RNA id: XM_021580602.2



Basic Information


Item Value
RNA id XM_021580602.2
length 1076
RNA type mRNA
GC content 0.38
exon number 7
gene id LOC110502527
representative False

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 27990245 ~ 27993189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGCTTCCTCGAACAAAAAGCGGAAACAAAAGAAATCATACATATCTCAAAACTAATTTTTGTGAGCTGAGCCGAGAAACGGGTATACAACTGACAGTGTCCAGTCGTTACATCATACATCTAAAGCAGGGGGCTGACATGGCTTTGAAAAGAATACAGAAGgagTTGCATGACTTGCAAAGGGACCCTCCTGCTCAATGCTCAGCTGGACCAGTTGGAGAGGACTTGTTTCATTGGCAAGCCACCATCATGGGACCTACTGACAGCCCATATCAGGGAGGAGTATTCTTCCTCACCATCCACTTCCCCACAGACTATCCCTTCAAACCACCAAAGGTAGCCTTCACAACGAAAATCTATCACCCAAACATAAACAGTAATGGTAGCATTTGTCTGGACATTCTGAGGTCACAGTGGTCCCCAGCACTTACAGTTTCGAAAGTTTTATTGTCCATATGTTCTTTGCTATGTGACCCAAACCCAGATGACCCCCTAGTCCCAGACATAGCACACATCTACAAGCAGGACAAAGAAAAGTACAACAGATTAGCAAGAGATTGGACTCAAAAGTATGCAATGTAAAGGACTGACGTTTTAGACAACGGAAAAAGCTTAAGCAAATGTATTTCCTGGACACCTCTGAAAACAAAGTACTGTTGCCACCCCTCATCCACACTGGTTCAAGAAAGTGTTTTATATGGGAAGCACTTTCTATGCCCAAATTAACTGTTTTTATGCTTTGAACTCATTATTTTCTTTGACATTCCCAATGTTATATAAATTATTATTCAGTTATTGCTGAGATGGCCATaaagatttaaaaatatatatatgaatcCAGTCCCATCCCTCATCTTATAGGtaattttttctttattttagatATTTTTATTGTATAGTATCAAGCTATACTTAATCTATTTTTATTATTTTGCATTAAAAAGTAAAACAAATGGATCTTGTCTTTATTGTGATACTGGAGATGCGTTGTATTGTGATTTCCAGTTCTGGACCTTAATGTTTAGAGAAGTACAGTATTTCTTTCCCATTGTGCATCAACCCTTTAACTGAAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2117412 lncRNA upstream 83103 27895129 ~ 27907142 (+) True G1849835
TU2117398 lncRNA upstream 114063 27874444 ~ 27876182 (+) True G1849821
TU2117354 lncRNA upstream 141728 27839595 ~ 27848517 (+) True LOC110503097
TU2117227 lncRNA upstream 218037 27771919 ~ 27772208 (+) True G1849658
TU2117229 lncRNA upstream 219739 27770035 ~ 27770506 (+) True G1849660
TU2117598 lncRNA downstream 235372 28228561 ~ 28230666 (+) True G1850012
TU2118325 lncRNA downstream 468058 28461247 ~ 28461479 (+) True G1850667
TU2118327 lncRNA downstream 474105 28467294 ~ 28467615 (+) True G1850669
TU2118346 lncRNA downstream 501346 28494535 ~ 28494738 (+) True G1850688
TU2118348 lncRNA downstream 578418 28571607 ~ 28571947 (+) True G1850690
LOC110503097 mRNA upstream 149906 27790759 ~ 27840339 (+) False LOC110503097
XM_021580597.2 mRNA upstream 221185 27765818 ~ 27769060 (+) True LOC110502523
XR_002470338.2 mRNA upstream 473704 27508395 ~ 27516541 (+) False LOC110502522
XR_002470339.2 mRNA upstream 473704 27508395 ~ 27516541 (+) True LOC110502522
XM_036960072.1 mRNA upstream 484852 27489213 ~ 27505393 (+) False LOC110502521
XM_036960075.1 mRNA downstream 8102 28001291 ~ 28078254 (+) False LOC110502528
XM_036960077.1 mRNA downstream 8240 28001429 ~ 28078254 (+) False LOC110502528
XM_036960078.1 mRNA downstream 8240 28001429 ~ 28078254 (+) False LOC110502528
XR_002470343.2 mRNA downstream 8240 28001429 ~ 28078254 (+) False LOC110502528
XM_036960076.1 mRNA downstream 8241 28001430 ~ 28078254 (+) False LOC110502528
TU2116734 other upstream 713986 27274338 ~ 27276259 (+) True G1849208
TU2112363 other upstream 3635999 24326264 ~ 24354246 (+) True G1845108
TU2111249 other upstream 4643756 23345044 ~ 23346489 (+) True G1844044
TU2107504 other upstream 7205042 20781865 ~ 20785203 (+) True G1840558
TU2107245 other upstream 7473359 20492027 ~ 20516886 (+) True LOC110502429
TU2117472 other downstream 8686 28001875 ~ 28006214 (+) True LOC110502528
TU2118352 other downstream 504834 28498023 ~ 28525237 (+) True LOC110502541
TU2119099 other downstream 1050172 29043361 ~ 29075998 (+) True G1851386
TU2120344 other downstream 2025301 30018490 ~ 30025046 (+) True G1852590
TU2120765 other downstream 2553935 30547124 ~ 30653216 (+) True LOC110502560

Expression Profile