RNA id: XM_036960082.1


Basic Information

Item Value
RNA id XM_036960082.1
length 2029
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110502534
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 28203944 ~ 28227097 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccacaaagtcaaacatGGAAACAGCAtcttgctttttggtcttaatttgaGGTTAGGTTAAGGCATAAggctagcagtgtggttagggttaagtttacgTTTAAAATACGACTTTAAGAATatacattgtagaaataggcgggcTTTAGCCATAATGATGACTTTGTGACTGTGGCAATTAGTGAAGACCCTGCTGCTGCCCCACAAACACTGCAGCTGCAGTCTCGTCTCCTCCACCGTACTGTCTGTCGCACACATAGCCATGGCGGACAGTGCAAGCGAGAGCGACACGGACGGAGCAGGGAGTAGCTCGGCTACACCGATGTCATCATCCGCCTCAAATTTGACCAAGCCGGGGGTAGTCATTTCACAGTTTCGATTAGAGGAGTTAACTAACCGATTAGCCTCACTACAACAGGAGAACAAAGTTCTTAAAATTGAGCTGGAGACGTTCAAACTCAAGTGTAAGGCACTACAGGGGGAGAATCGGGACCTGCGTAAAGCTAGCGTCACCATTCAAGCCAGGGCTGAGCAAGAGGAGGAATTCATCAGCAACACTCTGTTCAAGAAGATCCAGGCCCTGCAGAAAGAGAAGGAGACCCTCGCCGTTAACtatgagaaagaggaggaatttCTCACGAATGAACTGTCAAGAAAACTCATGCAATTACAACATGAGAAGGCTGAGTTGGAACAGCACTTGGAACAGGAGCAGGAGTTCCAGGTCAACAAACTGATGAAGAAGATCAAGAAAATGGAGAACGACACAATATCAAAGCAGCTCACCTTGGAGCAGCTAAGGCGCGAGAAGATTGACCTCGAAAACACATTAGAGCAAGAACAAGAAGCTCTTGTCAATAGACTGTGGAAGCGCATGGACAAATTGGAGGCAGAGAAAAGAATCCTCCAGGAGAAGTTGGACCAGCCTGTGtctgctcctccctctcccagggATGTTTCCATGGAGATCGACTCTCCGGAGAACATGATGCGGCATATCCGCTTCCTGAAGGATGAGGTGGAGAGACTGAAGAAGAGCCTCCGTACCACCGAGCTGCAGCACACAGAGAAGCGGGCCCAGTACATTGAGGAGGAGCGGCACATGCGTGAGGAGAACATCCGTCTGCAGAGGAAgctgcagagagagatggagcgccGCGAGGCCCTGTGTAGACAGCTGTCTGAGAGCGAGTCCAGTCTGGAGATGGATGACGAGAGGTACTTCAATGAGATGTCAGCTCAAGGCTTGCGAGCACGGACGGTATCCAGTCCCATCCCATACACTCCTTCCCCCAGCTCCAGCCGACCCATATCACCTGGTCTGTCATACGGTAGTCACACAGTTGGGTTCACTCCCCCGGCCactctgtccagagccgccatcTCCCACTTCAACGCCCCAGCCCTGCACATCCACGGAGGATCCTCCCACGGCGTAGCGATATCATGGGAGTGTTGTCGTGTACATTGATCCTTGCTGAGATGTAGCAATAGTGAAGAATGGATCTCCTACCAATACCATGGAGAAGGGCTGGTGTAAGTGGGCCATTAATCTTTATGGTGTGTATCTAATGAGTGTCTAATCTGGGTCACATCTTAATTTGTTTGGTACAGTATAAAGCTCCTGTGTCCGTCATCTTACATGACTAGCCTTGATGGTATTCCACGTATGGTAGTTTtacttgtgtgtgttgttgtttccCCCCTCCCATGTTTTCTGAGGAATAAATAAATTGTTGGgcataagactgtaaaaacactgggaaatcagctccaagttatATTCCCACGCATAAGAGAGTCACGTGATCATATAGCAAGGTTTGAAAtaattgttttagtcaaatattataatattatatctgtttgggattatttgtaattatgttctggacCCCCAAACATGCGCTCAAGAAAAAAAAATGGTCCCCTGCTGAATGTAGTTGGTGATCCCTGGACTATATGAATGTTCTATCAAATGAGGTCTTTTCAATAAACGGGCCAGGAGTCAGTCTGAGCCAGCAGATTT

Function

GO: NA

KEGG:

id description
K09288 CCDC6, PTC; coiled-coil domain-containing protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2118104 lncRNA downstream 59227 28149615 ~ 28149901 (-) True G1850494
TU2118099 lncRNA downstream 72027 28136564 ~ 28137101 (-) True G1850489
TU2118082 lncRNA downstream 88686 28115600 ~ 28120442 (-) True LOC110502532
TU2117983 lncRNA downstream 216159 27990184 ~ 27992969 (-) False G1850380
TU2118379 lncRNA upstream 237491 28464588 ~ 28466261 (-) True G1850718
TU2118438 lncRNA upstream 360373 28587470 ~ 28587763 (-) True G1850764
TU2118440 lncRNA upstream 362341 28589438 ~ 28589658 (-) True G1850766
TU2118452 lncRNA upstream 366201 28593298 ~ 28593712 (-) True G1850778
TU2118636 lncRNA upstream 424647 28651744 ~ 28652420 (-) True G1850944
XM_021580615.2 mRNA downstream 11545 28181086 ~ 28197583 (-) True LOC110502533
XM_021580610.2 mRNA downstream 11567 28181086 ~ 28197561 (-) False LOC110502533
XM_021580611.2 mRNA downstream 12146 28181086 ~ 28196982 (-) False LOC110502533
XM_021580613.2 mRNA downstream 12915 28181086 ~ 28196213 (-) False LOC110502533
XM_021580612.2 mRNA downstream 12971 28181086 ~ 28196157 (-) False LOC110502533
XM_036960109.1 mRNA upstream 1441 28228538 ~ 28282898 (-) False LOC110502535
XM_036960110.1 mRNA upstream 1441 28228538 ~ 28282898 (-) False LOC110502535
XM_036960112.1 mRNA upstream 1441 28228538 ~ 28282898 (-) False LOC110502535
XM_036960108.1 mRNA upstream 1441 28228538 ~ 28282899 (-) False LOC110502535
XM_036960111.1 mRNA upstream 1441 28228538 ~ 28282899 (-) False LOC110502535
TU2118048 other downstream 130877 28074925 ~ 28078251 (-) True G1850441
TU2114269 other downstream 2768741 25439807 ~ 25440387 (-) True G1846858
TU2111672 other downstream 4863357 23345091 ~ 23345771 (-) True LOC110502462
TU2111150 other downstream 4975705 23182987 ~ 23233423 (-) True G1843946
TU2118971 other upstream 697642 28924739 ~ 28932545 (-) True LOC110502553
TU2122822 other upstream 2924512 31151609 ~ 31189596 (-) False LOC110502574
TU2122823 other upstream 2924512 31151609 ~ 31169977 (-) True LOC110502574
TU2122867 other upstream 2990500 31217597 ~ 31218171 (-) True G1854905
TU2123334 other upstream 3752900 31979997 ~ 31981333 (-) True G1855326

Expression Profile