RNA id: XM_036960077.1


Basic Information

Item Value
RNA id XM_036960077.1
length 6809
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC110502528
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28001291 ~ 28078254 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATTTCAATCAATCCCTCAACCCTTAGAATTCAATGTGGAGTGGAGCTTTACAGTTAGGGTAGGATACTTGTTGACATCATGTGACCTGCGTACCTTCAAAATTATTCGGCAATCCTAATTTATTCGAAAACACCGTTTACATCATAATTTGGCGCAATGAAAAAAATTAGACAAAAGAAGATGAACACCTCCCGAACGAATAGAAATGTTGTCGATCTATAGAACATTCCTCCTATACCTATCTTCGTTAcacattttcaaatgttttttttttgcgacGTTTTTGTCGGataaacctgggtcaatggaaaATAAACCTGTTGATTGGGACAAATGAGAGAAATTAATAGTACATGCCAAAGAAACTACATTTGGGAGGAGTCCCACATATTGGAGTTGTGTCTGACACCTGAAACTTTACTTGTGTTCTAGACTCAGCAAACCAAACCGCCACTcaatggggaaaacagaggggcTCGAGGAAACGGTCGAGGAAGAAGTCAATGCGCAACAATGAGTCTGGACAAAATCTCAAAGTGATAGATAAATAAGGGAAAGTAGGTTTTACAATCCACAACGTGGtagtttacttttttttttagaaacGCAGTGGCCATTGGAAACGTTGCTGTGCAGCGCAATGGCTACCCAGTGCGACTCCCTGAGCGGATACTTGCAACAGTCGGACCAGGGCTCAAATAGCGAGCGTAGTACTGACTCCCCGGTCCCCGGGTCCGAGGATGACTTGAGCGGACCCCATGCCTTACCAGACCCGGAGTGGACGGAGGAGAGATTTCGAGTGGACCGCAAGAAACTGGAAATCATGTTATTAGCGGCCGCTGGGGGACGAGTCAATGGTGGCGAGGATTTCTTTCAGAAGGTCATGGATGAAACCAAAACACAGATAGCGTGGCCTTCCAAATTGAAGATCGGAGCCAAGTCCAAAAAAGATCCACACATTAAGGTTTGTGGAAAGAGAGACAATGTGAGGGAAGCCAAAGACCGAATCATGTCAGTCCTCGACACAAAGcagacTAACAGGGTAACCCTTAAGATGGACGTGTCCCACACAGAGCACTCCCACGTCATCGGCAAGGGAGGCAACAACATCAAGAAGGTGATGGAGGACACGGGTTGCCACATCCACTTCCCCGACTCCAACCGCAACAATCAGGCGGAGAAGAGCAACCAGGTGTCCATTGCAGGTCAGCCAGGAGGGGTAGAGGCAGCTCGAGCCAAAATTAGGGAGCTGCTCCCTCTAGTTTTGTCGTTTGAGTTGCCGGCCATCGTGCAGCCTGACCCAGGCTCCCCCACAGTGCAGCACATCTCCCAGACCTACAACCTCACCGTATCCTTCAAGCCCCCCACACGTCTCTACGGGACCACCGGAGTGGTCCGCGGCTCCCAGAACAACTCTAGTGCCGTCAAGAGGGGCACTGCCATGCTGCTGGAGCACTTGGCGGGAAGCCTTGCCAGTGCCATCTCAGTCAGTACCCACCTGGACATCGCCCCTCAGCACCACCTCTTCATGATGGGCCGTAACGGCAGCAACATCAAACACATCACCCAGAGAACAGGAGCCCAGATCCACTTCCCCGACCCTAACAGCCCCCAGAAGAAATCTACGGTCTACATCCAGGGCACCATCGAGTCTGTCTGCCTGGCGCGCCAGTACCTCATGGGCTGCCTGCCCCTGGTGCTGATGTTTGACATAAAAGAGGACATCGAGGTGGAGCCCCAGTGTATCACAGCTCTGATGGAGCAGCTGGATGTCTTCATCAGCATCAAGCCCAAACCAAAGCAGCCAAGCAAGTCTGTGATAGTAAAGAGTGTGGAGCGGAATGCAGTGAACATGTACGAGGCCCGGAAGTTTCTGTTGGGTCTGGAGAGCAACGGGGTGTCATCAGCCATGTCCCCCTCCACCAACGGCCCCACCCTCATCTGTCCTGTCGGCCTGGACATCTTGGCCTCTGCTGGCCTGGGGCTGAGCAGCCTGGGCTTCCTAGGTGCATCAGTGCCCCATTCTCTCAGTAGCTCCCCGGCTCCAAACTCTGTTCTCAACAGTCTGAACTCTTCCATGAGCCCTATGCAGAACCCCAGCCCCAGcaccccatctccctcctcctcactgtGGCCCAGCTCTCTCACCAGCACCCAAGGCTTCTCGTCTCAGTTGATGATGCACCCTGTAGCCCAGGCCACTCTGAGCAGTATCCTGCTCTCTGGGGTCCAGGGGTACACCCAgaacaccccctcccctccccccggGCTTTCCCCAATCGACAAGCAGACCAACGGGGTCCCTGACTGCTCCAAAGGCCCCTGTACCATCAATGGACATGTCAAGCATCCTGGCTCAGTCTATGGCAGGATGTCCAGTGTGTCACTGGCAGACACGGTTCTGAACCCCAACCAGTGTGACTCGGTCCAGGAGGCCAGCGGACACAACCCGTCAGAACCCCGCTCCAGCAAGTCCAACCAAGACcaagGCTCTGACACCTTTGTGGAAGTGGGCATGCCCAGAAGCCCATCTCACTCAGCAAATGGAAACGAGCTGAAACAGATGCTGGCTTCCTGTAAGACGTCAGGGAAACGGCAGGCGGTGGAGCTCCTCCAGGGGACCAAGAACTCCCATCTCCAGTATGTCTGTCCAGAGCTACACTCAGACTGCTTACTGTCAGACCCAGAGTCGAGTGCTTCAGACAGCCCAGTAACAGATAAGAGGGCACCGGGCAGTGAGCGGGCAGCAGAGAGGGCAGCACAGCAGAACGAGAGGGACAGGATCCGCTTGGCTCCACATTCTTCCTTTGCCAATATGCAGGGCCAACTAGAGGCGCTTGAATATGAACAGAAAAAGCTGTTAGCAACCAAGGcAATGTTGAAGAAGCCTGTTGTGACTGAGGTGCGGACCCCCACTAACACGTGGAGTGGCCTGGGTTTCTCCAAGTCTATGCCAGCAGAGACCATCAAGGAGCTGCGCAGGGCCAACCACGTGCCCTACAAACCCACCATGAGTACCACCTACGAGGGCTCCCCCCTGTCTCTTTCCCGCTCCGGCAGCAGAGAGGGGGTGGGCAACGGCAGTGACTCTGATAACTGGAGAGACAGGAATGGGGGTGGGAACGGTCTTCCCAGCCACGCCGAATTCCCAGTGTCTGTTTGCAGTCCTAAGAGGAAGCAGAACAAATCGGCTGCAGAGCACTATCTGAGCAGCAGTAACTACATGGACTGTATCTCCTCGATCACCGGGAGCAACGGGTGCAGTCTCCAGTCCTCTCTGAAAGGGTCGGACCTCCCGGAGCTGTTCAGCAAGCTGGGCCTGGGGAAATACACAGACGTGTTCCAACAGCAGGAGATCGATCTCCAGACCTTCCTCACTCTTACAGACCAGGACTTGAAAGAGCTGGGCATCACCACATTTGGAGCACGCAGGAAAATGCTGCTTGCCATCTCTGGTGTGAATGACTACGAACTGAACAAGAACCGAAGGAAGCTGTTTGAGGCTCCTATCAGATCCTCCTTCCTGGAAGGGGGAGCCAGCGGTCGTCTGTCTCGTCAGTTCCACGCTGACATGGCTAGTGTCAGTGGTCGGTGGTAGAGCTCCACTCCGCCAGGACTTAACACGACAGAGAACCAGCCTTCAGTGCCTCTCTTTGGGCTTCTGTAGGCCAGTCTCCAGCCTAGCTGGTTCTCAGTTGTCCACCCTCCAGCAGAACAATAACTATtcaactcttttttttcttttttcttttttaaggCCATAACAAGAAGCCATAGTTTAACCAGAAGTGCCAAAAAAAGAGAAGAGCCATCTGTGGTATAGAAAGTCCAGTGTTCACTCCACATAGTGGTTAGATGTTTCTGTGGAGTATCTATGCATGAAGGGTATTTGACTAGTTATGAAGGACAGGTACTGCCCAGTAGTTGTCCATTTTTGTTAAAGGGAACAGGCCAAATGATTAGTACAAAATAATTACATTGATACTGCATTCGTAGTATGCTGTTTTATCAATGACATGCACTTTAACAATTTTGCCTGTGAAAGCCTGATTCCTCATATTGGAATACCTATGCATTTTGTATTAACTCAAAGCACAGATGTATTTGTACCAAGCCAAATGTAAGCACTTAGTGAGATGGGGAAATGAAGTCAATaaagtgacatcaacaactaaACGCAGAACCTAGTGGATTGACCTTGGACCCCTCAGTGTTTTGATTGATTGACATTCCACGAAGGTCAGTGTTGTATCCACCAGCAGCTGCTGTAGTTGGGCTGCAGTCTGTATGTCATATGTATTTAGAAAAGTATTATTTTGTattcacattattattttttatctttCTGAGGTAATAATCAGtttcatgtatttttttatgttttcatTACTTTATACATTCACAAATGAGTTCCTGTGGTTTCTAATTAGTTCATTATTAGTCTCTTTGATAATTACCTTTACCCCATAATCTTTGGTGCCGTCAGGCTGTGTCATGAGACTgcagcagagaaagagagcagtctGTCAAAACAGCAGGCCCCTCTCTCTGATTCTGTTTGTTGGCCTCCTGTGGTTTTCTTAGTCATTGTCATTATGTCTCCTGTAGTCATGTCAATGGTCTTTGTCAGTTAGTCTTTCTGTGGTCTATATTCTGTGTTGAATCCTACTATGTGTTCCTCTATCTATTCAGGAGACATGTCATTATTCACAGACTGTGTGCTTTTATCTTTCCTTACACTTTATACGCTTTTAGAGCTGCGGACAGAGAAGCAACCTACTACAGTGTCGAATGCCTCCACACTACTACAGTGTCGAATGCCTCCACACTACTACAGTGTCGAATGCCTCCACACTACTACAGTGTCGAATGCCTCCACACTACTACAGTGTCGAATGCCTCCACACTACTACAGTGTCGAATGCCTCCACACTACTACAGTGTCGAATGCCTCCACACTACTACAGTGTCGAATGCCTCCACACTACTACAGTGTCGAATGCCTCCACACTACTACAGTGTCGAATGCCTCCTTTACTTCTCTCTCTAAGCTGCTCAGCAGGGAATTGTTTCTATTAGAATATAGCTATTTGGACTGCCACTACCTCTCACCCAGGAGGGAACTCACACCAAAGGTGTAAACTCAACTCTATTTCATATGACAGCCCCTAGCCTAGACACATTTCTACATTTACCAAGATTGTGTCCTCAACATGTGTTCTAGCTTAAATTAAGAATAGTGGAAATATACAATTTTCAGGATCAGTTGTGCAATCAGATATCTGGGATTCTTGTAAAGCTATATTTGATGAAGTAACAGGATTAGGTGTGCAGTCAGATATCTGGGATTCTTGTAAAGCTATATTTGATGAAGTAACAGGATTAGGTGTGCAGTCAGATATCTGGGATTCTTGTAAAGCTATATTTGATGAAGTAACAGGATTAGGTGTGCAGTGGTGCTGCTTATCATCAAAGGACGAAGTCACTCTGATCTCTGTATTATGTTCATGTAAAACAGTATTCTCATACCCTTTTGTTAACGCTGTCTGACTCTGGAAGGTTTTTGCTGTAACTGTTTTAGATTGAACCCCCATATTAAGCCTGGAAGTTAATAGTCTTTGTGCATTCTATCATATAAGACTGTTTGTTTAAAGTACTCTTTATTTGCAGAATGTTTGTTGGTAGATGGTACGGTATTTGACGGACAATGCAGTGAACTCTATGTAGAGCCCAAAGTGAAAAACTAAATCTTGAAGCTAAATGACAGTAGGTACAGAATGCTGAAGCAGATGTAGAGAGAACATTTCAAAGCAACTTACATGCCAAAGCTTTGTTTCCACACAACAGCAACATCACTGACAGCAGACGTCTTAGCATCAACCATTCTGTAATCACGCACAGAGAGAAGTCACTTGTTTCTCATGTTGCATGCTTTTTCTCATGAAGATCTGTTGTATCCTGTGTTTACGCCATACCACTTCTTCTAACTGATTTGTGCCCATGTCACTATCGTATCAATAAGATATCCTGACTTGGTTGTCATTTCTGACCAGTAGTGTGTCATTTTCTTTGAAATCTTGAAAAGACAGGATATTAAAAGGGATTTGTTCCACCAAAAATATGGGTTGTGTTCAACCCTTTATCATGGTACTATATTGAAGCTGTTCAGCATTGATTATTACAGTGCAGTTATGTTGAGCCATGGTAGCTACCCTGCAAACCagacaatgttttttttattttgcttCTGTAAAGTTATGCCTGCGGTCATTTGTGTGCTTGGAGGGTAATAGGGTCTGTCAAGTGAATGTTAGTGAGAATTATTGCTTTTTTATCTGGTTTAATGAGTCATTTGCAATCAAAGTTTACCACCAGCCTCCTGTCCCTACACTTATTATGTCTTAAATGTTTGTGTTTAGTTCCTGTTATTCCCAAAGGGATACATTTGAAGGGTCTACTTTATACTGAGTTGGATGAAATGGTACAACATTTATAATGAATGTAAACCACTAAGGAATTTATGTATGTTTTGCATCTCTTTTGTATCCTGTGCAGCCATGCTTGTTAGCAATTTATCTCCAGTTTTGTGTGAGAGAAAGGTACTGTTCCAAAAAAGGTTCTACAGAAGAATTTAGGAACTTTGCCTAAAGCTCTTGTTGATACGATTGTTGAGAAGGACATTGTTTTAGCTATGTTGTTATATCTGTAAATATAGTACAGATGTGTTTTGGAGGAGTTATCAAATAAGCCAAAAAGTTTGTTCAAACATTGAAGTGTTATTACAAAGGTAATAAATGTATGCAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2117412 lncRNA upstream 94287 27895129 ~ 27907142 (+) True G1849835
