RNA id: TCONS_00051891



Basic Information


Item Value
RNA id TCONS_00051891
length 1101
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_026635
representative False

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 38912557 ~ 38918717 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


gtgtTTTATGGTTGATAAAGACCAGGCTGAAATCAATGCCATCCGTAAGGTGTTCAACGAGTCAGACATTCTCCTTTGTTGGTACCATGTAACGCAAGCAGTAACTCGTTGGCTGTCAATATCTGAATCTGGTGTGAGTGGACCTGAAAAGGCAGATGCAAGAGCGCACATCATACAGTTTATGTCAGAGATGAAATGCTGTTCAAAGGCACAAGAATTTAAGGAAAAGGCTGAGATGTTTCACTGCCAGTTTAGGAACTTCAAATATGTCTGCAAGTACTTTAGGAACAACTTGGAGACAATTGGTCATCTGTGGTCTAACTTTGGAAGATGCTATAAAAAGAGACTCTGACACAAACAgggagactggtctgaaatacaTGATACCCCCAtgaaaaacggaagtgttggcaggtgtgcttaccagtttaatatttgatctgctatagttagaaatcagactgttatatcttTTAAgcgtaacgcctgtttcacaccgcaagcgtcagcggtgcgtgtttttttttggcgtccatgttaacagattagagctttcataccgtacgcagcagcgcgtcagagcgaggtgtgagcgtcgctgaagcagcagtgcagcgatagtttcggcgctgggtctatttttgacgcgctgctcacgctcaattaaagtgacagtgcattgataatgacctaaatacattgaatgacagtaaaaagtaacaATTTTACTCAATAAATGCGTCAATAATATCAACcgatttatatatagtcaatcaaatgaacttaaaccattaaaaactgcaacaaacctTTATTtcggcccgaactacaaaaccaatagttaaacaattttagtatcagttttctTGGCGAGGGTAAGTGATTTACGGGAATTGTAGTCCATAgcaaagtgtattgtgggtagtgtagttcgacatgcatgctggatgatgtgaactCACTGTGTGCTGTGCTGCTCAAGCAGAGGAAGAAAGCTTTATTCGGCTTTGCTTTATGTTCGCTTAAGTTATTTCAcctgggagctgtttgcactgtgaaactgacaacacaacaaataagtaaaagaagggcATGCATTGA

Function


GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-612 No description available

Ensembl:

ensembl_id ENSDART00000141886

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00051885 lncRNA downstream 383141 38525979 ~ 38529416 (-) True XLOC_026631
TCONS_00051884 lncRNA downstream 1126717 37777841 ~ 37785840 (-) True XLOC_026630
TCONS_00051882 lncRNA downstream 1138829 37771677 ~ 37773728 (-) True XLOC_026629
TCONS_00053076 lncRNA downstream 1152623 37757463 ~ 37759934 (-) False XLOC_026628
TCONS_00051874 lncRNA downstream 1212575 37678156 ~ 37699982 (-) True XLOC_026627
TCONS_00053077 lncRNA upstream 55437 38971435 ~ 38973341 (-) False XLOC_026636
TCONS_00052479 lncRNA upstream 55437 38971435 ~ 38975355 (-) False XLOC_026636
TCONS_00053078 lncRNA upstream 55437 38971435 ~ 38975614 (-) False XLOC_026636
TCONS_00053079 lncRNA upstream 58262 38974260 ~ 38975698 (-) True XLOC_026636
TCONS_00052480 lncRNA upstream 196316 39112314 ~ 39113547 (-) True XLOC_026637
TCONS_00051889 mRNA downstream 128606 38762891 ~ 38783951 (-) False XLOC_026634
TCONS_00051890 mRNA downstream 135004 38765532 ~ 38777553 (-) True XLOC_026634
TCONS_00051888 mRNA downstream 166959 38705425 ~ 38745598 (-) True XLOC_026633
TCONS_00051886 mRNA downstream 219637 38647987 ~ 38692920 (-) False XLOC_026632
TCONS_00051887 mRNA downstream 229230 38650903 ~ 38683327 (-) True XLOC_026632
TCONS_00051894 mRNA upstream 196900 39112898 ~ 39152478 (-) False XLOC_026638
TCONS_00051895 mRNA upstream 219619 39135617 ~ 39171968 (-) True XLOC_026638
TCONS_00051896 mRNA upstream 259862 39175860 ~ 39180048 (-) True XLOC_026639
TCONS_00051897 mRNA upstream 265389 39181387 ~ 39190317 (-) True XLOC_026640
TCONS_00051898 mRNA upstream 275817 39191815 ~ 39198113 (-) True XLOC_026641
TCONS_00051881 other downstream 1138757 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051873 other downstream 1212606 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051859 other downstream 1836744 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051856 other downstream 1944564 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051846 other downstream 2156408 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051900 other upstream 322098 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051909 other upstream 733447 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051914 other upstream 1041360 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051921 other upstream 1172687 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051924 other upstream 1238296 40154294 ~ 40158687 (-) True XLOC_026658

Expression Profile


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