RNA id: XM_021580610.2


Basic Information

Item Value
RNA id XM_021580610.2
length 3286
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110502533
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28181086 ~ 28197583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAATATTGCTCAGACTTCACACTCAAGCATCACCGGCAAAATAACCTCCTTCTGCGCTAACTCCGGAGGATCCCTTTTACTTGTCGTTTAGAGTAGGTCTATTATGTGTATATTAAAGTGCATATATAACACTTGTATTCACTGTCAAGAGAAAGGAAACAGCTATTTTTCATTGCGATAACAAATAATTACTCCGTTTAGTTTTTACAAATTCAAAGGTGCTTTTACACTATTTGTGAAGAAACATTCAATCTGATTTGACTTGAAATACTTTGAAGCGCTTTCTGATCATCACAGGAACCCTCCCTGTTGAAGTTGTAAGATCCAAGCAGACAGCATGAGTCCTCATACCTCAAAGAAAGCGCTGGATGGAGGTTGGGGATGGGTGGTCATTGTGGCCTGCTTCATGGCCCAGTTCCTGGCCTACGGCTCCCCCCAGTCGGTGGGCGTCCTGTACCCAGAGTGGCTCCACACCTTCCAGGAGGGGAAAGGCATGACGGCATGGGTCGGCTCCTTGGTCTCTGGAGTGGGACTCATAGCCAGTCCTGTCTGCAGTGCCTGTGTGGATAACTTTGGGGCACGCCCTGTGACCATCTTCAGTGGGGTTATGGTGGCAGGGGGCCTGATGCTCAGCGCCTTCGCACCAAATGTCCAGTTCCTCATATTCTCTTACGGGATTGTCGTCGGTCTTGGCTGCGGTCTTGTCTATGCTGCCACATTGACCATCACCTGTCAGTACTTTGACAAGAGACGTGGCCTCGCCCTCGGCATAGTCACCACAGGCACAAGTGTGGGAGGGTTCCTCTATGCCACAGCTCAGAATGAGCTGATTGTTCTCTTTGGCCTGGAAGGCTGTCTGCTGATCATCGGGGCCTTGGCCCTCAACCTCATGGCCTGTGCCGGCTTCATGAGGCCCCTGAACATGCCTGGCTACTACCTCAAACAGAAGGCTGCTCTGGAGCGCACAAAGGAGCAGCCTTTCAAGAAACCGCCTGCTGACGACCTCAAGACCACACCGGGCACTGGCGAGAAAAAGCTACCGGTCAAGGATCACCTGATCACCATCGACGCCAAAGACATCCCCACACCTGACAACAAAAGGGGGTTCATGGCAGGTTTAGCCATTGTGAAAATTATCAAGAAGAAGCGTCAGGCTTACTCAAAGTACATGCACTCCACGGCTGACTTCCTGCATGACAGAAACTTCATGGCCCTCTGCATAGCTATATTCCTGTTCAGCCTAGGAGCCTTCCCCCCGGTCCTCTTCATGGAGGATGTGGCCCAGAGTGAGGGCCTCATCGATGAGGTCAAAATCATCCCCCTGGTCTCTATTGTAGCCATCACTACCGGTGTGGGCAAGCTGACCCTGGGCATGCTAGCAGACATTAGGTGGATCAACAGTGTGTTCCTGTACGCCTTCACCCTGCTGGGGACCGGGACGGCCCTTCTCCTCATCCCCATCTCCAAGAGCTACGTAGGCCTGCAGGTCCTCTCAGCTGTGGTGGGCTTCTTCTCTGGGAACTGGTCCCTAACGTCATATATCACTACCAAGATTGTGGGCCTGGACAAACTGACCCAAGCCCATGGGATCCTCATGTTCTTCGGTGGATTCGGGATCATGCTTGGGCCCCCTGTTGTTGGGTGGTTCTTTGACTGGACCCAGTCCTATGACCTGGCCTTCTACTTCAGTGGAGGCTCTGTGCTCCTGGGTGGAGTCACGCTCTTCCTGTGTGCTCTGCCCTGCTGGGACAAAAAGAAGGCTGACATCGACAGGCCCGACATTCAGTACACCACCAACTGTGACAAAGTTGCCTCTGTAGCCTGAACACTAACTTTCACATCGGCCTTGCTCTCCAGTGCTCCCAGCGATTTTTGCTGATAAGCTCTGTACCCTTCAAGAGGTTTCTTTTTCCCTGGTGCCAGATTTCACAGATGTGTACCTGAGAAGAGCTTTGAAGTAGGCCTTTTCTATACATCTTTATTGCGTTTTTACAACTTCTTACATTAAACTACAAAATTTTGAAAGATGCCTATGTTGAACATTTTAATAACGGCCTCATTTTAAGAGGCCTAATTCAACAAAATTGTTTCTCAACAAATTAATGCAATAGATTACGTTTACTTAGAATAAATgctgtttttttacatttctggATCTTTACTTGGGTCAAATGGAAAAGGCATTTTCCTCTGGTGACCCAGTGGAGAAATACAAACCAACAATGGCCTGTGAAGATGTTGGTTGAAAACACAAAAGGCTGTTCAAATATCTCAGCATATTGAAATGTATAACCATGCAAAATTTAAATTCGAAAGAATTTCCCAGGTATTTACTGGAAAAAAATCCAGGGATTGGAAAAAAACGAGGGAATGCACTTTAATGTACTCTTTTCAATTGTAGCCGCACAAACTTTTTGTTTCTATCTTACCAAAGCACCAGGATGGTGGATGCCTGTCAACACGTTATGCCTGATGAATAAAAGTCTTGCTTTTTAAGTTCATTGGCATTGTACTGTATTTTACTTGTACTGTCCaaactgtttttttgttttttttagttAAGGAGGtactaaacacctcactctgtCTTGACCGGACTAAGAACTTGCTGAATAATATGCTGTGCAAATACCAGAGACTGTACAGGAATAAGGTCCAGTTCCTTAAACTAGTTTGTTGGTTCTTTGTGGCATGACCCCTTTCCTGCATTTGTTCACCAGGCTGGTCCTATTCATAATGGtttaatgtgttttttttgcgTCTGTGCATGTTTttgtacttttattttttttttgtactaCATTTTGTACGTTCAACTCTTTCAATGTTTATAAGCAACTTTGTATACAGTATGCACTGAACCAGTCCCAGATATGCATTGTATGTAAAGATGGCATTCATTATTGCCATTATGATTTTATGTTAAGAAATATAATAATTGTGATACCTGCTTTGTTAGTCACTTGAAGatcccataaaaaaaaaaaagttaaataaaccaCAACATATTTCAGTTTATATTCTTCCTCAAATATAAGACTACTGGGATATTGTTTTATTCTTAGTCAAGCTTCTTTGTAAAAGTATTTACAGGGTTGAAATCTGTGATCTGTGATCCAAAAAGGTTAGAAACAGTAGACCTGTCACTTTTTATATGATGTTGAACCACTCTGTCTTATTCTTTTTTGTGTCTGGGTTACAGTATTTATGTTTGCAATATTTCGCTCTTTCTATTTTGTTATTTTCAACAAAAAAGTTCCAATAAATGCAATTCAATATTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2118104 lncRNA downstream 31185 28149615 ~ 28149901 (-) True G1850494
TU2118099 lncRNA downstream 43985 28136564 ~ 28137101 (-) True G1850489
TU2118082 lncRNA downstream 60644 28115600 ~ 28120442 (-) True LOC110502532
TU2117983 lncRNA downstream 188117 27990184 ~ 27992969 (-) False G1850380
TU2118379 lncRNA upstream 267027 28464588 ~ 28466261 (-) True G1850718
TU2118438 lncRNA upstream 389909 28587470 ~ 28587763 (-) True G1850764
TU2118440 lncRNA upstream 391877 28589438 ~ 28589658 (-) True G1850766
TU2118452 lncRNA upstream 395737 28593298 ~ 28593712 (-) True G1850778
TU2118636 lncRNA upstream 454183 28651744 ~ 28652420 (-) True G1850944
XM_021580607.2 mRNA downstream 32189 28139168 ~ 28148897 (-) True fam13c
XR_002470344.2 mRNA downstream 65095 28115595 ~ 28115991 (-) False LOC110502532
XM_021580599.2 mRNA downstream 197661 27860092 ~ 27983425 (-) False LOC110502525
XM_021580600.2 mRNA downstream 197661 27860092 ~ 27983425 (-) True LOC110502525
XM_036960074.1 mRNA downstream 198907 27860092 ~ 27982179 (-) False LOC110502525
XM_021580616.2 mRNA upstream 6383 28203944 ~ 28227097 (-) False LOC110502534
XM_036960082.1 mRNA upstream 11567 28209128 ~ 28227097 (-) True LOC110502534
XM_036960109.1 mRNA upstream 30977 28228538 ~ 28282898 (-) False LOC110502535
XM_036960110.1 mRNA upstream 30977 28228538 ~ 28282898 (-) False LOC110502535
XM_036960112.1 mRNA upstream 30977 28228538 ~ 28282898 (-) False LOC110502535
TU2118048 other downstream 102835 28074925 ~ 28078251 (-) True G1850441
TU2114269 other downstream 2740699 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 4835315 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 4947663 23182987 ~ 23233423 (-) True G1843946
TU2118971 other upstream 727178 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 2954048 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 2954048 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 3020036 31217597 ~ 31218171 (-) True G1854905
TU2123334 other upstream 3782436 31979997 ~ 31981333 (-) True G1855326

Expression Profile