 (-) False G1850380
TU2117983 lncRNA upstream 130878 27990184 ~ 27992969 (-) False G1850380
TU2117984 lncRNA upstream 130878 27990184 ~ 27992969 (-) True G1850380
TU2118082 lncRNA upstream 256294 28115600 ~ 28120442 (-) True LOC110502532
TU2118099 lncRNA upstream 277258 28136564 ~ 28137101 (-) True G1850489
XM_021580595.2 mRNA downstream 396224 27449622 ~ 27453880 (-) True si:ch211-248a14.8
XM_021580585.2 mRNA downstream 414262 27423892 ~ 27435842 (-) False LOC110502517
XM_036960074.1 mRNA upstream 786 27860092 ~ 27982179 (-) False LOC110502525
XM_021580599.2 mRNA upstream 786 27860092 ~ 27983425 (-) False LOC110502525
XM_021580600.2 mRNA upstream 786 27860092 ~ 27983425 (-) True LOC110502525
XR_002470344.2 mRNA upstream 256289 28115595 ~ 28115991 (-) False LOC110502532
XM_021580607.2 mRNA upstream 279862 28139168 ~ 28148897 (-) True fam13c
TU2114269 other downstream 2409717 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 4504333 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 4616681 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 4631834 23215485 ~ 23218270 (-) True LOC110502461
TU2109040 other downstream 6478305 21345514 ~ 21371799 (-) True G1841959
TU2118048 other upstream 215619 28074925 ~ 28078251 (-) True G1850441
TU2118971 other upstream 1065433 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 3292303 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 3292303 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 3358291 31217597 ~ 31218171 (-) True G1854905

Expression Profile