RNA id: XR_002470344.2



Basic Information


Item Value
RNA id XR_002470344.2
length 321
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110502532
representative False

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28115595 ~ 28120442 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGCAGGATGCCTCCTGCTGTGGGTCATCAGGCTCATGAAGGGAGTGTGAGAGATCACATGGTGTTCTTCATGGATAGTAATAAAGGCATGATGGGGTAAGCAGAACCAAGGGATGGGTACACCTGCCTGTTCTCTCTTTTTTTGCTATCGGAAGAAGACCACTACTCACCGCCGATGCTCCACCTTCATTCTATGGTTGCGattgttttttaaaaacttttctaTTGtctgtttgttcagtgttcacttAATAAGAAAAGTTTTCTCAATTTAATATTTTAATGGCACACCTAATAAAACATAGTCGAGCATTGAACATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2117982 lncRNA downstream 122626 27990184 ~ 27992969 (-) False G1850380
TU2117983 lncRNA downstream 122626 27990184 ~ 27992969 (-) False G1850380
TU2117984 lncRNA downstream 122626 27990184 ~ 27992969 (-) True G1850380
TU2117844 lncRNA downstream 341193 27774132 ~ 27774402 (-) True G1850249
TU2117843 lncRNA downstream 343345 27771213 ~ 27772250 (-) True G1850248
TU2118099 lncRNA upstream 20573 28136564 ~ 28137101 (-) True G1850489
TU2118104 lncRNA upstream 33624 28149615 ~ 28149901 (-) True G1850494
TU2118379 lncRNA upstream 348597 28464588 ~ 28466261 (-) True G1850718
TU2118438 lncRNA upstream 471479 28587470 ~ 28587763 (-) True G1850764
TU2118440 lncRNA upstream 473447 28589438 ~ 28589658 (-) True G1850766
XM_021580599.2 mRNA downstream 132170 27860092 ~ 27983425 (-) False LOC110502525
XM_021580600.2 mRNA downstream 132170 27860092 ~ 27983425 (-) True LOC110502525
XM_036960074.1 mRNA downstream 133416 27860092 ~ 27982179 (-) False LOC110502525
XM_021580601.2 mRNA downstream 256289 27850104 ~ 27859306 (-) True LOC110502526
XM_021580595.2 mRNA downstream 661715 27449622 ~ 27453880 (-) True si:ch211-248a14.8
XM_021580607.2 mRNA upstream 23177 28139168 ~ 28148897 (-) True fam13c
XM_021580614.2 mRNA upstream 65095 28181086 ~ 28196057 (-) False LOC110502533
XM_021580612.2 mRNA upstream 65095 28181086 ~ 28196157 (-) False LOC110502533
XM_021580613.2 mRNA upstream 65095 28181086 ~ 28196213 (-) False LOC110502533
XM_021580611.2 mRNA upstream 65095 28181086 ~ 28196982 (-) False LOC110502533
TU2118048 other downstream 37344 28074925 ~ 28078251 (-) True G1850441
TU2114269 other downstream 2675208 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 4769824 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 4882172 23182987 ~ 23233423 (-) True G1843946
TU2111172 other downstream 4897325 23215485 ~ 23218270 (-) True LOC110502461
TU2118971 other upstream 808748 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 3035618 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 3035618 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 3101606 31217597 ~ 31218171 (-) True G1854905
TU2123334 other upstream 3864006 31979997 ~ 31981333 (-) True G1855326

Expression Profile