TU2117398 lncRNA upstream 125247 27874444 ~ 27876182 (+) True G1849821
TU2117354 lncRNA upstream 152912 27839595 ~ 27848517 (+) True LOC110503097
TU2117227 lncRNA upstream 229221 27771919 ~ 27772208 (+) True G1849658
TU2117229 lncRNA upstream 230923 27770035 ~ 27770506 (+) True G1849660
TU2117598 lncRNA downstream 150307 28228561 ~ 28230666 (+) True G1850012
TU2118325 lncRNA downstream 382993 28461247 ~ 28461479 (+) True G1850667
TU2118327 lncRNA downstream 389040 28467294 ~ 28467615 (+) True G1850669
TU2118346 lncRNA downstream 416281 28494535 ~ 28494738 (+) True G1850688
TU2118348 lncRNA downstream 493353 28571607 ~ 28571947 (+) True G1850690
XM_021580602.2 mRNA upstream 8240 27990245 ~ 27993189 (+) False LOC110502527
XM_036960350.1 mRNA upstream 8240 27990245 ~ 27993189 (+) False LOC110502527
LOC110503097 mRNA upstream 161090 27790759 ~ 27840339 (+) False LOC110503097
XM_021580597.2 mRNA upstream 232369 27765818 ~ 27769060 (+) True LOC110502523
XR_002470339.2 mRNA upstream 484888 27508395 ~ 27516541 (+) True LOC110502522
XM_021580608.2 mRNA downstream 20193 28098447 ~ 28140673 (+) False LOC110502531
XM_036960081.1 mRNA downstream 41096 28119350 ~ 28140673 (+) True LOC110502531
XM_021580658.2 mRNA downstream 384201 28462455 ~ 28466290 (+) False LOC110502539
XM_021580659.2 mRNA downstream 384252 28462506 ~ 28466290 (+) True LOC110502539
XM_021580660.2 mRNA downstream 419322 28497576 ~ 28571528 (+) False LOC110502541
TU2117481 other upstream 8466 27990274 ~ 27992963 (+) True LOC110502527
TU2116734 other upstream 725170 27274338 ~ 27276259 (+) True G1849208
TU2112363 other upstream 3647183 24326264 ~ 24354246 (+) True G1845108
TU2111249 other upstream 4654940 23345044 ~ 23346489 (+) True G1844044
TU2107504 other upstream 7216226 20781865 ~ 20785203 (+) True G1840558
TU2118352 other downstream 419769 28498023 ~ 28525237 (+) True LOC110502541
TU2119099 other downstream 965107 29043361 ~ 29075998 (+) True G1851386
TU2120344 other downstream 1940236 30018490 ~ 30025046 (+) True G1852590
TU2120765 other downstream 2468870 30547124 ~ 30653216 (+) True LOC110502560
TU2120879 other downstream 2727296 30805550 ~ 30806454 (+) True G1853092

Expression Profile